NO02G02830.1, NO02G02830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02830.1
Unique NameNO02G02830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1730
Alignment locationchr2:764170..765899 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:764170..765899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02830.1 vs.
Match: EWM30369.1 (tho complex subunit 5 [Nannochloropsis gaditana])

HSP 1 Score: 472.6 bits (1215), Expect = 1.700e-129
Identity = 300/599 (50.08%), Postives = 380/599 (63.44%), Query Frame = 0 
Query:    4 STIRAVHEDFTGLVHQLKAAWLNDDNLALP-KGELQELVTEAAVALIEYKGLARESAVAVECCRAEMQAKKREVDERHLQLQNLLYEKDHLQRTIQTLRDFPLKELAKMEREEGVPLLPGLTEGADGEGRLLSMEEHRQNMETLRAEKETRLRLHQEHADAQTKRAALAEELSKLRDMLGTTLPRQIEELDALCRGIQERMPDIPVAVPFGGFSVDDLRALPQALFILLGRLHAYAQAFDPEESQVSVSIIACASQEQEGTLLPPSLVVVGTEAALLVSKQ------AGSSGMEVDGEEGEDGGVGTAVVTVVDTRAIKLEFSPLEGEEKMGEDV-QKDVLLFYFAMGTRELLVAAPGRHPHALVNLLPGDTGGVSPSSSSSSSSSFIAPTSSFSSSSSSTLLKPTKKRRTSTAKKTSGSSSNSISIAGHPMAFMWLSWLGGTSPFPPHLMDLGAAYTSTCIFNRLRVRLRAQRLLDKVLTNLNLNPREAGKEG-------GIRVGAGGAWTVASFVEVSLAAVLGEEE-EGREAG-------IRDDPFAEVSCGVHGAEGG---GGGRE------GRGGDCECWHDGGGGEWRRRKGR 571
            +T+RAVHED   LVH+LK   L D N  +P K E+QEL+TEAAV LIEYK +ARESA+AV  CR EMQ+KK+EVD+RHLQLQNL+YEKDHLQRTIQ+LRDFP+ EL K+E +EG PLLPGLTEG  G+ RLL +EEHR ++E L+ EK  R++LH+EH  AQTKRAAL+ E+ +LR MLGT+LPRQIEELDALC GI ER+P + +A PFGGF  + ++ALP+ +++LLGRL AY QA DP   +  V +  C  ++     LP  +  +GTEAA L +K+      A S     +GE  E+ G     + +VD  AI++EF PL  +  + E+    DVL+F+FA   RELLV APGRHP ALVNLLPGDT G  PS+         APTS  +  + +   +  +KR   T  K SG+S+ +      P +F+WL WLGGTSPFPP  +DLG AYTS+CI NRLRVRLR+QR LD VL +L   P +  ++        G+     G W V+SF EV+ +A+ GEE  EGRE G          DPFAE  CGV G E G   GG  E       R G        GG  W R   R
Sbjct:   48 TTLRAVHEDLVELVHRLKGT-LGDQNSPVPGKDEMQELITEAAVTLIEYKSMARESAMAVGGCRTEMQSKKKEVDDRHLQLQNLMYEKDHLQRTIQSLRDFPMAELTKIEEDEGAPLLPGLTEG--GQVRLLPVEEHRLSLERLQEEKGARIQLHEEHVAAQTKRAALSREVDELRAMLGTSLPRQIEELDALCTGIHERIPGLSIAAPFGGFPPEQVQALPRPMYVLLGRLQAYRQAQDPAARRTRVEVFPCGDEQAP---LPQCVAALGTEAARLKAKRAQLGPSASSPSTSGEGEGAEEEG---GSLILVDQLAIRVEFPPLGPDGGLQENAGDWDVLIFFFAPEGRELLVTAPGRHPQALVNLLPGDT-GADPSA---------APTSHRAQGTHAGSRRLNRKRAVDT-DKISGASTATFRSPPSPRSFLWLQWLGGTSPFPPEFVDLGLAYTSSCILNRLRVRLRSQRSLDGVLESLRKRPGDVPRDASSPRLFPGVEDAGVGRWLVSSFTEVTRSALSGEEPGEGREEGGGKGEDQGDTDPFAEAPCGVLGGEEGEEAGGPDEVQTRNADREGPATVRSTEGGVAWERAGAR 626
The following BLAST results are available for this feature:
BLAST of NO02G02830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30369.11.700e-12950.08tho complex subunit 5 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02830NO02G02830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02830.1NO02G02830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02830.1.cds1NO02G02830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02830.1 ID=NO02G02830.1|Name=NO02G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1730bp
ATTACAGCGTCCAGATCATGGTGGGCTCAACGATACGCGCTGTCCACGAG
GACTTTACCGGGCTTGTGCATCAACTTAAAGCCGCGTGGCTGAATGACGA
CAACCTTGCCTTACCCAAGGGGGAGTTACAGGAGCTCGTCACGGAGGCAG
CAGTCGCTTTGATAGAATATAAGGGTCTAGCACGGGAGAGCGCAGTAGCG
GTGGAGTGCTGCCGGGCCGAGATGCAAGCCAAGAAGCGGGAGGTGGACGA
GCGACATCTACAGCTTCAAAATCTGCTGTATGAGAAAGATCATCTGCAAC
GGACCATCCAAACTCTGCGCGACTTTCCCTTGAAAGAGCTAGCCAAGATG
GAGCGGGAGGAAGGTGTGCCACTCCTACCTGGCTTGACCGAAGGAGCGGA
TGGGGAAGGCCGACTCCTTTCAATGGAGGAACACCGTCAAAACATGGAGA
CCCTCCGCGCAGAGAAAGAAACGCGTCTGAGACTGCATCAAGAGCATGCC
GATGCCCAAACCAAGCGTGCGGCGCTTGCGGAGGAGTTAAGCAAATTGCG
CGACATGCTCGGCACGACCCTTCCGCGTCAGATCGAAGAGTTAGACGCCC
TCTGTAGAGGTATTCAGGAGCGCATGCCCGACATCCCTGTCGCTGTACCT
TTTGGTGGTTTTTCTGTGGATGATTTGAGAGCATTACCGCAAGCTTTATT
CATTTTGTTGGGGAGGCTGCATGCATATGCACAGGCTTTTGACCCGGAGG
AAAGCCAGGTGTCGGTATCTATAATCGCTTGTGCTTCGCAAGAACAAGAA
GGGACTCTCCTCCCTCCCTCCCTCGTGGTTGTGGGCACGGAAGCAGCGCT
GTTGGTGAGTAAGCAGGCAGGGAGTAGTGGGATGGAGGTGGATGGGGAGG
AAGGAGAGGACGGAGGGGTTGGGACGGCAGTAGTTACAGTCGTGGATACC
CGGGCCATTAAGCTAGAATTTTCACCGTTGGAGGGCGAAGAGAAGATGGG
GGAAGATGTACAGAAGGACGTCCTCCTCTTTTACTTCGCGATGGGCACAA
GAGAATTGCTCGTGGCTGCCCCGGGGCGTCATCCACACGCCCTGGTCAAC
CTCCTTCCCGGGGACACTGGCGGAGTCTCCCCTTCCTCCTCTTCCTCCTC
CTCCTCATCCTTCATCGCCCCTACCTCCTCATTCTCCTCCTCCTCGTCGT
CGACACTCCTCAAACCGACCAAAAAGCGTCGGACTTCGACCGCTAAGAAA
ACCAGTGGCAGCAGCAGCAACAGCATCAGTATCGCAGGGCATCCAATGGC
CTTCATGTGGCTTTCCTGGTTAGGAGGGACATCACCCTTTCCCCCTCATT
TAATGGATTTAGGTGCCGCATACACATCGACGTGCATTTTCAATCGGTTG
AGAGTAAGACTCAGGGCCCAACGGCTGCTGGACAAGGTTTTAACAAATCT
GAATTTGAATCCCCGGGAGGCAGGGAAGGAGGGAGGGATAAGAGTAGGAG
CAGGTGGCGCCTGGACCGTCGCTTCGTTTGTGGAGGTGAGCTTGGCAGCG
GTATTGGGGGAGGAGGAGGAAGGAAGAGAAGCGGGTATCAGGGATGACCC
CTTCGCAGAGGTGTCGTGTGGAGTGCACGGGGCAGAGGGGGGGGGGGGGG
GGAGGGAGGGAAGAGGAGGCGATTGTGAATGTTGGCATGACGGTGGAGGA
GGAGAATGGAGGAGGAGGAAAGGAAGGTAA
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protein sequence of NO02G02830.1

>NO02G02830.1-protein ID=NO02G02830.1-protein|Name=NO02G02830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=571bp
MVGSTIRAVHEDFTGLVHQLKAAWLNDDNLALPKGELQELVTEAAVALIE
YKGLARESAVAVECCRAEMQAKKREVDERHLQLQNLLYEKDHLQRTIQTL
RDFPLKELAKMEREEGVPLLPGLTEGADGEGRLLSMEEHRQNMETLRAEK
ETRLRLHQEHADAQTKRAALAEELSKLRDMLGTTLPRQIEELDALCRGIQ
ERMPDIPVAVPFGGFSVDDLRALPQALFILLGRLHAYAQAFDPEESQVSV
SIIACASQEQEGTLLPPSLVVVGTEAALLVSKQAGSSGMEVDGEEGEDGG
VGTAVVTVVDTRAIKLEFSPLEGEEKMGEDVQKDVLLFYFAMGTRELLVA
APGRHPHALVNLLPGDTGGVSPSSSSSSSSSFIAPTSSFSSSSSSTLLKP
TKKRRTSTAKKTSGSSSNSISIAGHPMAFMWLSWLGGTSPFPPHLMDLGA
AYTSTCIFNRLRVRLRAQRLLDKVLTNLNLNPREAGKEGGIRVGAGGAWT
VASFVEVSLAAVLGEEEEGREAGIRDDPFAEVSCGVHGAEGGGGGREGRG
GDCECWHDGGGGEWRRRKGR*
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mRNA from alignment at chr2:764170..765899-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02830.1 ID=NO02G02830.1|Name=NO02G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1730bp|location=Sequence derived from alignment at chr2:764170..765899- (Nannochloropsis oceanica)
ATTACAGCGTCCAGATCATGGTGGGCTCAACGATACGCGCTGTCCACGAG
GACTTTACCGGGCTTGTGCATCAACTTAAAGCCGCGTGGCTGAATGACGA
CAACCTTGCCTTACCCAAGGGGGAGTTACAGGAGCTCGTCACGGAGGCAG
CAGTCGCTTTGATAGAATATAAGGGTCTAGCACGGGAGAGCGCAGTAGCG
GTGGAGTGCTGCCGGGCCGAGATGCAAGCCAAGAAGCGGGAGGTGGACGA
GCGACATCTACAGCTTCAAAATCTGCTGTATGAGAAAGATCATCTGCAAC
GGACCATCCAAACTCTGCGCGACTTTCCCTTGAAAGAGCTAGCCAAGATG
GAGCGGGAGGAAGGTGTGCCACTCCTACCTGGCTTGACCGAAGGAGCGGA
TGGGGAAGGCCGACTCCTTTCAATGGAGGAACACCGTCAAAACATGGAGA
CCCTCCGCGCAGAGAAAGAAACGCGTCTGAGACTGCATCAAGAGCATGCC
GATGCCCAAACCAAGCGTGCGGCGCTTGCGGAGGAGTTAAGCAAATTGCG
CGACATGCTCGGCACGACCCTTCCGCGTCAGATCGAAGAGTTAGACGCCC
TCTGTAGAGGTATTCAGGAGCGCATGCCCGACATCCCTGTCGCTGTACCT
TTTGGTGGTTTTTCTGTGGATGATTTGAGAGCATTACCGCAAGCTTTATT
CATTTTGTTGGGGAGGCTGCATGCATATGCACAGGCTTTTGACCCGGAGG
AAAGCCAGGTGTCGGTATCTATAATCGCTTGTGCTTCGCAAGAACAAGAA
GGGACTCTCCTCCCTCCCTCCCTCGTGGTTGTGGGCACGGAAGCAGCGCT
GTTGGTGAGTAAGCAGGCAGGGAGTAGTGGGATGGAGGTGGATGGGGAGG
AAGGAGAGGACGGAGGGGTTGGGACGGCAGTAGTTACAGTCGTGGATACC
CGGGCCATTAAGCTAGAATTTTCACCGTTGGAGGGCGAAGAGAAGATGGG
GGAAGATGTACAGAAGGACGTCCTCCTCTTTTACTTCGCGATGGGCACAA
GAGAATTGCTCGTGGCTGCCCCGGGGCGTCATCCACACGCCCTGGTCAAC
CTCCTTCCCGGGGACACTGGCGGAGTCTCCCCTTCCTCCTCTTCCTCCTC
CTCCTCATCCTTCATCGCCCCTACCTCCTCATTCTCCTCCTCCTCGTCGT
CGACACTCCTCAAACCGACCAAAAAGCGTCGGACTTCGACCGCTAAGAAA
ACCAGTGGCAGCAGCAGCAACAGCATCAGTATCGCAGGGCATCCAATGGC
CTTCATGTGGCTTTCCTGGTTAGGAGGGACATCACCCTTTCCCCCTCATT
TAATGGATTTAGGTGCCGCATACACATCGACGTGCATTTTCAATCGGTTG
AGAGTAAGACTCAGGGCCCAACGGCTGCTGGACAAGGTTTTAACAAATCT
GAATTTGAATCCCCGGGAGGCAGGGAAGGAGGGAGGGATAAGAGTAGGAG
CAGGTGGCGCCTGGACCGTCGCTTCGTTTGTGGAGGTGAGCTTGGCAGCG
GTATTGGGGGAGGAGGAGGAAGGAAGAGAAGCGGGTATCAGGGATGACCC
CTTCGCAGAGGTGTCGTGTGGAGTGCACGGGGCAGAGGGGGGGGGGGGGG
GGAGGGAGGGAAGAGGAGGCGATTGTGAATGTTGGCATGACGGTGGAGGA
GGAGAATGGAGGAGGAGGAAAGGAAGGTAA
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Coding sequence (CDS) from alignment at chr2:764170..765899-

>NO02G02830.1 ID=NO02G02830.1|Name=NO02G02830.1|organism=Nannochloropsis oceanica|type=CDS|length=1713bp|location=Sequence derived from alignment at chr2:764170..765899- (Nannochloropsis oceanica)
ATGGTGGGCTCAACGATACGCGCTGTCCACGAGGACTTTACCGGGCTTGT
GCATCAACTTAAAGCCGCGTGGCTGAATGACGACAACCTTGCCTTACCCA
AGGGGGAGTTACAGGAGCTCGTCACGGAGGCAGCAGTCGCTTTGATAGAA
TATAAGGGTCTAGCACGGGAGAGCGCAGTAGCGGTGGAGTGCTGCCGGGC
CGAGATGCAAGCCAAGAAGCGGGAGGTGGACGAGCGACATCTACAGCTTC
AAAATCTGCTGTATGAGAAAGATCATCTGCAACGGACCATCCAAACTCTG
CGCGACTTTCCCTTGAAAGAGCTAGCCAAGATGGAGCGGGAGGAAGGTGT
GCCACTCCTACCTGGCTTGACCGAAGGAGCGGATGGGGAAGGCCGACTCC
TTTCAATGGAGGAACACCGTCAAAACATGGAGACCCTCCGCGCAGAGAAA
GAAACGCGTCTGAGACTGCATCAAGAGCATGCCGATGCCCAAACCAAGCG
TGCGGCGCTTGCGGAGGAGTTAAGCAAATTGCGCGACATGCTCGGCACGA
CCCTTCCGCGTCAGATCGAAGAGTTAGACGCCCTCTGTAGAGGTATTCAG
GAGCGCATGCCCGACATCCCTGTCGCTGTACCTTTTGGTGGTTTTTCTGT
GGATGATTTGAGAGCATTACCGCAAGCTTTATTCATTTTGTTGGGGAGGC
TGCATGCATATGCACAGGCTTTTGACCCGGAGGAAAGCCAGGTGTCGGTA
TCTATAATCGCTTGTGCTTCGCAAGAACAAGAAGGGACTCTCCTCCCTCC
CTCCCTCGTGGTTGTGGGCACGGAAGCAGCGCTGTTGGTGAGTAAGCAGG
CAGGGAGTAGTGGGATGGAGGTGGATGGGGAGGAAGGAGAGGACGGAGGG
GTTGGGACGGCAGTAGTTACAGTCGTGGATACCCGGGCCATTAAGCTAGA
ATTTTCACCGTTGGAGGGCGAAGAGAAGATGGGGGAAGATGTACAGAAGG
ACGTCCTCCTCTTTTACTTCGCGATGGGCACAAGAGAATTGCTCGTGGCT
GCCCCGGGGCGTCATCCACACGCCCTGGTCAACCTCCTTCCCGGGGACAC
TGGCGGAGTCTCCCCTTCCTCCTCTTCCTCCTCCTCCTCATCCTTCATCG
CCCCTACCTCCTCATTCTCCTCCTCCTCGTCGTCGACACTCCTCAAACCG
ACCAAAAAGCGTCGGACTTCGACCGCTAAGAAAACCAGTGGCAGCAGCAG
CAACAGCATCAGTATCGCAGGGCATCCAATGGCCTTCATGTGGCTTTCCT
GGTTAGGAGGGACATCACCCTTTCCCCCTCATTTAATGGATTTAGGTGCC
GCATACACATCGACGTGCATTTTCAATCGGTTGAGAGTAAGACTCAGGGC
CCAACGGCTGCTGGACAAGGTTTTAACAAATCTGAATTTGAATCCCCGGG
AGGCAGGGAAGGAGGGAGGGATAAGAGTAGGAGCAGGTGGCGCCTGGACC
GTCGCTTCGTTTGTGGAGGTGAGCTTGGCAGCGGTATTGGGGGAGGAGGA
GGAAGGAAGAGAAGCGGGTATCAGGGATGACCCCTTCGCAGAGGTGTCGT
GTGGAGTGCACGGGGCAGAGGGGGGGGGGGGGGGGAGGGAGGGAAGAGGA
GGCGATTGTGAATGTTGGCATGACGGTGGAGGAGGAGAATGGAGGAGGAG
GAAAGGAAGGTAA
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Synonyms
Publications