NO02G02800.1, NO02G02800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02800.1
Unique NameNO02G02800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1370
Alignment locationchr2:759607..761586 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:759607..761586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G02800.1 vs.
Match: EWM30361.1 (casein kinase ii subunit beta [Nannochloropsis gaditana])

HSP 1 Score: 377.5 bits (968), Expect = 4.300e-101
Identity = 207/332 (62.35%), Postives = 243/332 (73.19%), Query Frame = 0
Query:    1 MSDDSSHSSDDSGASWITSFCQEQQNQFFCEVERAFIEDGFNLYGLRPYVKHFKESLDIILDKKSHSEDDGEDQGEYQENAELLYGMIHARYIITMHGMETMSRKYDRKDFGQCPRIMCEGQAVVPLGTKDDPYQDLVRIFCPRCQQVYNPPAFIGSRSGSGGGGGGGGRNSCGQRRQRQGSSSPSSSSSSSSS--SSVIGVIRMDAAFIGTTFPHLFFMTFENKIPPPARDVYVPRVFGFKLHETNKSRVFPTLLP----VPVSTPTIPAGPHPPKGADG-TAAAAGGGNRGEGAAGAANKEEAYVMVGSDDTSALAHLVKHHKRKRVDGE 326
            MS+DSSHSSDDS ASWI SFCQE+QNQFFCEVER FIEDGFNLYGLRPYVKHFKESLDIILDK SH+ED+  +Q EYQ+NAELLYG+IH+RYIITMHGMETM  KY RKDFG CPR+MCEGQAV+P+GTKD+PYQ +VR+FCPRCQQ+Y P      ++   G G  GG      RRQRQ  SS SSS+SS+SS   +   +I MD AFIGTTFPHLF MTFE+K+PPPARDVY+PRVFGF+LH TNKSRV PTLLP    +  ST +       P  ADG    A+GGG  G+G   A+N       + ++D+         HKR+R + E
Sbjct:    1 MSEDSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGG------RRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPPARDVYIPRVFGFRLHTTNKSRVTPTLLPALHHITASTSSAAEAHRVPSKADGCDPPASGGGGAGKGVT-ASN-----AAISNEDSGGGVVSPAKHKRRRTEEE 320          
The following BLAST results are available for this feature:
BLAST of NO02G02800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30361.14.300e-10162.35casein kinase ii subunit beta [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02800NO02G02800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02800.1NO02G02800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02800.1.cds1NO02G02800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02800.1.cds2NO02G02800.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02800.1.cds3NO02G02800.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02800.1.cds4NO02G02800.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02800.1.cds5NO02G02800.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02800.1.cds6NO02G02800.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02800.1.cds7NO02G02800.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02800.1 ID=NO02G02800.1|Name=NO02G02800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1370bp
AACAACAGGCGGCGCAAGCCCAAGTGCGGAAGAGAGAGGCCTCGCAACCC
CCTGACTAGATCGTCTACCTCCCCCCCGCCAAAAAAAGACCCTCGACGTA
GCTATCGTCTAACCAACCACAGTTATGTCAGACGACTCATCGCACTCGTC
AGACGATTCTGGGGCGTCCTGGATAACTTCTTTCTGCCAGGAGCAGCAGA
ACCAGTTCTTTTGCGAGGTAGAGCGGGCATTCATAGAGGATGGATTCAAC
CTTTACGGTTTGCGGCCATACGTGAAGCATTTTAAGGAGTCGCTGGACAT
CATATTGGATAAAAAATCTCATTCCGAGGACGATGGCGAAGACCAAGGAG
AATACCAAGAGAACGCCGAACTTCTTTACGGCATGATACACGCCCGCTAT
ATAATTACAATGCACGGTATGGAGACAATGAGTCGGAAATATGACAGGAA
GGACTTTGGGCAGTGCCCGCGGATAATGTGCGAGGGCCAAGCAGTTGTGC
CGCTTGGCACAAAGGATGACCCCTACCAGGACCTGGTCCGGATCTTTTGT
CCCAGGTGCCAGCAGGTGTACAATCCACCGGCCTTCATAGGCAGCAGGAG
CGGTAGCGGAGGAGGAGGAGGAGGAGGAGGGCGCAACAGCTGCGGACAAA
GACGACAGCGACAAGGCTCTTCCTCCCCTTCCTCCTCGTCGAGCAGCTCC
AGCAGCAGCAGCGTAATTGGCGTCATACGTATGGACGCGGCCTTCATCGG
CACCACTTTTCCCCACCTCTTTTTCATGACCTTTGAGAATAAGATCCCTC
CACCTGCTCGAGACGTTTATGTGCCCCGCGTTTTCGGCTTCAAACTTCAC
GAGACCAACAAAAGCAGAGTATTCCCGACCCTCCTCCCTGTGCCCGTCTC
CACACCGACGATCCCTGCCGGCCCACATCCACCAAAAGGCGCCGACGGTA
CCGCAGCAGCAGCAGGTGGAGGGAATAGGGGAGAAGGGGCAGCAGGAGCA
GCCAATAAAGAAGAGGCGTACGTGATGGTCGGAAGCGACGACACAAGCGC
ACTGGCCCATTTAGTCAAGCACCACAAAAGGAAGCGCGTAGACGGTGAAC
GATGACGACGTGTTGGCAACAGCGGCAATCAAACATGAAAAAAAATAGAA
ATGTATCAATGTGTGTCTTAGGCGTTAACAACGATCATACGTGAGAAAAC
GAGCATGACGGCGAAACCCTCCTCTCCTTTGTGGTACCCTGCTGTGGGTG
GTGGATGGGAGCACTTGGCTGTAGTGTGTTGAAAGAGTGTGCCAGTAAAA
CCCCACCACAGCTGAACAATTTATACCATGGACGGAAAAGAAGAAAAAGA
AACAAGCCCGAATCATGCAA
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protein sequence of NO02G02800.1

>NO02G02800.1-protein ID=NO02G02800.1-protein|Name=NO02G02800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MSDDSSHSSDDSGASWITSFCQEQQNQFFCEVERAFIEDGFNLYGLRPYV
KHFKESLDIILDKKSHSEDDGEDQGEYQENAELLYGMIHARYIITMHGME
TMSRKYDRKDFGQCPRIMCEGQAVVPLGTKDDPYQDLVRIFCPRCQQVYN
PPAFIGSRSGSGGGGGGGGRNSCGQRRQRQGSSSPSSSSSSSSSSSVIGV
IRMDAAFIGTTFPHLFFMTFENKIPPPARDVYVPRVFGFKLHETNKSRVF
PTLLPVPVSTPTIPAGPHPPKGADGTAAAAGGGNRGEGAAGAANKEEAYV
MVGSDDTSALAHLVKHHKRKRVDGER*
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mRNA from alignment at chr2:759607..761586+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02800.1 ID=NO02G02800.1|Name=NO02G02800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1980bp|location=Sequence derived from alignment at chr2:759607..761586+ (Nannochloropsis oceanica)
AACAACAGGCGGCGCAAGCCCAAGTGCGGAAGAGAGAGGCCTCGCAACCC CCTGACTAGATCGTCTACCTCCCCCCCGCCAAAAAAAGACCCTCGACGTA GCTATCGTCTAACCAACCACAGTTATGTCAGACGACTCATCGCACTCGTC AGGTATGTTTGAACCCGTGCTTGATGTAGAAATGGACTTTCGAAAGGCTT TCATCCGGCCCTGTTCTTATTGCTAATTCCTCCCCTCTTTTCTCTGCCCT ACCAGACGATTCTGGGGCGTCCTGGATAACTTCTTTCTGCCAGGAGCAGC AGAACCAGTTCTTTTGCGAGGTAGAGCGGGCATTCATAGAGGATGGATGT AAGTGTCTTCGAGAGGAGGATGGGAAGGAGGGAGGGAGCTCGGAGATGGC GCAAATTCGGGCCGATCCACTGACCCTTCCCATGCACCTCCCTCGCAAAC AGTCAACCTTTACGGTTTGCGGCCATACGTGAAGCATTTTAAGGAGTCGC TGGACATCATATTGGATAAAAAATCTCATTGTACGTGAAAAAGAGGATCA GCTTGGGTTTATCATCTGTCGAGAGTCTGACTCACATCACCTACCCACAG CCGAGGACGATGGCGAAGACCAAGGAGAATACCAAGAGAACGCCGAACTT CTTTACGGCATGATACACGCCCGCTATATAATTACAATGCACGGTATGGA GACAATGGTACGTGAAGATCTTGCGCTTACGTTGCTGGAGAGGGAAGTCG GAGAGGGAATGCGGGAAAACACCTGCGTTCAATTCGAGTCACCCAGTTTC CTACTTACATCTCTTCACCTTTTCCACAGAGTCGGAAATATGACAGGAAG GACTTTGGGCAGTGCCCGCGGATAATGTGCGAGGGCCAAGCAGTTGTGCC GGTACGTTGATGAGAATAGAGAGAGACAATTTGGGGAATGCTTACTTCCT ACTCTTCGGTAATCCTATCTCCCACCTTTCCTAACACACACCCACGCCGT CTCTCAATGTACTTTCAGCTTGGCACAAAGGATGACCCCTACCAGGACCT GGTCCGGATCTTTTGTCCCAGGTGCCAGCAGGTGTACAATCCACCGGCCT TCATAGGCAGCAGGAGCGGTAGCGGAGGAGGAGGAGGAGGAGGAGGGCGC AACAGCTGCGGACAAAGACGACAGCGACAAGGCTCTTCCTCCCCTTCCTC CTCGTCGAGCAGCTCCAGCAGCAGCAGCGTAATTGGCGTCATACGTAAGT CTTCCGTGTCCTTTCCACCACAATAACATTGAGAGGCATCCGTTCACTCT CACACCTCTAAATCCATCTCCTCCTCTCCGTCACCCAGGTATGGACGCGG CCTTCATCGGCACCACTTTTCCCCACCTCTTTTTCATGACCTTTGAGAAT AAGATCCCTCCACCTGCTCGAGACGTTTATGTGCCCCGCGTTTTCGGCTT CAAACTTCACGAGACCAACAAAAGCAGAGTATTCCCGACCCTCCTCCCTG TGCCCGTCTCCACACCGACGATCCCTGCCGGCCCACATCCACCAAAAGGC GCCGACGGTACCGCAGCAGCAGCAGGTGGAGGGAATAGGGGAGAAGGGGC AGCAGGAGCAGCCAATAAAGAAGAGGCGTACGTGATGGTCGGAAGCGACG ACACAAGCGCACTGGCCCATTTAGTCAAGCACCACAAAAGGAAGCGCGTA GACGGTGAACGATGACGACGTGTTGGCAACAGCGGCAATCAAACATGAAA AAAAATAGAAATGTATCAATGTGTGTCTTAGGCGTTAACAACGATCATAC GTGAGAAAACGAGCATGACGGCGAAACCCTCCTCTCCTTTGTGGTACCCT GCTGTGGGTGGTGGATGGGAGCACTTGGCTGTAGTGTGTTGAAAGAGTGT GCCAGTAAAACCCCACCACAGCTGAACAATTTATACCATGGACGGAAAAG AAGAAAAAGAAACAAGCCCGAATCATGCAA
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Coding sequence (CDS) from alignment at chr2:759607..761586+

>NO02G02800.1 ID=NO02G02800.1|Name=NO02G02800.1|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at chr2:759607..761586+ (Nannochloropsis oceanica)
ATGTCAGACGACTCATCGCACTCGTCAGACGATTCTGGGGCGTCCTGGAT
AACTTCTTTCTGCCAGGAGCAGCAGAACCAGTTCTTTTGCGAGGTAGAGC
GGGCATTCATAGAGGATGGATTCAACCTTTACGGTTTGCGGCCATACGTG
AAGCATTTTAAGGAGTCGCTGGACATCATATTGGATAAAAAATCTCATTC
CGAGGACGATGGCGAAGACCAAGGAGAATACCAAGAGAACGCCGAACTTC
TTTACGGCATGATACACGCCCGCTATATAATTACAATGCACGGTATGGAG
ACAATGAGTCGGAAATATGACAGGAAGGACTTTGGGCAGTGCCCGCGGAT
AATGTGCGAGGGCCAAGCAGTTGTGCCGCTTGGCACAAAGGATGACCCCT
ACCAGGACCTGGTCCGGATCTTTTGTCCCAGGTGCCAGCAGGTGTACAAT
CCACCGGCCTTCATAGGCAGCAGGAGCGGTAGCGGAGGAGGAGGAGGAGG
AGGAGGGCGCAACAGCTGCGGACAAAGACGACAGCGACAAGGCTCTTCCT
CCCCTTCCTCCTCGTCGAGCAGCTCCAGCAGCAGCAGCGTAATTGGCGTC
ATACGTATGGACGCGGCCTTCATCGGCACCACTTTTCCCCACCTCTTTTT
CATGACCTTTGAGAATAAGATCCCTCCACCTGCTCGAGACGTTTATGTGC
CCCGCGTTTTCGGCTTCAAACTTCACGAGACCAACAAAAGCAGAGTATTC
CCGACCCTCCTCCCTGTGCCCGTCTCCACACCGACGATCCCTGCCGGCCC
ACATCCACCAAAAGGCGCCGACGGTACCGCAGCAGCAGCAGGTGGAGGGA
ATAGGGGAGAAGGGGCAGCAGGAGCAGCCAATAAAGAAGAGGCGTACGTG
ATGGTCGGAAGCGACGACACAAGCGCACTGGCCCATTTAGTCAAGCACCA
CAAAAGGAAGCGCGTAGACGGTGAACGATGA
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Synonyms
Publications