|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:759607..761586 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02800.1 vs.
Match: EWM30361.1 (casein kinase ii subunit beta [Nannochloropsis gaditana]) HSP 1 Score: 377.5 bits (968), Expect = 4.300e-101 Identity = 207/332 (62.35%), Postives = 243/332 (73.19%), Query Frame = 0
Query: 1 MSDDSSHSSDDSGASWITSFCQEQQNQFFCEVERAFIEDGFNLYGLRPYVKHFKESLDIILDKKSHSEDDGEDQGEYQENAELLYGMIHARYIITMHGMETMSRKYDRKDFGQCPRIMCEGQAVVPLGTKDDPYQDLVRIFCPRCQQVYNPPAFIGSRSGSGGGGGGGGRNSCGQRRQRQGSSSPSSSSSSSSS--SSVIGVIRMDAAFIGTTFPHLFFMTFENKIPPPARDVYVPRVFGFKLHETNKSRVFPTLLP----VPVSTPTIPAGPHPPKGADG-TAAAAGGGNRGEGAAGAANKEEAYVMVGSDDTSALAHLVKHHKRKRVDGE 326
MS+DSSHSSDDS ASWI SFCQE+QNQFFCEVER FIEDGFNLYGLRPYVKHFKESLDIILDK SH+ED+ +Q EYQ+NAELLYG+IH+RYIITMHGMETM KY RKDFG CPR+MCEGQAV+P+GTKD+PYQ +VR+FCPRCQQ+Y P ++ G G GG RRQRQ SS SSS+SS+SS + +I MD AFIGTTFPHLF MTFE+K+PPPARDVY+PRVFGF+LH TNKSRV PTLLP + ST + P ADG A+GGG G+G A+N + ++D+ HKR+R + E
Sbjct: 1 MSEDSSHSSDDSVASWIASFCQERQNQFFCEVERTFIEDGFNLYGLRPYVKHFKESLDIILDKNSHAEDEEAEQEEYQQNAELLYGLIHSRYIITMHGMETMCEKYQRKDFGVCPRVMCEGQAVLPVGTKDEPYQAVVRVFCPRCQQLYTPSVITRRQAVLSGAGYSGG------RRQRQVFSSVSSSASSTSSGGENSSTLILMDGAFIGTTFPHLFLMTFEDKVPPPARDVYIPRVFGFRLHTTNKSRVTPTLLPALHHITASTSSAAEAHRVPSKADGCDPPASGGGGAGKGVT-ASN-----AAISNEDSGGGVVSPAKHKRRRTEEE 320
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02800.1 ID=NO02G02800.1|Name=NO02G02800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1370bp AACAACAGGCGGCGCAAGCCCAAGTGCGGAAGAGAGAGGCCTCGCAACCC CCTGACTAGATCGTCTACCTCCCCCCCGCCAAAAAAAGACCCTCGACGTA GCTATCGTCTAACCAACCACAGTTATGTCAGACGACTCATCGCACTCGTC AGACGATTCTGGGGCGTCCTGGATAACTTCTTTCTGCCAGGAGCAGCAGA ACCAGTTCTTTTGCGAGGTAGAGCGGGCATTCATAGAGGATGGATTCAAC CTTTACGGTTTGCGGCCATACGTGAAGCATTTTAAGGAGTCGCTGGACAT CATATTGGATAAAAAATCTCATTCCGAGGACGATGGCGAAGACCAAGGAG AATACCAAGAGAACGCCGAACTTCTTTACGGCATGATACACGCCCGCTAT ATAATTACAATGCACGGTATGGAGACAATGAGTCGGAAATATGACAGGAA GGACTTTGGGCAGTGCCCGCGGATAATGTGCGAGGGCCAAGCAGTTGTGC CGCTTGGCACAAAGGATGACCCCTACCAGGACCTGGTCCGGATCTTTTGT CCCAGGTGCCAGCAGGTGTACAATCCACCGGCCTTCATAGGCAGCAGGAG CGGTAGCGGAGGAGGAGGAGGAGGAGGAGGGCGCAACAGCTGCGGACAAA GACGACAGCGACAAGGCTCTTCCTCCCCTTCCTCCTCGTCGAGCAGCTCC AGCAGCAGCAGCGTAATTGGCGTCATACGTATGGACGCGGCCTTCATCGG CACCACTTTTCCCCACCTCTTTTTCATGACCTTTGAGAATAAGATCCCTC CACCTGCTCGAGACGTTTATGTGCCCCGCGTTTTCGGCTTCAAACTTCAC GAGACCAACAAAAGCAGAGTATTCCCGACCCTCCTCCCTGTGCCCGTCTC CACACCGACGATCCCTGCCGGCCCACATCCACCAAAAGGCGCCGACGGTA CCGCAGCAGCAGCAGGTGGAGGGAATAGGGGAGAAGGGGCAGCAGGAGCA GCCAATAAAGAAGAGGCGTACGTGATGGTCGGAAGCGACGACACAAGCGC ACTGGCCCATTTAGTCAAGCACCACAAAAGGAAGCGCGTAGACGGTGAAC GATGACGACGTGTTGGCAACAGCGGCAATCAAACATGAAAAAAAATAGAA ATGTATCAATGTGTGTCTTAGGCGTTAACAACGATCATACGTGAGAAAAC GAGCATGACGGCGAAACCCTCCTCTCCTTTGTGGTACCCTGCTGTGGGTG GTGGATGGGAGCACTTGGCTGTAGTGTGTTGAAAGAGTGTGCCAGTAAAA CCCCACCACAGCTGAACAATTTATACCATGGACGGAAAAGAAGAAAAAGA AACAAGCCCGAATCATGCAA back to topprotein sequence of NO02G02800.1 >NO02G02800.1-protein ID=NO02G02800.1-protein|Name=NO02G02800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp MSDDSSHSSDDSGASWITSFCQEQQNQFFCEVERAFIEDGFNLYGLRPYV KHFKESLDIILDKKSHSEDDGEDQGEYQENAELLYGMIHARYIITMHGME TMSRKYDRKDFGQCPRIMCEGQAVVPLGTKDDPYQDLVRIFCPRCQQVYN PPAFIGSRSGSGGGGGGGGRNSCGQRRQRQGSSSPSSSSSSSSSSSVIGV IRMDAAFIGTTFPHLFFMTFENKIPPPARDVYVPRVFGFKLHETNKSRVF PTLLPVPVSTPTIPAGPHPPKGADGTAAAAGGGNRGEGAAGAANKEEAYV MVGSDDTSALAHLVKHHKRKRVDGER* back to topmRNA from alignment at chr2:759607..761586+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02800.1 ID=NO02G02800.1|Name=NO02G02800.1|organism=Nannochloropsis oceanica|type=mRNA|length=1980bp|location=Sequence derived from alignment at chr2:759607..761586+ (Nannochloropsis oceanica) AACAACAGGCGGCGCAAGCCCAAGTGCGGAAGAGAGAGGCCTCGCAACCC
CCTGACTAGATCGTCTACCTCCCCCCCGCCAAAAAAAGACCCTCGACGTA
GCTATCGTCTAACCAACCACAGTTATGTCAGACGACTCATCGCACTCGTC
AGGTATGTTTGAACCCGTGCTTGATGTAGAAATGGACTTTCGAAAGGCTT
TCATCCGGCCCTGTTCTTATTGCTAATTCCTCCCCTCTTTTCTCTGCCCT
ACCAGACGATTCTGGGGCGTCCTGGATAACTTCTTTCTGCCAGGAGCAGC
AGAACCAGTTCTTTTGCGAGGTAGAGCGGGCATTCATAGAGGATGGATGT
AAGTGTCTTCGAGAGGAGGATGGGAAGGAGGGAGGGAGCTCGGAGATGGC
GCAAATTCGGGCCGATCCACTGACCCTTCCCATGCACCTCCCTCGCAAAC
AGTCAACCTTTACGGTTTGCGGCCATACGTGAAGCATTTTAAGGAGTCGC
TGGACATCATATTGGATAAAAAATCTCATTGTACGTGAAAAAGAGGATCA
GCTTGGGTTTATCATCTGTCGAGAGTCTGACTCACATCACCTACCCACAG
CCGAGGACGATGGCGAAGACCAAGGAGAATACCAAGAGAACGCCGAACTT
CTTTACGGCATGATACACGCCCGCTATATAATTACAATGCACGGTATGGA
GACAATGGTACGTGAAGATCTTGCGCTTACGTTGCTGGAGAGGGAAGTCG
GAGAGGGAATGCGGGAAAACACCTGCGTTCAATTCGAGTCACCCAGTTTC
CTACTTACATCTCTTCACCTTTTCCACAGAGTCGGAAATATGACAGGAAG
GACTTTGGGCAGTGCCCGCGGATAATGTGCGAGGGCCAAGCAGTTGTGCC
GGTACGTTGATGAGAATAGAGAGAGACAATTTGGGGAATGCTTACTTCCT
ACTCTTCGGTAATCCTATCTCCCACCTTTCCTAACACACACCCACGCCGT
CTCTCAATGTACTTTCAGCTTGGCACAAAGGATGACCCCTACCAGGACCT
GGTCCGGATCTTTTGTCCCAGGTGCCAGCAGGTGTACAATCCACCGGCCT
TCATAGGCAGCAGGAGCGGTAGCGGAGGAGGAGGAGGAGGAGGAGGGCGC
AACAGCTGCGGACAAAGACGACAGCGACAAGGCTCTTCCTCCCCTTCCTC
CTCGTCGAGCAGCTCCAGCAGCAGCAGCGTAATTGGCGTCATACGTAAGT
CTTCCGTGTCCTTTCCACCACAATAACATTGAGAGGCATCCGTTCACTCT
CACACCTCTAAATCCATCTCCTCCTCTCCGTCACCCAGGTATGGACGCGG
CCTTCATCGGCACCACTTTTCCCCACCTCTTTTTCATGACCTTTGAGAAT
AAGATCCCTCCACCTGCTCGAGACGTTTATGTGCCCCGCGTTTTCGGCTT
CAAACTTCACGAGACCAACAAAAGCAGAGTATTCCCGACCCTCCTCCCTG
TGCCCGTCTCCACACCGACGATCCCTGCCGGCCCACATCCACCAAAAGGC
GCCGACGGTACCGCAGCAGCAGCAGGTGGAGGGAATAGGGGAGAAGGGGC
AGCAGGAGCAGCCAATAAAGAAGAGGCGTACGTGATGGTCGGAAGCGACG
ACACAAGCGCACTGGCCCATTTAGTCAAGCACCACAAAAGGAAGCGCGTA
GACGGTGAACGATGACGACGTGTTGGCAACAGCGGCAATCAAACATGAAA
AAAAATAGAAATGTATCAATGTGTGTCTTAGGCGTTAACAACGATCATAC
GTGAGAAAACGAGCATGACGGCGAAACCCTCCTCTCCTTTGTGGTACCCT
GCTGTGGGTGGTGGATGGGAGCACTTGGCTGTAGTGTGTTGAAAGAGTGT
GCCAGTAAAACCCCACCACAGCTGAACAATTTATACCATGGACGGAAAAG
AAGAAAAAGAAACAAGCCCGAATCATGCAA back to topCoding sequence (CDS) from alignment at chr2:759607..761586+ >NO02G02800.1 ID=NO02G02800.1|Name=NO02G02800.1|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at chr2:759607..761586+ (Nannochloropsis oceanica) ATGTCAGACGACTCATCGCACTCGTCAGACGATTCTGGGGCGTCCTGGAT AACTTCTTTCTGCCAGGAGCAGCAGAACCAGTTCTTTTGCGAGGTAGAGC GGGCATTCATAGAGGATGGATTCAACCTTTACGGTTTGCGGCCATACGTG AAGCATTTTAAGGAGTCGCTGGACATCATATTGGATAAAAAATCTCATTC CGAGGACGATGGCGAAGACCAAGGAGAATACCAAGAGAACGCCGAACTTC TTTACGGCATGATACACGCCCGCTATATAATTACAATGCACGGTATGGAG ACAATGAGTCGGAAATATGACAGGAAGGACTTTGGGCAGTGCCCGCGGAT AATGTGCGAGGGCCAAGCAGTTGTGCCGCTTGGCACAAAGGATGACCCCT ACCAGGACCTGGTCCGGATCTTTTGTCCCAGGTGCCAGCAGGTGTACAAT CCACCGGCCTTCATAGGCAGCAGGAGCGGTAGCGGAGGAGGAGGAGGAGG AGGAGGGCGCAACAGCTGCGGACAAAGACGACAGCGACAAGGCTCTTCCT CCCCTTCCTCCTCGTCGAGCAGCTCCAGCAGCAGCAGCGTAATTGGCGTC ATACGTATGGACGCGGCCTTCATCGGCACCACTTTTCCCCACCTCTTTTT CATGACCTTTGAGAATAAGATCCCTCCACCTGCTCGAGACGTTTATGTGC CCCGCGTTTTCGGCTTCAAACTTCACGAGACCAACAAAAGCAGAGTATTC CCGACCCTCCTCCCTGTGCCCGTCTCCACACCGACGATCCCTGCCGGCCC ACATCCACCAAAAGGCGCCGACGGTACCGCAGCAGCAGCAGGTGGAGGGA ATAGGGGAGAAGGGGCAGCAGGAGCAGCCAATAAAGAAGAGGCGTACGTG ATGGTCGGAAGCGACGACACAAGCGCACTGGCCCATTTAGTCAAGCACCA CAAAAGGAAGCGCGTAGACGGTGAACGATGA back to top
|