NO02G02740.1, NO02G02740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02740.1
Unique NameNO02G02740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length750
Alignment locationchr2:749810..750920 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:749810..750920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02740.1 vs.
Match: EWM30380.1 (sentrin-specific protease 8 [Nannochloropsis gaditana])

HSP 1 Score: 299.3 bits (765), Expect = 1.100e-77
Identity = 149/262 (56.87%), Postives = 184/262 (70.23%), Query Frame = 0 
Query:    1 MNSEKLLFNYHDDAQVTEGDQILFRPPGWLNDRCINFYFRVLEHEEFQDRPDLLFMDPAVVSCMLIQCTDQGELEEVGEGLKLDRRSMVFIPVNDAEDFRSDCTHWSLLVYSAGNGSSAQPGKFFHLDSSGGRNEPAAKRTAAQFWRMVAGKEG-----GKEGGKVEAVRGCPQQVNGYDCGMYVLIMTKYLAHLYVTEGG---------SEEGRE------------RSPKLNTTRLAARVTPDAIDEARRRIGLKIEQLA 237
            M++E++LF Y D+AQ+T GD  LF+ P WLNDRCINFYFRVLEHEEF  RPDLLF+DP VVSCMLIQCTD+ +L+E+  GL+LD RS+VFIP+NDAE+F S CTHWSLLV+  G     + G FFH DSS GRNE AA +TAAQFWRM    EG     G++  +V+A+  CPQQ NGYDCGMY+L MTKY+AHL+VT+G          ++EG              +  +L+TT L A V+ DA+ E RRRI  KIEQLA
Sbjct:    1 MSAEEVLFYYQDEAQMTRGDLHLFKAPAWLNDRCINFYFRVLEHEEFAGRPDLLFLDPVVVSCMLIQCTDEEDLKELAGGLRLDTRSIVFIPINDAEEFFSGCTHWSLLVFCTGGKGEGKSGSFFHFDSSCGRNESAAMKTAAQFWRMFTILEGRDVIAGRQCPRVDAINDCPQQENGYDCGMYLLGMTKYVAHLFVTQGSGVATRRGSVAKEGENDEGSGTCSVAGGKGSRLDTTGLGAHVSSDAMGELRRRIAQKIEQLA 262
The following BLAST results are available for this feature:
BLAST of NO02G02740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30380.11.100e-7756.87sentrin-specific protease 8 [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02740NO02G02740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02740.1NO02G02740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02740.1.cds1NO02G02740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02740.1.cds2NO02G02740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02740.1.cds3NO02G02740.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02740.1 ID=NO02G02740.1|Name=NO02G02740.1|organism=Nannochloropsis oceanica|type=mRNA|length=750bp
ATGAACTCAGAAAAGCTTCTGTTCAACTACCACGACGACGCCCAAGTCAC
GGAGGGAGACCAAATACTTTTCAGACCCCCCGGATGGCTGAATGACCGAT
GCATCAATTTCTACTTCCGGGTATTGGAGCACGAGGAGTTTCAGGATCGA
CCAGATTTATTGTTTATGGACCCGGCGGTTGTATCGTGCATGTTGATACA
GTGCACTGACCAAGGCGAGTTGGAGGAAGTGGGGGAGGGCTTGAAGCTGG
ATAGACGAAGCATGGTCTTCATCCCCGTCAACGACGCCGAGGATTTCAGG
AGTGATTGCACGCACTGGAGCCTTCTCGTCTACAGCGCTGGCAACGGCAG
CAGCGCTCAGCCCGGGAAATTCTTCCACCTCGACTCGAGCGGTGGTAGGA
ATGAACCAGCCGCCAAAAGGACAGCTGCTCAGTTTTGGCGCATGGTGGCA
GGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGTGGAAGCTGTGCGGGGATG
TCCACAGCAGGTGAACGGGTATGACTGCGGGATGTATGTCTTGATCATGA
CGAAGTATTTGGCGCATCTTTATGTGACGGAGGGTGGGAGTGAAGAAGGG
AGGGAACGGTCTCCGAAGCTTAATACGACGAGATTGGCGGCGCGTGTGAC
CCCGGATGCGATTGATGAAGCGAGGAGGAGGATCGGGCTGAAGATCGAAC
AGCTTGCTGCTGCTGCTGATGGTGGTGTTGATGGTGACTCTAGGGATTAG
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protein sequence of NO02G02740.1

>NO02G02740.1-protein ID=NO02G02740.1-protein|Name=NO02G02740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MNSEKLLFNYHDDAQVTEGDQILFRPPGWLNDRCINFYFRVLEHEEFQDR
PDLLFMDPAVVSCMLIQCTDQGELEEVGEGLKLDRRSMVFIPVNDAEDFR
SDCTHWSLLVYSAGNGSSAQPGKFFHLDSSGGRNEPAAKRTAAQFWRMVA
GKEGGKEGGKVEAVRGCPQQVNGYDCGMYVLIMTKYLAHLYVTEGGSEEG
RERSPKLNTTRLAARVTPDAIDEARRRIGLKIEQLAAAADGGVDGDSRD*
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mRNA from alignment at chr2:749810..750920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02740.1 ID=NO02G02740.1|Name=NO02G02740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1111bp|location=Sequence derived from alignment at chr2:749810..750920- (Nannochloropsis oceanica)
ATGAACTCAGAAAAGCTTCTGTTCAACTACCACGACGACGCCCAAGTCAC
GGAGGGAGACCAAATACTTTTCAGACCCCCCGGATGGCTGAATGACCGAT
GCATCAATTTCTACTTCCGGGTATTGGAGCACGAGGAGTTTCAGGATCGA
CCAGATTTATTGTTTATGGACCCGGCGGTTGTATCGTGCATGTTGATACA
GTGCACTGGTAGGTGCTGGGATGGAATAAGGGGGGGGGGGAGGGGCCGAA
TAGAATGAAGAAGGGAGGGAGGACGGGCGGTGCAGGGACAGATCTGCAAA
AATTTGAAGAGCAAAAAGTGACGGCTCTTGGTAGGAGCTCTCATATGAAT
TTGTAACCTCCGTGACATCCATTGTTTTATGGAAACTTATTTGGGAATCC
ATTACTTAAAATTGTATCGTAGACCAAGGCGAGTTGGAGGAAGTGGGGGA
GGGCTTGAAGCTGGATAGACGAAGCATGGTCTTCATCCCCGTCAACGACG
CCGAGGATTTCAGGAGTGATTGCACGCACTGGTATGTATGTTAGCATGTC
ACCGTTCTCCTCGGAGGTCTGCATGCGTGTGACAACTTTGCTTCTTTTCC
TACCCCGTCCGTTTCTCACAGGGTCTCTTTCATTCCTCCACGACACTCAC
AGAACCTATTACACACATCCACTATCAGGAGCCTTCTCGTCTACAGCGCT
GGCAACGGCAGCAGCGCTCAGCCCGGGAAATTCTTCCACCTCGACTCGAG
CGGTGGTAGGAATGAACCAGCCGCCAAAAGGACAGCTGCTCAGTTTTGGC
GCATGGTGGCAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGTGGAAGCT
GTGCGGGGATGTCCACAGCAGGTGAACGGGTATGACTGCGGGATGTATGT
CTTGATCATGACGAAGTATTTGGCGCATCTTTATGTGACGGAGGGTGGGA
GTGAAGAAGGGAGGGAACGGTCTCCGAAGCTTAATACGACGAGATTGGCG
GCGCGTGTGACCCCGGATGCGATTGATGAAGCGAGGAGGAGGATCGGGCT
GAAGATCGAACAGCTTGCTGCTGCTGCTGATGGTGGTGTTGATGGTGACT
CTAGGGATTAG
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Coding sequence (CDS) from alignment at chr2:749810..750920-

>NO02G02740.1 ID=NO02G02740.1|Name=NO02G02740.1|organism=Nannochloropsis oceanica|type=CDS|length=750bp|location=Sequence derived from alignment at chr2:749810..750920- (Nannochloropsis oceanica)
ATGAACTCAGAAAAGCTTCTGTTCAACTACCACGACGACGCCCAAGTCAC
GGAGGGAGACCAAATACTTTTCAGACCCCCCGGATGGCTGAATGACCGAT
GCATCAATTTCTACTTCCGGGTATTGGAGCACGAGGAGTTTCAGGATCGA
CCAGATTTATTGTTTATGGACCCGGCGGTTGTATCGTGCATGTTGATACA
GTGCACTGACCAAGGCGAGTTGGAGGAAGTGGGGGAGGGCTTGAAGCTGG
ATAGACGAAGCATGGTCTTCATCCCCGTCAACGACGCCGAGGATTTCAGG
AGTGATTGCACGCACTGGAGCCTTCTCGTCTACAGCGCTGGCAACGGCAG
CAGCGCTCAGCCCGGGAAATTCTTCCACCTCGACTCGAGCGGTGGTAGGA
ATGAACCAGCCGCCAAAAGGACAGCTGCTCAGTTTTGGCGCATGGTGGCA
GGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGTGGAAGCTGTGCGGGGATG
TCCACAGCAGGTGAACGGGTATGACTGCGGGATGTATGTCTTGATCATGA
CGAAGTATTTGGCGCATCTTTATGTGACGGAGGGTGGGAGTGAAGAAGGG
AGGGAACGGTCTCCGAAGCTTAATACGACGAGATTGGCGGCGCGTGTGAC
CCCGGATGCGATTGATGAAGCGAGGAGGAGGATCGGGCTGAAGATCGAAC
AGCTTGCTGCTGCTGCTGATGGTGGTGTTGATGGTGACTCTAGGGATTAG
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Synonyms
Publications