NO02G02640.1, NO02G02640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02640.1
Unique NameNO02G02640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1285
Alignment locationchr2:731825..733438 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:731825..733438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02640.1 vs.
Match: EWM30376.1 (iron-sulfur cluster scaffold protein nfu-like protein [Nannochloropsis gaditana])

HSP 1 Score: 404.4 bits (1038), Expect = 3.000e-109
Identity = 222/297 (74.75%), Postives = 245/297 (82.49%), Query Frame = 0 
Query:   11 MRRALAQIARP--ALAAAAGAAKAARSSNSIRSTLVLLSHRRASTLRTTSISSSTN----GSMTLLALQHLQSFAQRRTMFIQTESTPNPESLKYVPGEVVLDEKYGTGMYFRQGDTEVNRSPLAKKLLKIGGVQGVFLGRTFITITKSPEIIWQNLNPEIFATVMDHYAEGGVIVSDHAIISDTTILDTDDDVVAMIKELMESRIRPAVQEDGGDIFYEGFDIETGVVSVRLAGSCSGCPSSSVTLKNGVENMLMHYIPEVKGIQQVEDDELKEVNEKEVETLEQRLAKAGIPSAE 302
            MRR     A+P  A+   + A    RS NS+R  L   + R+AS LR +S   + N     S +  +   +    Q R+MFIQTESTPNPESLKYVPGE+VLDEKYGTGMYFRQGD EVNRSPLAKKLLKI GV GVFLGRTFITITKSP IIWQNLNPEIFATVMDHYAEGGVIVSDHAI+SDTTILDTDD+VVAM+KELMESRIRPAVQEDGGDIFYEGFD E+G+VSVRLAGSCSGCPSS+VTLKNGVENMLMHYIPEVKGI+QVEDDEL  VNE+E +TLE+RLAKAGIPSAE
Sbjct:    1 MRRIWPAFAKPLNAVTWESAAFACPRSLNSLR-VLHRTTRRQASNLRKSSSHLAANYMWPSSASRTSGLAVPGHIQWRSMFIQTESTPNPESLKYVPGELVLDEKYGTGMYFRQGDMEVNRSPLAKKLLKIEGVMGVFLGRTFITITKSPGIIWQNLNPEIFATVMDHYAEGGVIVSDHAIVSDTTILDTDDEVVAMVKELMESRIRPAVQEDGGDIFYEGFDPESGLVSVRLAGSCSGCPSSAVTLKNGVENMLMHYIPEVKGIRQVEDDELNAVNEREAQTLEERLAKAGIPSAE 296
The following BLAST results are available for this feature:
BLAST of NO02G02640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30376.13.000e-10974.75iron-sulfur cluster scaffold protein nfu-like prot... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02640NO02G02640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02640.1NO02G02640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02640.1.cds1NO02G02640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02640.1.cds2NO02G02640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02640.1.cds3NO02G02640.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02640.1 ID=NO02G02640.1|Name=NO02G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1285bp
ATGCCCCACACCACGACAACAGGCTCGATTATGCGACGCGCCTTGGCACA
AATTGCCCGCCCCGCTCTTGCAGCTGCGGCGGGCGCTGCTAAGGCCGCAC
GCAGCAGCAACAGCATCAGGAGCACTCTCGTCCTCCTGAGCCACCGCAGG
GCATCCACGCTCCGTACCACCTCCATCAGCAGCAGCACCAATGGGAGCAT
GACTTTGCTGGCTCTGCAGCATTTGCAGTCATTCGCGCAGCGGCGGACCA
TGTTCATTCAGACAGAAAGCACACCTAATCCTGAGTCCCTCAAGTACGTC
CCGGGCGAGGTGGTCCTCGACGAGAAGTACGGCACTGGCATGTACTTTCG
ACAAGGCGACACGGAAGTGAATCGCTCACCACTGGCAAAAAAACTTTTGA
AGATTGGAGGTGTTCAAGGCGTCTTTTTGGGGCGAACATTTATCACTATT
ACTAAGTCGCCGGAGATCATTTGGCAGAATCTGAACCCGGAAATCTTCGC
CACCGTGATGGATCATTATGCTGAGGGTGGGGTGATTGTGAGCGACCATG
CCATCATCAGCGACACAACCATCCTGGACACGGATGATGATGTGGTGGCA
ATGATAAAGGAGTTAATGGAAAGCCGCATCCGCCCAGCAGTCCAAGAAGA
TGGGGGGGACATTTTTTATGAGGGATTTGACATTGAGACGGGCGTGGTGA
GCGTGCGGTTGGCAGGCTCCTGTTCAGGCTGTCCCTCCTCGTCAGTGACG
TTGAAGAACGGCGTGGAAAATATGTTGATGCACTATATTCCGGAGGTGAA
AGGTATCCAGCAAGTGGAAGACGACGAGCTCAAGGAGGTGAATGAGAAGG
AGGTCGAGACGTTGGAGCAACGCCTAGCCAAGGCGGGAATTCCGAGTGCG
GAGTAGGAAGGGAAGGAGGGAGGGAAGCAGGGAGGGAGGGAGGGAGGGAG
GGAAGTAGTGTACACTTCTAGTCTCGTCGTCCTCTATAGGCTGGACGCCC
TGATCCTTTGTGCAGAGATGGGGGGAGGGAGTGGCGGAGGGAGGAGGAAT
GGAGTGGCGGAGGGACGGAGGATGTATGATTTGTTGGATTCCGAGAAAAA
CACTTGATCGAGGGTAGAGGGGAGGGAAATGTCATAGAAGGCGATGATGA
CGACGGAAAACGACGACGACGACGACAAAGAAGGGGGGTGCAGGAGGAGA
AAGAAGAGGAGGACCAGGAGAATAAATTGACGAAATGCATGCCACGTCAC
GTGAGCCGTGGTTGAAAGAATCTTGAGGTCGTTTC
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protein sequence of NO02G02640.1

>NO02G02640.1-protein ID=NO02G02640.1-protein|Name=NO02G02640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MPHTTTTGSIMRRALAQIARPALAAAAGAAKAARSSNSIRSTLVLLSHRR
ASTLRTTSISSSTNGSMTLLALQHLQSFAQRRTMFIQTESTPNPESLKYV
PGEVVLDEKYGTGMYFRQGDTEVNRSPLAKKLLKIGGVQGVFLGRTFITI
TKSPEIIWQNLNPEIFATVMDHYAEGGVIVSDHAIISDTTILDTDDDVVA
MIKELMESRIRPAVQEDGGDIFYEGFDIETGVVSVRLAGSCSGCPSSSVT
LKNGVENMLMHYIPEVKGIQQVEDDELKEVNEKEVETLEQRLAKAGIPSA
E*
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mRNA from alignment at chr2:731825..733438+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02640.1 ID=NO02G02640.1|Name=NO02G02640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1614bp|location=Sequence derived from alignment at chr2:731825..733438+ (Nannochloropsis oceanica)
ATGCCCCACACCACGACAACAGGCTCGATTATGCGACGCGCCTTGGCACA
AATTGCCCGCCCCGCTCTTGCAGCTGCGGCGGGCGCTGCTAAGGCCGCAC
GCAGCAGCAACAGCATCAGGAGCACTCTCGTCCTCCTGAGCCACCGCAGG
GCATCCACGCTCCGTACCACCTCCATCAGCAGCAGCACCAATGGGAGCAT
GACTTTGCTGGCTCTGCAGCATTTGCAGTCATTCGCGCAGCGGCGGACCA
TGTTCATTCAGACAGAAAGCACACCTAATCCTGAGTCCCTCAAGTACGTC
CCGGGCGAGGTGGTCCTCGACGAGAAGTACGGCACTGGCATGTACTTTCG
ACAAGGCGACACGGAAGTGAATCGCTCACCACTGGCAAAAAAACTTTTGA
AGATTGGAGGTGTTCAAGGCGTCTTTTTGGGGCGAACATTTATCACTATT
ACTAAGTCGCCGGAGATCATTTGGCAGGTGAGGCAAGAGGGGAAGGCGGG
GGGGAAAGGAGGGCAAGGACGAAAAGAGTGGAACATTTCTTCAGTCTTCC
AGGCACGGTATCACTACTGCAATATCAACATATCTGATCACAACTACTCG
CACCATTCCCTCTCCCTTCCTCTCTCTTTAGAATCTGAACCCGGAAATCT
TCGCCACCGTGATGGATCATTATGCTGAGGGTGGGGTGATTGTGAGCGAC
CATGCCATCATCAGCGACACAACCATCCTGGACACGGATGATGATGTGGT
GGCAATGATAAAGGAGTTAATGGAAAGCCGCATCCGCCCAGCAGTCCAAG
AAGATGGGGGGGACATTTTTTATGAGGGATTTGACATTGAGACGGGCGTG
GTGAGCGTGCGGTTGGCAGGCTCCTGTTCAGGCTGTCCCTCCTCGTCAGT
GACGTTGAAGAACGGCGTGGAAAATATGTTGATGCACTATATTCCGGAGG
TAGGGAGGGAGGGAGGGGGGGAGCTAGTTACTGCCTCCCGTTTCCTACCT
TTCTCACGCTTCCCTTGCTGGCAGCCTTCTTGTCTGATACCGAGGAATTC
ATCTTTTCACGGCCTCTCTCTCTCTCTCCCTCTCCCTCTCCCTCCTCCTC
CCTCCCTCCCATGTCTGGACACAGGTGAAAGGTATCCAGCAAGTGGAAGA
CGACGAGCTCAAGGAGGTGAATGAGAAGGAGGTCGAGACGTTGGAGCAAC
GCCTAGCCAAGGCGGGAATTCCGAGTGCGGAGTAGGAAGGGAAGGAGGGA
GGGAAGCAGGGAGGGAGGGAGGGAGGGAGGGAAGTAGTGTACACTTCTAG
TCTCGTCGTCCTCTATAGGCTGGACGCCCTGATCCTTTGTGCAGAGATGG
GGGGAGGGAGTGGCGGAGGGAGGAGGAATGGAGTGGCGGAGGGACGGAGG
ATGTATGATTTGTTGGATTCCGAGAAAAACACTTGATCGAGGGTAGAGGG
GAGGGAAATGTCATAGAAGGCGATGATGACGACGGAAAACGACGACGACG
ACGACAAAGAAGGGGGGTGCAGGAGGAGAAAGAAGAGGAGGACCAGGAGA
ATAAATTGACGAAATGCATGCCACGTCACGTGAGCCGTGGTTGAAAGAAT
CTTGAGGTCGTTTC
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Coding sequence (CDS) from alignment at chr2:731825..733438+

>NO02G02640.1 ID=NO02G02640.1|Name=NO02G02640.1|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at chr2:731825..733438+ (Nannochloropsis oceanica)
ATGCCCCACACCACGACAACAGGCTCGATTATGCGACGCGCCTTGGCACA
AATTGCCCGCCCCGCTCTTGCAGCTGCGGCGGGCGCTGCTAAGGCCGCAC
GCAGCAGCAACAGCATCAGGAGCACTCTCGTCCTCCTGAGCCACCGCAGG
GCATCCACGCTCCGTACCACCTCCATCAGCAGCAGCACCAATGGGAGCAT
GACTTTGCTGGCTCTGCAGCATTTGCAGTCATTCGCGCAGCGGCGGACCA
TGTTCATTCAGACAGAAAGCACACCTAATCCTGAGTCCCTCAAGTACGTC
CCGGGCGAGGTGGTCCTCGACGAGAAGTACGGCACTGGCATGTACTTTCG
ACAAGGCGACACGGAAGTGAATCGCTCACCACTGGCAAAAAAACTTTTGA
AGATTGGAGGTGTTCAAGGCGTCTTTTTGGGGCGAACATTTATCACTATT
ACTAAGTCGCCGGAGATCATTTGGCAGAATCTGAACCCGGAAATCTTCGC
CACCGTGATGGATCATTATGCTGAGGGTGGGGTGATTGTGAGCGACCATG
CCATCATCAGCGACACAACCATCCTGGACACGGATGATGATGTGGTGGCA
ATGATAAAGGAGTTAATGGAAAGCCGCATCCGCCCAGCAGTCCAAGAAGA
TGGGGGGGACATTTTTTATGAGGGATTTGACATTGAGACGGGCGTGGTGA
GCGTGCGGTTGGCAGGCTCCTGTTCAGGCTGTCCCTCCTCGTCAGTGACG
TTGAAGAACGGCGTGGAAAATATGTTGATGCACTATATTCCGGAGGTGAA
AGGTATCCAGCAAGTGGAAGACGACGAGCTCAAGGAGGTGAATGAGAAGG
AGGTCGAGACGTTGGAGCAACGCCTAGCCAAGGCGGGAATTCCGAGTGCG
GAGTAG
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Synonyms
Publications