NO02G02600.1, NO02G02600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02600.1
Unique NameNO02G02600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1126
Alignment locationchr2:722906..724839 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:722906..724839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02600.1 vs.
Match: EWM30416.1 (hypothetical protein Naga_100026g43 [Nannochloropsis gaditana])

HSP 1 Score: 419.5 bits (1077), Expect = 8.600e-114
Identity = 215/286 (75.17%), Postives = 259/286 (90.56%), Query Frame = 0 
Query:    1 MDAELETLLAVLNDIQKAVGGKVVKKAKEGGKVDKFMDVKQTMIARIVEVRKLIATTRNQTPGQELQPKEVIASNAQVREYLRQLNEDYKELERLFSKEKNKRKSKFAPEELEVRGQVVNQMLREVQELKEVSLAGYIRKGNVTGNNMAGLIVPMEESEAFQGPMGAMPMNTGMTEDHRVQLQQIQQRDKDMDRHYLDQIERGVEDLRDIALRANEGVRTTNVMLENLEQKIIDVQDHLDRVNKKMKTTLQQVGRRSDKLCIDIICIVILLGMIGLLYNLMKNSKN 287
            +DAELETLL VL+DIQ+AVGGKV K  KEGGKVDKFMD+KQTMIAR+++V++LIA+T++QT GQE+QPK+VIA+NAQ+RE++RQL ED KEL+RLF KE+NKRKSKF+PEELE+RG++V+QM+ E+QELKE+SLAGYIRK N T   + GL  P+EES+AF+GP+G +PM T MTE H++QLQQIQQRDKD+D  YLDQIE+GVEDLRDIALRANEG++TTNVMLENLEQKII VQDHLDRVNKKMK TL QVGRRSDKLCID++CIVILLGMIG++YNL KNSKN
Sbjct:   52 VDAELETLLGVLDDIQRAVGGKVKKITKEGGKVDKFMDLKQTMIARMIDVQELIASTKSQTSGQEMQPKDVIATNAQIREHIRQLKEDSKELDRLFQKERNKRKSKFSPEELEMRGKMVSQMMSEIQELKELSLAGYIRKKNNTPGAV-GLFAPVEESDAFRGPIGMLPMQTDMTESHQMQLQQIQQRDKDLDTQYLDQIEKGVEDLRDIALRANEGIKTTNVMLENLEQKIIGVQDHLDRVNKKMKNTLDQVGRRSDKLCIDVVCIVILLGMIGVMYNLGKNSKN 336
The following BLAST results are available for this feature:
BLAST of NO02G02600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30416.18.600e-11475.17hypothetical protein Naga_100026g43 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02600NO02G02600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02600.1NO02G02600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02600.1.cds1NO02G02600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02600.1.cds2NO02G02600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02600.1.cds3NO02G02600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02600.1.cds4NO02G02600.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02600.1.cds5NO02G02600.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02600.1.cds6NO02G02600.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02600.1 ID=NO02G02600.1|Name=NO02G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1126bp
ACAGGCTCCACTGATACCACCACTCTCACGCGGTCTCGGCACCCACATCA
TCGATCAACCATATCTAATATGGATGCAGAGCTCGAGACTTTGCTTGCAG
TCCTCAACGACATTCAGAAAGCAGTGGGAGGCAAGGTCGTGAAGAAGGCC
AAAGAGGGCGGCAAGGTGGATAAGTTCATGGACGTCAAGCAGACCATGAT
CGCACGCATTGTGGAGGTACGAAAGCTCATAGCCACGACCAGGAATCAGA
CGCCGGGTCAAGAACTGCAACCCAAGGAAGTCATCGCCTCCAATGCCCAA
GTCCGAGAGTACCTGCGGCAGTTGAACGAGGACTACAAGGAATTGGAACG
ATTGTTTTCGAAGGAAAAGAACAAGCGGAAGAGCAAATTTGCACCGGAAG
AGCTGGAGGTGCGGGGGCAGGTGGTAAATCAGATGCTGAGGGAGGTACAA
GAATTGAAGGAGGTCTCTCTGGCCGGCTATATTCGGAAAGGCAATGTCAC
TGGGAATAACATGGCAGGCCTGATCGTGCCGATGGAGGAGTCGGAGGCGT
TCCAAGGGCCGATGGGCGCGATGCCCATGAACACAGGCATGACCGAAGAC
CACCGTGTGCAGTTGCAACAGATCCAACAGCGTGATAAGGATATGGACAG
ACATTACCTCGATCAGATCGAGAGGGGCGTGGAGGACTTGAGAGATATAG
CGCTGAGGGCGAATGAGGGGGTTCGAACGACCAACGTGATGCTCGAAAAC
CTCGAGCAAAAAATCATCGATGTCCAGGATCACCTCGATCGCGTGAACAA
AAAGATGAAGACGACCCTGCAGCAGGTTGGGCGACGGTCAGATAAGCTGT
GCATCGACATCATTTGTATTGTAATTCTGCTGGGGATGATTGGCTTGTTG
TATAACCTGATGAAGAACAGTAAGAATTCTTGAGAATGAGCTGCAGCGGT
AGGAGCAGCAGATGTGGGATTTTGGAGTGGGGAGGGGGTGTGGGTTTGGT
TATCATGCAAAGAGGGAGGGGAGGAGGACGATAGTACAGAAGATGGGGCG
TGCGAGAAAAAATCAAGCAAACGACTTCACGACAGTGCAATCTGATCAGA
CGATTTCGATCCATCAATAAAACGTG
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protein sequence of NO02G02600.1

>NO02G02600.1-protein ID=NO02G02600.1-protein|Name=NO02G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MDAELETLLAVLNDIQKAVGGKVVKKAKEGGKVDKFMDVKQTMIARIVEV
RKLIATTRNQTPGQELQPKEVIASNAQVREYLRQLNEDYKELERLFSKEK
NKRKSKFAPEELEVRGQVVNQMLREVQELKEVSLAGYIRKGNVTGNNMAG
LIVPMEESEAFQGPMGAMPMNTGMTEDHRVQLQQIQQRDKDMDRHYLDQI
ERGVEDLRDIALRANEGVRTTNVMLENLEQKIIDVQDHLDRVNKKMKTTL
QQVGRRSDKLCIDIICIVILLGMIGLLYNLMKNSKNS*
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mRNA from alignment at chr2:722906..724839-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02600.1 ID=NO02G02600.1|Name=NO02G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1934bp|location=Sequence derived from alignment at chr2:722906..724839- (Nannochloropsis oceanica)
ACAGGCTCCACTGATACCACCACTCTCACGCGGTCTCGGCACCCACATCA
TCGATCAACCATATCTAATATGGATGCAGAGCTCGAGACTTTGCTTGCAG
TCCTCAACGACATTCAGGTACGATGTCCCGTAGTTTGGCAAAAAGCACAG
GGCTCTAAAAGTGCTCCTACATCCTTCGTTTGCTCTTGCCCCTTGTACGC
CTGCTCACATCAAACCACATTCCCACCAATTACAGAAAGCAGTGGGAGGC
AAGGTCGTGAAGAAGGCCAAAGAGGGCGGCAAGGTGGATAAGTTCATGGA
CGTCAAGCAGACCATGATCGGTGCGTTTGACTGGAAAAGCCGGGAGGAAG
AGAGCGAGAAGGAAGAGAAGGGGGGGGAATGAAATTGTTTTATAAAAGGG
AAGGAGGCGGGGGGGGGGTTACGTATGGATAGGATGGTAGCACATGCGGA
ACTTTTTGTTTGCTGCTTACACAAAGTGCGCGGGCTCTCCCTAAAAAATA
AAGTCAGATGGGCAGTGCTAAAGCACTGCTTCCTCTCTCAAAATTATGCC
ATCAAATGTAATACCCGCTCATTCCTCCAGCAACTCCCCATAACCCTTAT
CACAGCACGCATTGTGGAGGTACGAAAGCTCATAGCCACGACCAGGAATC
AGACGCCGGGTCAAGAACTGCAACCCAAGGAAGTCATCGCCTCCAATGCC
CAAGTCCGAGAGTACCTGCGGCAGTTGAACGAGGACTACAAGGAATTGGA
ACGATTGTTTTCGAAGGAAAAGAACAAGCGGAAGGTAAGGGGAAGCAAAG
GGAGGAGGAGAGATGACTGTGGTGGTGACAATCTGAGAGACTGCTTCTGT
GCAGGTATTGAGTGACGTGGAAGCACACGCGATAGAGCTCTCACTCTGGC
TTTGCGTCCTTAATTTGCTTGCATATACAGAGCAAATTTGCACCGGAAGA
GCTGGAGGTGCGGGGGCAGGTGGTAAATCAGATGCTGAGGGAGGTACAAG
AATTGAAGGAGGTCTCTCTGGCCGGCTATATTCGGAAAGGCAATGTCACT
GGGAATAACATGGCAGGCCTGATCGTGCCGATGGAGGAGTCGGAGGCGTT
CCAAGGGCCGATGGGTACGTTAATTTTCTCTGCTTTGGATTGCCGTAATC
CACGTCTCTATGAAGCTGCGTCTTTCTTGCATTGGTTCCCTCAACGGGCA
ACTCTCGAATGTCAATTAGCTCGTTTTCGTCCCCCCTCCCTCCTACCTTC
TCTCCCTACGTAGGCGCGATGCCCATGAACACAGGCATGACCGAAGACCA
CCGTGTGCAGTTGCAACAGATCCAACAGCGTGATAAGGATATGGACAGAC
ATTACCTCGATCAGATCGAGAGGGGCGTGGAGGACTTGAGAGATATAGCG
CTGAGGGCGAATGAGGTGAGGGATGGGGGGGGGTAGGGTTGGAAGGGAAG
GAAGGAAAGTATACCATAATTGAAATACCCATTTCTCCCTCCCCCCCTCC
CTCCCTCTCTGCATGCTTATCTTAGGGGGTTCGAACGACCAACGTGATGC
TCGAAAACCTCGAGCAAAAAATCATCGATGTCCAGGATCACCTCGATCGC
GTGAACAAAAAGATGAAGACGACCCTGCAGCAGGTTGGGCGACGGTCAGA
TAAGCTGTGCATCGACATCATTTGTATTGTAATTCTGCTGGGGATGATTG
GCTTGTTGTATAACCTGATGAAGAACAGTAAGAATTCTTGAGAATGAGCT
GCAGCGGTAGGAGCAGCAGATGTGGGATTTTGGAGTGGGGAGGGGGTGTG
GGTTTGGTTATCATGCAAAGAGGGAGGGGAGGAGGACGATAGTACAGAAG
ATGGGGCGTGCGAGAAAAAATCAAGCAAACGACTTCACGACAGTGCAATC
TGATCAGACGATTTCGATCCATCAATAAAACGTG
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Coding sequence (CDS) from alignment at chr2:722906..724839-

>NO02G02600.1 ID=NO02G02600.1|Name=NO02G02600.1|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at chr2:722906..724839- (Nannochloropsis oceanica)
ATGGATGCAGAGCTCGAGACTTTGCTTGCAGTCCTCAACGACATTCAGAA
AGCAGTGGGAGGCAAGGTCGTGAAGAAGGCCAAAGAGGGCGGCAAGGTGG
ATAAGTTCATGGACGTCAAGCAGACCATGATCGCACGCATTGTGGAGGTA
CGAAAGCTCATAGCCACGACCAGGAATCAGACGCCGGGTCAAGAACTGCA
ACCCAAGGAAGTCATCGCCTCCAATGCCCAAGTCCGAGAGTACCTGCGGC
AGTTGAACGAGGACTACAAGGAATTGGAACGATTGTTTTCGAAGGAAAAG
AACAAGCGGAAGAGCAAATTTGCACCGGAAGAGCTGGAGGTGCGGGGGCA
GGTGGTAAATCAGATGCTGAGGGAGGTACAAGAATTGAAGGAGGTCTCTC
TGGCCGGCTATATTCGGAAAGGCAATGTCACTGGGAATAACATGGCAGGC
CTGATCGTGCCGATGGAGGAGTCGGAGGCGTTCCAAGGGCCGATGGGCGC
GATGCCCATGAACACAGGCATGACCGAAGACCACCGTGTGCAGTTGCAAC
AGATCCAACAGCGTGATAAGGATATGGACAGACATTACCTCGATCAGATC
GAGAGGGGCGTGGAGGACTTGAGAGATATAGCGCTGAGGGCGAATGAGGG
GGTTCGAACGACCAACGTGATGCTCGAAAACCTCGAGCAAAAAATCATCG
ATGTCCAGGATCACCTCGATCGCGTGAACAAAAAGATGAAGACGACCCTG
CAGCAGGTTGGGCGACGGTCAGATAAGCTGTGCATCGACATCATTTGTAT
TGTAATTCTGCTGGGGATGATTGGCTTGTTGTATAACCTGATGAAGAACA
GTAAGAATTCTTGA
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Synonyms
Publications