NO02G02570.1, NO02G02570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02570.1
Unique NameNO02G02570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1810
Alignment locationchr2:717251..719188 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:717251..719188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02570.1 vs.
Match: EWM30385.1 (uncharacterized protein Naga_100026g46 [Nannochloropsis gaditana])

HSP 1 Score: 579.7 bits (1493), Expect = 8.100e-162
Identity = 289/414 (69.81%), Postives = 339/414 (81.88%), Query Frame = 0 
Query:   63 MPSQKSLLRVFLLTTGLSLALGFLVGLPAIPIPSSTRATS-FHRDATVVHAGPTLLPTKSMPGTQPAGLGSKVFLPAFLPPWIARDTVRTQVSEDIFFLEQAQTFVNVSVNIRSTIIRLKNGKLFVHAPVAPTAECISLLKDLGEVAYVVLPVTAVEHKVYMASFVAQFPKAKVYVAPGQFSWPLNLPLGFRVDGILTDENKEMMPFKDEIDYTGWFFRPFTGSISEVAFFHKKTKTLLVTDAVIWIDNAPPEILKQKGIAPNVWKKMALQACFLGPPNLDTFEEIKQKLIVSPVIRILVVSRAKREVRDWIARVCRWNFERIIPAHFSAPIKAGPKDLRDAYSFLEEEEGKEGANVAASPSPAFGFDLSAFNLGGVTGKGRK----RTVVFPEKDTKILDALNKFVSATGLAD 472
            MP +K L  + +   GL  A+GF+   P   + S+    S + RDAT+  A P LLPTK MP  QPAGLGSK +LPAFLPPWIARDTVRT+ S+DIFFLEQ+QTFVNVSVNIRST+IRLKNG LFVHAPVAPT EC+SL+K+LGEVAYVVLPVTA+EHKVYMA F + FPKAK+YVAPGQFSWP++LPLGFRVDG+LT+ENK+ MPF DEIDYTGW FRPFTGSISEVAFFH+K++TLLVTDA+IWID+ PPEIL+Q G+  ++WKKMALQACFLGPPNLDTF++IKQ+LIVSPVIR+LVVSRAK+EV +WI RVC W FER+IPAHFSAPIKAGP DL+DAY+FL  EEG+ GA+      P FGFD SA   G     GRK    ++V FPE+D KIL +LNKFVSATGLA+
Sbjct:    1 MPLRKKLGLLLVSACGLHTAVGFMAQNPNKVLLSTMPTVSPYGRDATIAWAAPVLLPTKPMPPVQPAGLGSKFYLPAFLPPWIARDTVRTKFSDDIFFLEQSQTFVNVSVNIRSTVIRLKNGDLFVHAPVAPTPECVSLIKELGEVAYVVLPVTAIEHKVYMARFASLFPKAKIYVAPGQFSWPVDLPLGFRVDGVLTEENKKSMPFIDEIDYTGWIFRPFTGSISEVAFFHRKSRTLLVTDAIIWIDDQPPEILRQAGVGQDLWKKMALQACFLGPPNLDTFQKIKQRLIVSPVIRVLVVSRAKKEVAEWIKRVCEWKFERVIPAHFSAPIKAGPVDLQDAYAFL--EEGETGADRGGKSLP-FGFDFSALWQGRQGAVGRKGRGGKSVQFPEQDLKILKSLNKFVSATGLAE 411
The following BLAST results are available for this feature:
BLAST of NO02G02570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30385.18.100e-16269.81uncharacterized protein Naga_100026g46 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02570NO02G02570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02570.1NO02G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02570.1.cds1NO02G02570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02570.1.cds2NO02G02570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02570.1 ID=NO02G02570.1|Name=NO02G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1810bp
GCCAGGTGAGTAGGGAGCTGCTGTGTATGGTAAAGAATGACTGCGGTGAG
GTCTCGTGTTGTGTGTTGTGCTGGGCAAGACAATGCTAGGTATCATCATG
CCTTGCTCTCTCCGGCAAACCGCTCGACGAATCAACGTGACTGATCGGCG
GACGTGCGCGTCCTCTTGCTTGTGTTCGGACTCACGCAGTAAGTCTTACT
CAGCCTCTCCACTACACCACACCACACCCGTATAAGCAGTATGAAAAGGA
TAATGACAGCAAGGCGCACTTTGCCTTCCCTGAGGTCGTCCGCCTGTCAT
CCTTTTGCCACTAGCCGACTTCACTCCACAGCCGCAGAGGCAGGAGGTCG
AGCTGGAACACCATCGTATACGTCATTCCGACACCTCACCCTCTTTCAAC
GCACAAACAAACAGGGGTGCAAGATGATGCCATCACAGAAGAGCCTTCTA
AGAGTATTCTTGCTTACTACCGGGCTTTCTCTAGCCTTAGGCTTTCTCGT
CGGCCTGCCCGCCATCCCCATCCCCTCTTCCACCCGTGCCACCTCATTCC
ACCGCGATGCCACTGTTGTGCACGCTGGCCCCACGCTCCTACCCACAAAG
TCCATGCCCGGCACACAGCCCGCGGGGTTGGGTTCTAAAGTCTTCCTTCC
CGCTTTTCTACCGCCCTGGATTGCGCGTGACACCGTTCGGACACAAGTCT
CCGAGGACATATTTTTTCTTGAACAGGCTCAAACATTTGTCAACGTCAGC
GTCAACATCCGATCGACCATCATCCGTCTCAAGAACGGCAAGCTCTTCGT
GCACGCCCCCGTCGCCCCAACAGCCGAGTGCATTTCCCTCCTCAAAGACT
TGGGGGAGGTTGCTTATGTGGTTTTACCCGTCACGGCGGTGGAGCACAAG
GTGTACATGGCGAGCTTTGTTGCCCAGTTTCCGAAAGCAAAAGTCTATGT
TGCTCCCGGTCAGTTTAGCTGGCCGTTGAATTTACCCCTTGGGTTTCGGG
TGGATGGGATTCTGACGGATGAAAATAAGGAAATGATGCCTTTTAAGGAC
GAAATTGATTACACTGGCTGGTTCTTCAGGCCCTTCACAGGCTCGATAAG
CGAAGTGGCGTTTTTCCATAAGAAGACCAAGACATTGCTCGTCACTGACG
CTGTCATTTGGATCGATAATGCCCCCCCAGAGATCCTCAAACAGAAGGGA
ATCGCGCCGAATGTGTGGAAAAAGATGGCTTTGCAAGCCTGCTTTCTTGG
CCCTCCCAACCTCGATACCTTTGAAGAGATAAAGCAAAAACTGATTGTTT
CCCCTGTCATTCGTATTTTGGTCGTATCGCGGGCGAAGAGGGAGGTGAGG
GATTGGATTGCCAGAGTGTGTCGGTGGAATTTCGAGAGGATTATCCCTGC
TCATTTCTCGGCGCCGATCAAAGCGGGGCCTAAAGACTTGAGGGATGCAT
ATTCCTTCTTGGAGGAGGAGGAAGGAAAGGAGGGAGCGAATGTTGCGGCG
TCACCATCACCGGCATTTGGGTTTGATTTGTCAGCGTTTAATCTGGGTGG
AGTTACGGGGAAGGGGCGGAAGAGGACGGTTGTGTTTCCGGAGAAGGATA
CCAAGATTTTGGACGCGCTGAATAAGTTCGTTAGTGCGACGGGCTTAGCC
GACTAAGGAAGGGAGAGATTTTTTGTCTTTTTGAAACAGACACACACTTT
TATGTATACAAAGATAATGCATATGCGATGGGGGAGAATGATATGTAGAG
GGCAGACGCCTGCTTTTTTGAAAAACGCACAAAAAGAATAAACACTGCAC
AATTAGGAAC
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protein sequence of NO02G02570.1

>NO02G02570.1-protein ID=NO02G02570.1-protein|Name=NO02G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MKRIMTARRTLPSLRSSACHPFATSRLHSTAAEAGGRAGTPSYTSFRHLT
LFQRTNKQGCKMMPSQKSLLRVFLLTTGLSLALGFLVGLPAIPIPSSTRA
TSFHRDATVVHAGPTLLPTKSMPGTQPAGLGSKVFLPAFLPPWIARDTVR
TQVSEDIFFLEQAQTFVNVSVNIRSTIIRLKNGKLFVHAPVAPTAECISL
LKDLGEVAYVVLPVTAVEHKVYMASFVAQFPKAKVYVAPGQFSWPLNLPL
GFRVDGILTDENKEMMPFKDEIDYTGWFFRPFTGSISEVAFFHKKTKTLL
VTDAVIWIDNAPPEILKQKGIAPNVWKKMALQACFLGPPNLDTFEEIKQK
LIVSPVIRILVVSRAKREVRDWIARVCRWNFERIIPAHFSAPIKAGPKDL
RDAYSFLEEEEGKEGANVAASPSPAFGFDLSAFNLGGVTGKGRKRTVVFP
EKDTKILDALNKFVSATGLAD*
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mRNA from alignment at chr2:717251..719188-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02570.1 ID=NO02G02570.1|Name=NO02G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1938bp|location=Sequence derived from alignment at chr2:717251..719188- (Nannochloropsis oceanica)
GCCAGGTGAGTAGGGAGCTGCTGTGTATGGTAAAGAATGACTGCGGTGAG
GTCTCGTGTTGTGTGTTGTGCTGGGCAAGACAATGCTAGGTATCATCATG
CCTTGCTCTCTCCGGCAAACCGCTCGACGAATCAACGTGACTGATCGGCG
GACGTGCGCGTCCTCTTGCTTGTGTTCGGACTCACGCAGTAAGTCTTACT
CAGCCTCTCCACTACACCACACCACACCCGTATAAGCAGTATGAAAAGGA
TAATGACAGCAAGGCGCACTTTGCCTTCCCTGAGGTCGTCCGCCTGTCAT
CCTTTTGCCACTAGCCGACTTCACTCCACAGCCGCAGAGGCAGGAGGTCG
AGCTGGAACACCATCGTATACGTCATTCCGACACCTCACCCTCTTTCAAC
GCACAAACAAACAGGGGTGCAAGATGATGCCATCACAGAAGAGCCTTCTA
AGAGTATTCTTGCTTACTACCGGGCTTTCTCTAGCCTTAGGCTTTCTCGT
CGGCCTGCCCGCCATCCCCATCCCCTCTTCCACCCGTGCCACCTCATTCC
ACCGCGATGCCACTGTTGTGCACGCTGGCCCCACGCTCCTACCCACAAAG
TCCATGCCCGGCACACAGCCCGCGGGGTTGGGTTCTAAAGTCTTCCTTCC
CGCTTTTCTACCGCCCTGGATTGCGCGTGACACCGTTCGGACACAAGTCT
CCGAGGACATATTTTTTCTTGAACAGGTATGTCCTCACACCCTTTCACTT
CCTCCCCTTCTTCCTCCTCCAGATGGCTTTTTGTCATATCGAATTAAATA
GGAATGGAAATTTTTGAATTCAGTGCATCCCTCCTCCCCTCCTCCCTCCC
CTAGGCTCAAACATTTGTCAACGTCAGCGTCAACATCCGATCGACCATCA
TCCGTCTCAAGAACGGCAAGCTCTTCGTGCACGCCCCCGTCGCCCCAACA
GCCGAGTGCATTTCCCTCCTCAAAGACTTGGGGGAGGTTGCTTATGTGGT
TTTACCCGTCACGGCGGTGGAGCACAAGGTGTACATGGCGAGCTTTGTTG
CCCAGTTTCCGAAAGCAAAAGTCTATGTTGCTCCCGGTCAGTTTAGCTGG
CCGTTGAATTTACCCCTTGGGTTTCGGGTGGATGGGATTCTGACGGATGA
AAATAAGGAAATGATGCCTTTTAAGGACGAAATTGATTACACTGGCTGGT
TCTTCAGGCCCTTCACAGGCTCGATAAGCGAAGTGGCGTTTTTCCATAAG
AAGACCAAGACATTGCTCGTCACTGACGCTGTCATTTGGATCGATAATGC
CCCCCCAGAGATCCTCAAACAGAAGGGAATCGCGCCGAATGTGTGGAAAA
AGATGGCTTTGCAAGCCTGCTTTCTTGGCCCTCCCAACCTCGATACCTTT
GAAGAGATAAAGCAAAAACTGATTGTTTCCCCTGTCATTCGTATTTTGGT
CGTATCGCGGGCGAAGAGGGAGGTGAGGGATTGGATTGCCAGAGTGTGTC
GGTGGAATTTCGAGAGGATTATCCCTGCTCATTTCTCGGCGCCGATCAAA
GCGGGGCCTAAAGACTTGAGGGATGCATATTCCTTCTTGGAGGAGGAGGA
AGGAAAGGAGGGAGCGAATGTTGCGGCGTCACCATCACCGGCATTTGGGT
TTGATTTGTCAGCGTTTAATCTGGGTGGAGTTACGGGGAAGGGGCGGAAG
AGGACGGTTGTGTTTCCGGAGAAGGATACCAAGATTTTGGACGCGCTGAA
TAAGTTCGTTAGTGCGACGGGCTTAGCCGACTAAGGAAGGGAGAGATTTT
TTGTCTTTTTGAAACAGACACACACTTTTATGTATACAAAGATAATGCAT
ATGCGATGGGGGAGAATGATATGTAGAGGGCAGACGCCTGCTTTTTTGAA
AAACGCACAAAAAGAATAAACACTGCACAATTAGGAAC
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Coding sequence (CDS) from alignment at chr2:717251..719188-

>NO02G02570.1 ID=NO02G02570.1|Name=NO02G02570.1|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at chr2:717251..719188- (Nannochloropsis oceanica)
ATGAAAAGGATAATGACAGCAAGGCGCACTTTGCCTTCCCTGAGGTCGTC
CGCCTGTCATCCTTTTGCCACTAGCCGACTTCACTCCACAGCCGCAGAGG
CAGGAGGTCGAGCTGGAACACCATCGTATACGTCATTCCGACACCTCACC
CTCTTTCAACGCACAAACAAACAGGGGTGCAAGATGATGCCATCACAGAA
GAGCCTTCTAAGAGTATTCTTGCTTACTACCGGGCTTTCTCTAGCCTTAG
GCTTTCTCGTCGGCCTGCCCGCCATCCCCATCCCCTCTTCCACCCGTGCC
ACCTCATTCCACCGCGATGCCACTGTTGTGCACGCTGGCCCCACGCTCCT
ACCCACAAAGTCCATGCCCGGCACACAGCCCGCGGGGTTGGGTTCTAAAG
TCTTCCTTCCCGCTTTTCTACCGCCCTGGATTGCGCGTGACACCGTTCGG
ACACAAGTCTCCGAGGACATATTTTTTCTTGAACAGGCTCAAACATTTGT
CAACGTCAGCGTCAACATCCGATCGACCATCATCCGTCTCAAGAACGGCA
AGCTCTTCGTGCACGCCCCCGTCGCCCCAACAGCCGAGTGCATTTCCCTC
CTCAAAGACTTGGGGGAGGTTGCTTATGTGGTTTTACCCGTCACGGCGGT
GGAGCACAAGGTGTACATGGCGAGCTTTGTTGCCCAGTTTCCGAAAGCAA
AAGTCTATGTTGCTCCCGGTCAGTTTAGCTGGCCGTTGAATTTACCCCTT
GGGTTTCGGGTGGATGGGATTCTGACGGATGAAAATAAGGAAATGATGCC
TTTTAAGGACGAAATTGATTACACTGGCTGGTTCTTCAGGCCCTTCACAG
GCTCGATAAGCGAAGTGGCGTTTTTCCATAAGAAGACCAAGACATTGCTC
GTCACTGACGCTGTCATTTGGATCGATAATGCCCCCCCAGAGATCCTCAA
ACAGAAGGGAATCGCGCCGAATGTGTGGAAAAAGATGGCTTTGCAAGCCT
GCTTTCTTGGCCCTCCCAACCTCGATACCTTTGAAGAGATAAAGCAAAAA
CTGATTGTTTCCCCTGTCATTCGTATTTTGGTCGTATCGCGGGCGAAGAG
GGAGGTGAGGGATTGGATTGCCAGAGTGTGTCGGTGGAATTTCGAGAGGA
TTATCCCTGCTCATTTCTCGGCGCCGATCAAAGCGGGGCCTAAAGACTTG
AGGGATGCATATTCCTTCTTGGAGGAGGAGGAAGGAAAGGAGGGAGCGAA
TGTTGCGGCGTCACCATCACCGGCATTTGGGTTTGATTTGTCAGCGTTTA
ATCTGGGTGGAGTTACGGGGAAGGGGCGGAAGAGGACGGTTGTGTTTCCG
GAGAAGGATACCAAGATTTTGGACGCGCTGAATAAGTTCGTTAGTGCGAC
GGGCTTAGCCGACTAA
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Synonyms
Publications