NO02G02530.1, NO02G02530.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G02530.1
Unique Name	NO02G02530.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1878
Alignment location	chr2:708442..710864 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:708442..710864 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G02530.1 vs.
Match: EWM30383.1 (aldo keto reductase family protein [Nannochloropsis gaditana])

HSP 1 Score: 894.0 bits (2309), Expect = 2.200e-256
Identity = 443/540 (82.04%), Postives = 482/540 (89.26%), Query Frame = 0

Query:    1 MQRWSRAVALGVVV-LTCGPRSTNVAEAFTMPATGSKRSVETGMRDSMTASTMTTMRRRSENLAPLFSIRTGGAGTPGMDDDKTGYGPELIQDPDASMSPEEWEAKYGEEVDTMVLYDEKDLERRRIDAIRVAKYMDVMGAAKSGEPHPRIAMAAKAHKVKEVKRLTHGMLYRRLGKSDLIVSEVALGTMTWGEQVTEEQAHAQLNMAVDEYGVNFIDTAELYPVPADPDTHGLSEKIVGSWLKKRKRSDVIIATKVTGYSDVLTWLRKDGGPVRLTAAQINEAVEGSLKRLGTDYIDLLQLHWPDRYLNLFGVDLYDRSREREDFVSFEEQLTALSKLIKDGKIRHIGLSNESPYGVMKFLETARVLGMEEVVSVQNCYNLLYRNEMDMGLSEISSPAHEDLGILCYSPLAGGVLSGKYMFKGRASEARLNRFPGYMARYRTLQSQDCVFEYKEIASRYGLSMGQLALGWVYSRPFVTSTIIGATSVDQLRENLDALNTPIFSQVVHDLSEVFMRYRDPSRTFARVLDDGDTGTDERVR 540
            M  WS+ + L     ++C  +S+  A AF++    S +      RD  TA   T      ++L PL+SIRTGGAGTPGMDD+KTGYGPELI+DPDA+++PEEWE KYGEEVDT VLYDEKDLERRRIDAIRVAKYMDVM + K GEPHPR+A+AA+A+K K++KRLTHGMLYR+LGKSDLIVSEVALGTMTWGEQVTEEQAHAQLNMA DEYGVN IDTAELYPVPADPDTHGLSEKI+GSWLKKR R DVI+ATKVTGYSDVLTWLR+DGGPVRLTA QI EA+EGSL+RLGTDYIDL QLHWPDRYLNLFGVDLYD+SRERED VSFEEQLTAL KL+K GKIR+IGLSNESPYGVMKFLETAR LG++EVVSVQNCYNLLYRNEMDMGLSEI SP+HEDLG+LCYSPLAGGVLSGKYMFKGRASEARLNRFPGYMARYRTLQSQDCVFEYKEIASRYGL+M QLALGWVYSRPFVTSTI+GATSVDQLRENLDALNTPIFS VVHDLSEVFMRYRDPSRTFARVLDDGDTGTDER R
Sbjct:   21 MPTWSKTLVLAAATGISCSCKSSITAAAFSVLGPRSIQQSGWTCRDWGTARART-----KDSLLPLYSIRTGGAGTPGMDDEKTGYGPELIEDPDAALTPEEWEKKYGEEVDTTVLYDEKDLERRRIDAIRVAKYMDVMDSPKVGEPHPRVALAARAYKKKDIKRLTHGMLYRKLGKSDLIVSEVALGTMTWGEQVTEEQAHAQLNMAFDEYGVNLIDTAELYPVPADPDTHGLSEKIIGSWLKKRNREDVILATKVTGYSDVLTWLREDGGPVRLTAGQITEAIEGSLRRLGTDYIDLAQLHWPDRYLNLFGVDLYDQSREREDVVSFEEQLTALGKLVKAGKIRYIGLSNESPYGVMKFLETARRLGLQEVVSVQNCYNLLYRNEMDMGLSEICSPSHEDLGVLCYSPLAGGVLSGKYMFKGRASEARLNRFPGYMARYRTLQSQDCVFEYKEIASRYGLTMAQLALGWVYSRPFVTSTIVGATSVDQLRENLDALNTPIFSNVVHDLSEVFMRYRDPSRTFARVLDDGDTGTDERQR 555

The following BLAST results are available for this feature:

BLAST of NO02G02530.1 vs.

BLAST of NO02G02530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30383.1	2.200e-256	82.04	aldo keto reductase family protein [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G02530	NO02G02530	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G02530.1	NO02G02530.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G02530.1.cds1	NO02G02530.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G02530.1.cds2	NO02G02530.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G02530.1.cds3	NO02G02530.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G02530.1.cds4	NO02G02530.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:708442..710864-
coding sequence from alignment at chr2:708442..710864-

mRNA sequence

>NO02G02530.1 ID=NO02G02530.1|Name=NO02G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1878bp
CAGGACAGCATCAGTACGTCTAGGAGCTTGTCTGTCTTACATAAGGGGGG
AGGGGAAATGCAAAGGTGGTCGAGAGCGGTCGCGCTTGGCGTGGTAGTTT
TGACGTGCGGCCCACGCAGCACCAATGTGGCAGAGGCGTTTACCATGCCA
GCCACAGGGAGTAAACGAAGCGTGGAAACGGGGATGAGGGACAGTATGAC
AGCAAGTACAATGACAACAATGAGGAGGAGGAGCGAGAATCTGGCGCCGC
TGTTTTCCATTCGCACGGGCGGCGCAGGCACACCGGGAATGGACGACGAT
AAGACCGGGTACGGGCCCGAGTTGATTCAAGACCCAGACGCGTCTATGAG
CCCAGAGGAGTGGGAGGCCAAGTACGGAGAGGAAGTAGATACGATGGTTT
TGTACGACGAGAAGGACCTGGAGCGCAGACGAATCGACGCCATCCGTGTT
GCCAAATACATGGACGTGATGGGCGCGGCCAAGAGTGGGGAACCGCACCC
GCGCATTGCCATGGCCGCCAAGGCTCACAAGGTCAAGGAGGTCAAGCGCC
TAACCCATGGCATGCTTTATCGAAGGCTCGGCAAGAGCGACCTGATTGTC
TCTGAGGTAGCCCTAGGGACAATGACCTGGGGGGAGCAAGTAACAGAGGA
GCAGGCCCACGCCCAACTCAACATGGCCGTGGATGAATATGGGGTCAATT
TTATCGATACCGCCGAGCTGTATCCTGTCCCGGCTGACCCGGATACACAT
GGATTGAGCGAAAAGATCGTTGGGTCGTGGCTGAAGAAACGGAAGAGGTC
AGACGTGATAATTGCGACCAAAGTCACGGGATACAGTGATGTGTTGACCT
GGTTAAGGAAAGATGGGGGGCCTGTGAGACTGACGGCGGCGCAAATAAAT
GAAGCAGTGGAGGGTAGTTTGAAGAGGCTGGGTACAGATTATATCGACTT
GCTGCAGTTACATTGGCCGGATCGGTATTTGAATTTGTTTGGGGTGGATC
TCTACGATCGATCGCGCGAGCGCGAAGACTTCGTCAGCTTCGAAGAGCAA
CTCACTGCCCTTAGCAAGCTGATTAAGGACGGTAAGATCCGCCACATAGG
CCTGAGCAACGAAAGCCCCTATGGCGTGATGAAATTCCTGGAAACCGCCC
GTGTCCTGGGCATGGAAGAAGTTGTCTCCGTCCAAAATTGTTACAATCTC
CTCTACCGGAACGAGATGGACATGGGTCTTTCCGAGATCTCTTCTCCCGC
TCACGAAGATCTGGGCATTCTCTGCTACTCCCCTCTAGCTGGTGGGGTGC
TCTCGGGAAAGTACATGTTCAAGGGACGAGCGTCTGAGGCGCGTTTGAAT
CGCTTTCCGGGTTACATGGCTCGCTATCGTACGCTTCAGAGCCAGGATTG
TGTCTTTGAGTACAAGGAGATTGCGTCTCGGTATGGACTATCCATGGGGC
AGCTTGCATTGGGCTGGGTGTATTCCCGGCCGTTTGTGACTTCCACGATT
ATTGGGGCGACGAGTGTGGACCAATTGAGGGAGAATTTGGATGCGTTGAA
CACGCCAATTTTCTCGCAGGTCGTGCACGATTTGTCAGAAGTGTTCATGC
GGTATCGGGACCCGAGTCGGACCTTCGCTCGGGTGCTCGATGATGGTGAT
ACGGGGACGGATGAGCGGGTAAGGTAAATCTGAAGAAAGAAGAAGAAAAA
AAGAGATGAGAGGTGTCTTGAGAGGAAATAGAAAAGGCTCCTCGCCCCAC
ATACAACAAAAGTATTTTTGCACCCACGTTCACACAATGAGGGGAGAGCC
AGCGAGGTTGTGGATGCAATGCAGACGTCTATAAGGTGAGCGAAAGAGGG
AAGACGAGAGAAAGATAATCAAATACGC

protein sequence of NO02G02530.1

>NO02G02530.1-protein ID=NO02G02530.1-protein|Name=NO02G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp
MQRWSRAVALGVVVLTCGPRSTNVAEAFTMPATGSKRSVETGMRDSMTAS
TMTTMRRRSENLAPLFSIRTGGAGTPGMDDDKTGYGPELIQDPDASMSPE
EWEAKYGEEVDTMVLYDEKDLERRRIDAIRVAKYMDVMGAAKSGEPHPRI
AMAAKAHKVKEVKRLTHGMLYRRLGKSDLIVSEVALGTMTWGEQVTEEQA
HAQLNMAVDEYGVNFIDTAELYPVPADPDTHGLSEKIVGSWLKKRKRSDV
IIATKVTGYSDVLTWLRKDGGPVRLTAAQINEAVEGSLKRLGTDYIDLLQ
LHWPDRYLNLFGVDLYDRSREREDFVSFEEQLTALSKLIKDGKIRHIGLS
NESPYGVMKFLETARVLGMEEVVSVQNCYNLLYRNEMDMGLSEISSPAHE
DLGILCYSPLAGGVLSGKYMFKGRASEARLNRFPGYMARYRTLQSQDCVF
EYKEIASRYGLSMGQLALGWVYSRPFVTSTIIGATSVDQLRENLDALNTP
IFSQVVHDLSEVFMRYRDPSRTFARVLDDGDTGTDERVR*

mRNA from alignment at chr2:708442..710864-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G02530.1 ID=NO02G02530.1|Name=NO02G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2423bp|location=Sequence derived from alignment at chr2:708442..710864- (Nannochloropsis oceanica)
CAGGACAGCATCAGTACGTCTAGGAGCTTGTCTGTCTTACATAAGGGGGG
AGGGGAAATGCAAAGGTGGTCGAGAGCGGTCGCGCTTGGCGTGGTAGTTT
TGACGTGCGGCCCACGCAGCACCAATGTGGCAGAGGCGTTTACCATGCCA
GCCACAGGGAGTAAACGAAGCGTGGAAACGGGGATGAGGGACAGTATGAC
AGCAAGTACAATGACAACAATGAGGAGGAGGAGCGAGAATCTGGCGCCGC
TGTTTTCCATTCGCACGGGCGGCGCAGGCACACCGGGAATGGACGACGAT
AAGACCGGGTACGGGCCCGAGTTGATTCAAGACCCAGACGCGTCTATGAG
CCCAGAGGAGTGGGAGGCCAAGTACGGAGAGGAAGTAGATACGATGGTTT
TGTACGACGAGAAGGTACGTGAGGTTGTAAATCGATGGTTGTGGTGGGTG
AAGAGCGTTGACCCAAGATGGGCACTGCCCAAGCGTCTTCCTTTCCAATC
GAGCATGCCTTGCATTACTCGACGTACCCGACCAACAACATCATACAATA
CCTCTCAATTTGTAGGACCTGGAGCGCAGACGAATCGACGCCATCCGTGT
TGCCAAATACATGGACGTGATGGGCGCGGCCAAGAGTGGGGAACCGCACC
CGCGCATTGCCATGGCCGCCAAGGCTCACAAGGTCAAGGAGGTCAAGGTA
CGTAGGAATGGGTTTTAGGAGAATTGTTGAGTGTCACATGGGCATTCGTC
GCGGGGCGGGCTTTTCCCCCTGTTCACACTTCGCTCGTTTGATTAGCTTT
CATCGTCCGTGCTTCTCTCGCCAGTCTGCACGCCCTAACCCGATTCTCAC
TCCACCTTCTTCTTCCGGCCCCTCGTATCCATCCAACTTGCAAATCAGCG
CCTAACCCATGGCATGCTTTATCGAAGGCTCGGCAAGAGCGACCTGATTG
TCTCTGAGGTAGCCCTAGGGACAATGACCTGGGGGGAGCAAGTAACAGAG
GAGCAGGCCCACGCCCAACTCAACATGGCCGTGGATGAATATGGGGTCAA
TTTTATCGATACCGCCGAGCTGTATCCTGTCCCGGCTGACCCGGATACAC
ATGGATTGAGCGAAAAGATCGTTGGGTCGTGGCTGAAGAAACGGAAGAGG
TCAGACGTGATAATTGCGACCAAAGTCACGGGATACAGTGATGTGTTGAC
CTGGTTAAGGAAAGATGGGGGGCCTGTGAGACTGACGGCGGCGCAAATAA
ATGAAGCAGTGGAGGGTAGTTTGAAGAGGCTGGGTACAGATTATATCGAC
TTGCTGCAGTTACATTGGCCGGATCGGTATTTGAATTTGTTTGGGGTGGA
TCTCTACGATCGATCGGTGAGTGCCGTTTTGCCCTTTCCTTTCGTCTTTC
CACTTTGTGGGCCTGTTGGAGGGAGACTTAGGTAGGGGGGAGGAAGGAGA
GGCAAGGGAAAGGAGAGAAGGAAGAAAACGATGTCAGACTTAATGCTTAC
ATGCACATGTTATACATCTCATCCGATTCGTCTTTCTCGACTTTTTCTCA
ACTACACAGCGCGAGCGCGAAGACTTCGTCAGCTTCGAAGAGCAACTCAC
TGCCCTTAGCAAGCTGATTAAGGACGGTAAGATCCGCCACATAGGCCTGA
GCAACGAAAGCCCCTATGGCGTGATGAAATTCCTGGAAACCGCCCGTGTC
CTGGGCATGGAAGAAGTTGTCTCCGTCCAAAATTGTTACAATCTCCTCTA
CCGGAACGAGATGGACATGGGTCTTTCCGAGATCTCTTCTCCCGCTCACG
AAGATCTGGGCATTCTCTGCTACTCCCCTCTAGCTGGTGGGGTGCTCTCG
GGAAAGTACATGTTCAAGGGACGAGCGTCTGAGGCGCGTTTGAATCGCTT
TCCGGGTTACATGGCTCGCTATCGTACGCTTCAGAGCCAGGATTGTGTCT
TTGAGTACAAGGAGATTGCGTCTCGGTATGGACTATCCATGGGGCAGCTT
GCATTGGGCTGGGTGTATTCCCGGCCGTTTGTGACTTCCACGATTATTGG
GGCGACGAGTGTGGACCAATTGAGGGAGAATTTGGATGCGTTGAACACGC
CAATTTTCTCGCAGGTCGTGCACGATTTGTCAGAAGTGTTCATGCGGTAT
CGGGACCCGAGTCGGACCTTCGCTCGGGTGCTCGATGATGGTGATACGGG
GACGGATGAGCGGGTAAGGTAAATCTGAAGAAAGAAGAAGAAAAAAAGAG
ATGAGAGGTGTCTTGAGAGGAAATAGAAAAGGCTCCTCGCCCCACATACA
ACAAAAGTATTTTTGCACCCACGTTCACACAATGAGGGGAGAGCCAGCGA
GGTTGTGGATGCAATGCAGACGTCTATAAGGTGAGCGAAAGAGGGAAGAC
GAGAGAAAGATAATCAAATACGC

Coding sequence (CDS) from alignment at chr2:708442..710864-

>NO02G02530.1 ID=NO02G02530.1|Name=NO02G02530.1|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at chr2:708442..710864- (Nannochloropsis oceanica)
ATGCAAAGGTGGTCGAGAGCGGTCGCGCTTGGCGTGGTAGTTTTGACGTG
CGGCCCACGCAGCACCAATGTGGCAGAGGCGTTTACCATGCCAGCCACAG
GGAGTAAACGAAGCGTGGAAACGGGGATGAGGGACAGTATGACAGCAAGT
ACAATGACAACAATGAGGAGGAGGAGCGAGAATCTGGCGCCGCTGTTTTC
CATTCGCACGGGCGGCGCAGGCACACCGGGAATGGACGACGATAAGACCG
GGTACGGGCCCGAGTTGATTCAAGACCCAGACGCGTCTATGAGCCCAGAG
GAGTGGGAGGCCAAGTACGGAGAGGAAGTAGATACGATGGTTTTGTACGA
CGAGAAGGACCTGGAGCGCAGACGAATCGACGCCATCCGTGTTGCCAAAT
ACATGGACGTGATGGGCGCGGCCAAGAGTGGGGAACCGCACCCGCGCATT
GCCATGGCCGCCAAGGCTCACAAGGTCAAGGAGGTCAAGCGCCTAACCCA
TGGCATGCTTTATCGAAGGCTCGGCAAGAGCGACCTGATTGTCTCTGAGG
TAGCCCTAGGGACAATGACCTGGGGGGAGCAAGTAACAGAGGAGCAGGCC
CACGCCCAACTCAACATGGCCGTGGATGAATATGGGGTCAATTTTATCGA
TACCGCCGAGCTGTATCCTGTCCCGGCTGACCCGGATACACATGGATTGA
GCGAAAAGATCGTTGGGTCGTGGCTGAAGAAACGGAAGAGGTCAGACGTG
ATAATTGCGACCAAAGTCACGGGATACAGTGATGTGTTGACCTGGTTAAG
GAAAGATGGGGGGCCTGTGAGACTGACGGCGGCGCAAATAAATGAAGCAG
TGGAGGGTAGTTTGAAGAGGCTGGGTACAGATTATATCGACTTGCTGCAG
TTACATTGGCCGGATCGGTATTTGAATTTGTTTGGGGTGGATCTCTACGA
TCGATCGCGCGAGCGCGAAGACTTCGTCAGCTTCGAAGAGCAACTCACTG
CCCTTAGCAAGCTGATTAAGGACGGTAAGATCCGCCACATAGGCCTGAGC
AACGAAAGCCCCTATGGCGTGATGAAATTCCTGGAAACCGCCCGTGTCCT
GGGCATGGAAGAAGTTGTCTCCGTCCAAAATTGTTACAATCTCCTCTACC
GGAACGAGATGGACATGGGTCTTTCCGAGATCTCTTCTCCCGCTCACGAA
GATCTGGGCATTCTCTGCTACTCCCCTCTAGCTGGTGGGGTGCTCTCGGG
AAAGTACATGTTCAAGGGACGAGCGTCTGAGGCGCGTTTGAATCGCTTTC
CGGGTTACATGGCTCGCTATCGTACGCTTCAGAGCCAGGATTGTGTCTTT
GAGTACAAGGAGATTGCGTCTCGGTATGGACTATCCATGGGGCAGCTTGC
ATTGGGCTGGGTGTATTCCCGGCCGTTTGTGACTTCCACGATTATTGGGG
CGACGAGTGTGGACCAATTGAGGGAGAATTTGGATGCGTTGAACACGCCA
ATTTTCTCGCAGGTCGTGCACGATTTGTCAGAAGTGTTCATGCGGTATCG
GGACCCGAGTCGGACCTTCGCTCGGGTGCTCGATGATGGTGATACGGGGA
CGGATGAGCGGGTAAGGTAA

Synonyms

Publications