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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:692310..694317 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02510.1 vs.
Match: EWM30367.1 (tbc1 domain member 20 [Nannochloropsis gaditana]) HSP 1 Score: 544.3 bits (1401), Expect = 3.400e-151 Identity = 277/421 (65.80%), Postives = 328/421 (77.91%), Query Frame = 0
Query: 1 MSED-ARRNGRSTSMAQREKAIRDLIVQNPVPLEKLRALALAPGDGFCNNALRSVIWPKLLGLNRFESQPSFHDQVARNQWSDQIGRDVARSLWHYHMPHAKKRKRGSRRRLLAKMINALMSKHPTLHYYQGFHDVLSVLVLVMTEDDDLCFAVAERVALYYLGDYTRRPDFSVLTPLLELLLPLVEAADGDVGACLRACGIHAYVCLPWVIAWWAHDCHNLEITARLFDAFLSGPPLFPLYLAAAMILEAKTELFALEDKDFSAVHSFLSRLASRPDLPVETLIARAHRLLLSLPPAKLVRLHGHPFLRDLARKKEVHALNFPHVEWYKKEAPPDWLLREDRRREEGRSVRCKHTRQRRRQAYLAGVQMPSAAGVVGNEKKGA----LWSSASSPPSSTSLWVAAAAVVGVAAVLFKLGE 417
MSE+ A +AQ+ K I+ LIVQNPVPL++LR+LAL+ GF +N LR VIWPKLLG NRFE +P F + VARNQWSDQI RDVARSLWHY +P AKKRKRG RRRLLA M+NALM+K TLHYYQG HDV SV VLV+TED DLCFAVAERVAL+++GD+TRR DFSVL PLL+LL+PL+EA D DVG+CLRACG+HAYVCLPWVIAWWAHDCH+L + ARLFDAFLS PPLFP+Y+AAA+ILE K++LFALE +DFSAVH FLSRL S+PDLPVE ++ARAH +L + PPAKLV+ G PFLR+LAR +EVH LNFP WY++EA PDW+L E+RRR + R VR KHTR+RRRQA+LAGV MP+ E A W+ S S S VA AA+VG AV+ KL E
Sbjct: 1 MSENGAGAKSSKCDIAQKIKVIQALIVQNPVPLDELRSLALSSDGGFISNDLRQVIWPKLLGFNRFELRPPFQNYVARNQWSDQISRDVARSLWHYRLPQAKKRKRGGRRRLLADMVNALMAKDSTLHYYQGLHDVFSVFVLVLTEDPDLCFAVAERVALFFMGDFTRRSDFSVLIPLLDLLIPLIEAFDADVGSCLRACGLHAYVCLPWVIAWWAHDCHDLAMIARLFDAFLSAPPLFPIYVAAALILEGKSDLFALESRDFSAVHRFLSRLPSQPDLPVEAILARAHGMLQAFPPAKLVQSQGSPFLRELARSREVHGLNFP-PPWYQREALPDWILLENRRRRDKRVVRSKHTRERRRQAHLAGVSMPAPPAKSPPEGPRAFGDRFWTYVSPSASFASTLVACAALVGCMAVILKLSE 420
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02510.1 ID=NO02G02510.1|Name=NO02G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1774bp TGCAAGTCTGAGGTGCAACAGTCAAGTGGTCCGCCGCACTAACACAGCAC ACACACAAGATACAGGTGTGCACTGATAGGAAAGGAGCAGCAACAATACG AACGTCTCGTTGTCTACCTGCCCTGGAGCTGGAGTCTCGCTAGTGGCCAC TCGTTGACTTAGCCAGCCGAGAGCCTCCCTCCCTCCCTCCCTCCCACCCC GCTATCCGCCCACAATCCCTAGGGGCTGCCCTGGCACTCAATGTCTGAGG ATGCCAGAAGAAACGGCCGCAGTACCTCCATGGCACAAAGAGAGAAGGCC ATTCGAGATCTCATCGTCCAAAATCCTGTGCCTTTGGAGAAGCTTAGGGC CTTGGCCCTGGCCCCCGGTGATGGATTCTGTAACAATGCGCTTCGATCCG TGATATGGCCAAAGCTATTGGGCCTCAACCGCTTCGAATCTCAGCCCTCC TTCCATGACCAAGTGGCGCGCAATCAATGGAGTGACCAAATCGGGCGTGA CGTCGCTCGCTCGCTCTGGCACTACCACATGCCGCATGCCAAGAAGCGGA AGCGAGGGAGTCGAAGAAGGCTGCTAGCGAAGATGATCAACGCCTTGATG AGCAAGCATCCGACTCTTCACTACTATCAAGGTTTTCACGACGTCCTCTC TGTCCTCGTCCTCGTCATGACTGAAGACGATGATCTTTGCTTCGCAGTTG CTGAGCGGGTAGCCCTCTACTATCTAGGTGATTATACCCGCCGACCAGAC TTCTCTGTGCTCACCCCTCTATTAGAACTGCTTCTCCCCCTCGTCGAAGC TGCTGATGGCGACGTCGGTGCTTGCCTCCGGGCGTGTGGCATCCACGCAT ACGTGTGCTTGCCATGGGTCATTGCTTGGTGGGCGCATGATTGTCATAAT CTCGAAATAACAGCTCGATTGTTCGATGCCTTTCTGTCAGGCCCTCCCTT ATTTCCTCTCTACCTTGCCGCCGCCATGATCCTGGAAGCCAAAACCGAGC TTTTTGCTTTGGAGGACAAGGACTTCTCCGCAGTCCACTCCTTCCTCTCC CGCCTTGCCTCCCGTCCCGACTTACCGGTGGAAACCCTCATCGCCCGTGC ACATCGCTTGCTTCTCTCCCTTCCTCCTGCCAAACTCGTTCGACTGCATG GTCACCCTTTCTTGAGAGACCTGGCGAGGAAGAAAGAAGTGCACGCTTTG AATTTTCCTCATGTGGAATGGTATAAAAAAGAAGCTCCCCCTGATTGGTT GCTGCGCGAAGATCGACGACGGGAGGAAGGACGGAGTGTCCGGTGCAAAC ACACGAGACAGCGACGCCGACAGGCTTACCTAGCGGGAGTCCAGATGCCA TCAGCGGCGGGTGTTGTGGGTAACGAGAAAAAAGGGGCGTTGTGGTCGTC GGCTTCGTCGCCGCCTTCCTCCACCTCACTCTGGGTGGCTGCGGCGGCCG TGGTGGGGGTGGCGGCGGTCTTGTTCAAACTGGGGGAAGGGGATTTGATG GAGCTTTGGTATAACAGAATGTCATGAGTAAATGTATCACCTGCAGGTAT GTGCGTTTGGAGTGAAATTGTTTTCATTTTATGGAACGAGGTAGGGAGAA GATTTTGGCCAGCCAAATTGATAGGTTAGACGGATATCTGTTTATGTACG TATAGACAGTAGTGTGTATATGCTTGTAAATTTATAATTTTGGCATTTGT TACCGAGGTTAAGAACTCAACGCATTTCGTGGGAACTGAGATGGAATGGG CCAAGAGCCAAAAAGACGCTGATA back to topprotein sequence of NO02G02510.1 >NO02G02510.1-protein ID=NO02G02510.1-protein|Name=NO02G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp MSEDARRNGRSTSMAQREKAIRDLIVQNPVPLEKLRALALAPGDGFCNNA LRSVIWPKLLGLNRFESQPSFHDQVARNQWSDQIGRDVARSLWHYHMPHA KKRKRGSRRRLLAKMINALMSKHPTLHYYQGFHDVLSVLVLVMTEDDDLC FAVAERVALYYLGDYTRRPDFSVLTPLLELLLPLVEAADGDVGACLRACG IHAYVCLPWVIAWWAHDCHNLEITARLFDAFLSGPPLFPLYLAAAMILEA KTELFALEDKDFSAVHSFLSRLASRPDLPVETLIARAHRLLLSLPPAKLV RLHGHPFLRDLARKKEVHALNFPHVEWYKKEAPPDWLLREDRRREEGRSV RCKHTRQRRRQAYLAGVQMPSAAGVVGNEKKGALWSSASSPPSSTSLWVA AAAVVGVAAVLFKLGEGDLMELWYNRMS* back to topmRNA from alignment at chr2:692310..694317- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02510.1 ID=NO02G02510.1|Name=NO02G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2008bp|location=Sequence derived from alignment at chr2:692310..694317- (Nannochloropsis oceanica) TGCAAGTCTGAGGTGCAACAGTCAAGTGGTCCGCCGCACTAACACAGCAC
ACACACAAGATACAGGTGTGCACTGATAGGAAAGGAGCAGCAACAATACG
AACGTCTCGTTGTCTACCTGCCCTGGAGCTGGAGTCTCGCTAGTGGCCAC
TCGTTGACTTAGCCAGCCGAGAGCCTCCCTCCCTCCCTCCCTCCCACCCC
GCTATCCGCCCACAATCCCTAGGGGCTGCCCTGGCACTCAATGTCTGAGG
ATGCCAGAAGAAACGGCCGCAGTACCTCCATGGCACAAAGAGAGAAGGCC
ATTCGAGATCTCATCGTCCAAAATCCTGTGCCTTTGGAGAAGCTTAGGGC
CTTGGTAAGTCGCCATCGAAATCGATTTCCACAAGCCCATTGGCAGATTC
CCAAAACCCTTATCTTCGCTTGCCCTACCCGCGATCCCGATGCATACATG
TTGCCCTGAAGCTCTCCTCAACGTGCTGGGGTCCTACAATTATTGAAACC
CCTCCCACCAAGACCCATTTCGCTTGCCCACAACGCACGCACACGTCCTC
CTAATTGAACCCTTTCCGCATCTCTGCCCCCTTCGTAGGCCCTGGCCCCC
GGTGATGGATTCTGTAACAATGCGCTTCGATCCGTGATATGGCCAAAGCT
ATTGGGCCTCAACCGCTTCGAATCTCAGCCCTCCTTCCATGACCAAGTGG
CGCGCAATCAATGGAGTGACCAAATCGGGCGTGACGTCGCTCGCTCGCTC
TGGCACTACCACATGCCGCATGCCAAGAAGCGGAAGCGAGGGAGTCGAAG
AAGGCTGCTAGCGAAGATGATCAACGCCTTGATGAGCAAGCATCCGACTC
TTCACTACTATCAAGGTTTTCACGACGTCCTCTCTGTCCTCGTCCTCGTC
ATGACTGAAGACGATGATCTTTGCTTCGCAGTTGCTGAGCGGGTAGCCCT
CTACTATCTAGGTGATTATACCCGCCGACCAGACTTCTCTGTGCTCACCC
CTCTATTAGAACTGCTTCTCCCCCTCGTCGAAGCTGCTGATGGCGACGTC
GGTGCTTGCCTCCGGGCGTGTGGCATCCACGCATACGTGTGCTTGCCATG
GGTCATTGCTTGGTGGGCGCATGATTGTCATAATCTCGAAATAACAGCTC
GATTGTTCGATGCCTTTCTGTCAGGCCCTCCCTTATTTCCTCTCTACCTT
GCCGCCGCCATGATCCTGGAAGCCAAAACCGAGCTTTTTGCTTTGGAGGA
CAAGGACTTCTCCGCAGTCCACTCCTTCCTCTCCCGCCTTGCCTCCCGTC
CCGACTTACCGGTGGAAACCCTCATCGCCCGTGCACATCGCTTGCTTCTC
TCCCTTCCTCCTGCCAAACTCGTTCGACTGCATGGTCACCCTTTCTTGAG
AGACCTGGCGAGGAAGAAAGAAGTGCACGCTTTGAATTTTCCTCATGTGG
AATGGTATAAAAAAGAAGCTCCCCCTGATTGGTTGCTGCGCGAAGATCGA
CGACGGGAGGAAGGACGGAGTGTCCGGTGCAAACACACGAGACAGCGACG
CCGACAGGCTTACCTAGCGGGAGTCCAGATGCCATCAGCGGCGGGTGTTG
TGGGTAACGAGAAAAAAGGGGCGTTGTGGTCGTCGGCTTCGTCGCCGCCT
TCCTCCACCTCACTCTGGGTGGCTGCGGCGGCCGTGGTGGGGGTGGCGGC
GGTCTTGTTCAAACTGGGGGAAGGGGATTTGATGGAGCTTTGGTATAACA
GAATGTCATGAGTAAATGTATCACCTGCAGGTATGTGCGTTTGGAGTGAA
ATTGTTTTCATTTTATGGAACGAGGTAGGGAGAAGATTTTGGCCAGCCAA
ATTGATAGGTTAGACGGATATCTGTTTATGTACGTATAGACAGTAGTGTG
TATATGCTTGTAAATTTATAATTTTGGCATTTGTTACCGAGGTTAAGAAC
TCAACGCATTTCGTGGGAACTGAGATGGAATGGGCCAAGAGCCAAAAAGA
CGCTGATA back to topCoding sequence (CDS) from alignment at chr2:692310..694317- >NO02G02510.1 ID=NO02G02510.1|Name=NO02G02510.1|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at chr2:692310..694317- (Nannochloropsis oceanica) ATGTCTGAGGATGCCAGAAGAAACGGCCGCAGTACCTCCATGGCACAAAG AGAGAAGGCCATTCGAGATCTCATCGTCCAAAATCCTGTGCCTTTGGAGA AGCTTAGGGCCTTGGCCCTGGCCCCCGGTGATGGATTCTGTAACAATGCG CTTCGATCCGTGATATGGCCAAAGCTATTGGGCCTCAACCGCTTCGAATC TCAGCCCTCCTTCCATGACCAAGTGGCGCGCAATCAATGGAGTGACCAAA TCGGGCGTGACGTCGCTCGCTCGCTCTGGCACTACCACATGCCGCATGCC AAGAAGCGGAAGCGAGGGAGTCGAAGAAGGCTGCTAGCGAAGATGATCAA CGCCTTGATGAGCAAGCATCCGACTCTTCACTACTATCAAGGTTTTCACG ACGTCCTCTCTGTCCTCGTCCTCGTCATGACTGAAGACGATGATCTTTGC TTCGCAGTTGCTGAGCGGGTAGCCCTCTACTATCTAGGTGATTATACCCG CCGACCAGACTTCTCTGTGCTCACCCCTCTATTAGAACTGCTTCTCCCCC TCGTCGAAGCTGCTGATGGCGACGTCGGTGCTTGCCTCCGGGCGTGTGGC ATCCACGCATACGTGTGCTTGCCATGGGTCATTGCTTGGTGGGCGCATGA TTGTCATAATCTCGAAATAACAGCTCGATTGTTCGATGCCTTTCTGTCAG GCCCTCCCTTATTTCCTCTCTACCTTGCCGCCGCCATGATCCTGGAAGCC AAAACCGAGCTTTTTGCTTTGGAGGACAAGGACTTCTCCGCAGTCCACTC CTTCCTCTCCCGCCTTGCCTCCCGTCCCGACTTACCGGTGGAAACCCTCA TCGCCCGTGCACATCGCTTGCTTCTCTCCCTTCCTCCTGCCAAACTCGTT CGACTGCATGGTCACCCTTTCTTGAGAGACCTGGCGAGGAAGAAAGAAGT GCACGCTTTGAATTTTCCTCATGTGGAATGGTATAAAAAAGAAGCTCCCC CTGATTGGTTGCTGCGCGAAGATCGACGACGGGAGGAAGGACGGAGTGTC CGGTGCAAACACACGAGACAGCGACGCCGACAGGCTTACCTAGCGGGAGT CCAGATGCCATCAGCGGCGGGTGTTGTGGGTAACGAGAAAAAAGGGGCGT TGTGGTCGTCGGCTTCGTCGCCGCCTTCCTCCACCTCACTCTGGGTGGCT GCGGCGGCCGTGGTGGGGGTGGCGGCGGTCTTGTTCAAACTGGGGGAAGG GGATTTGATGGAGCTTTGGTATAACAGAATGTCATGA back to top
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