NO02G02510.1, NO02G02510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02510.1
Unique NameNO02G02510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1774
Alignment locationchr2:692310..694317 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:692310..694317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G02510.1 vs.
Match: EWM30367.1 (tbc1 domain member 20 [Nannochloropsis gaditana])

HSP 1 Score: 544.3 bits (1401), Expect = 3.400e-151
Identity = 277/421 (65.80%), Postives = 328/421 (77.91%), Query Frame = 0
Query:    1 MSED-ARRNGRSTSMAQREKAIRDLIVQNPVPLEKLRALALAPGDGFCNNALRSVIWPKLLGLNRFESQPSFHDQVARNQWSDQIGRDVARSLWHYHMPHAKKRKRGSRRRLLAKMINALMSKHPTLHYYQGFHDVLSVLVLVMTEDDDLCFAVAERVALYYLGDYTRRPDFSVLTPLLELLLPLVEAADGDVGACLRACGIHAYVCLPWVIAWWAHDCHNLEITARLFDAFLSGPPLFPLYLAAAMILEAKTELFALEDKDFSAVHSFLSRLASRPDLPVETLIARAHRLLLSLPPAKLVRLHGHPFLRDLARKKEVHALNFPHVEWYKKEAPPDWLLREDRRREEGRSVRCKHTRQRRRQAYLAGVQMPSAAGVVGNEKKGA----LWSSASSPPSSTSLWVAAAAVVGVAAVLFKLGE 417
            MSE+ A        +AQ+ K I+ LIVQNPVPL++LR+LAL+   GF +N LR VIWPKLLG NRFE +P F + VARNQWSDQI RDVARSLWHY +P AKKRKRG RRRLLA M+NALM+K  TLHYYQG HDV SV VLV+TED DLCFAVAERVAL+++GD+TRR DFSVL PLL+LL+PL+EA D DVG+CLRACG+HAYVCLPWVIAWWAHDCH+L + ARLFDAFLS PPLFP+Y+AAA+ILE K++LFALE +DFSAVH FLSRL S+PDLPVE ++ARAH +L + PPAKLV+  G PFLR+LAR +EVH LNFP   WY++EA PDW+L E+RRR + R VR KHTR+RRRQA+LAGV MP+       E   A     W+  S   S  S  VA AA+VG  AV+ KL E
Sbjct:    1 MSENGAGAKSSKCDIAQKIKVIQALIVQNPVPLDELRSLALSSDGGFISNDLRQVIWPKLLGFNRFELRPPFQNYVARNQWSDQISRDVARSLWHYRLPQAKKRKRGGRRRLLADMVNALMAKDSTLHYYQGLHDVFSVFVLVLTEDPDLCFAVAERVALFFMGDFTRRSDFSVLIPLLDLLIPLIEAFDADVGSCLRACGLHAYVCLPWVIAWWAHDCHDLAMIARLFDAFLSAPPLFPIYVAAALILEGKSDLFALESRDFSAVHRFLSRLPSQPDLPVEAILARAHGMLQAFPPAKLVQSQGSPFLRELARSREVHGLNFP-PPWYQREALPDWILLENRRRRDKRVVRSKHTRERRRQAHLAGVSMPAPPAKSPPEGPRAFGDRFWTYVSPSASFASTLVACAALVGCMAVILKLSE 420          
The following BLAST results are available for this feature:
BLAST of NO02G02510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30367.13.400e-15165.80tbc1 domain member 20 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02510NO02G02510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02510.1NO02G02510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02510.1.cds1NO02G02510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02510.1.cds2NO02G02510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02510.1 ID=NO02G02510.1|Name=NO02G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1774bp
TGCAAGTCTGAGGTGCAACAGTCAAGTGGTCCGCCGCACTAACACAGCAC
ACACACAAGATACAGGTGTGCACTGATAGGAAAGGAGCAGCAACAATACG
AACGTCTCGTTGTCTACCTGCCCTGGAGCTGGAGTCTCGCTAGTGGCCAC
TCGTTGACTTAGCCAGCCGAGAGCCTCCCTCCCTCCCTCCCTCCCACCCC
GCTATCCGCCCACAATCCCTAGGGGCTGCCCTGGCACTCAATGTCTGAGG
ATGCCAGAAGAAACGGCCGCAGTACCTCCATGGCACAAAGAGAGAAGGCC
ATTCGAGATCTCATCGTCCAAAATCCTGTGCCTTTGGAGAAGCTTAGGGC
CTTGGCCCTGGCCCCCGGTGATGGATTCTGTAACAATGCGCTTCGATCCG
TGATATGGCCAAAGCTATTGGGCCTCAACCGCTTCGAATCTCAGCCCTCC
TTCCATGACCAAGTGGCGCGCAATCAATGGAGTGACCAAATCGGGCGTGA
CGTCGCTCGCTCGCTCTGGCACTACCACATGCCGCATGCCAAGAAGCGGA
AGCGAGGGAGTCGAAGAAGGCTGCTAGCGAAGATGATCAACGCCTTGATG
AGCAAGCATCCGACTCTTCACTACTATCAAGGTTTTCACGACGTCCTCTC
TGTCCTCGTCCTCGTCATGACTGAAGACGATGATCTTTGCTTCGCAGTTG
CTGAGCGGGTAGCCCTCTACTATCTAGGTGATTATACCCGCCGACCAGAC
TTCTCTGTGCTCACCCCTCTATTAGAACTGCTTCTCCCCCTCGTCGAAGC
TGCTGATGGCGACGTCGGTGCTTGCCTCCGGGCGTGTGGCATCCACGCAT
ACGTGTGCTTGCCATGGGTCATTGCTTGGTGGGCGCATGATTGTCATAAT
CTCGAAATAACAGCTCGATTGTTCGATGCCTTTCTGTCAGGCCCTCCCTT
ATTTCCTCTCTACCTTGCCGCCGCCATGATCCTGGAAGCCAAAACCGAGC
TTTTTGCTTTGGAGGACAAGGACTTCTCCGCAGTCCACTCCTTCCTCTCC
CGCCTTGCCTCCCGTCCCGACTTACCGGTGGAAACCCTCATCGCCCGTGC
ACATCGCTTGCTTCTCTCCCTTCCTCCTGCCAAACTCGTTCGACTGCATG
GTCACCCTTTCTTGAGAGACCTGGCGAGGAAGAAAGAAGTGCACGCTTTG
AATTTTCCTCATGTGGAATGGTATAAAAAAGAAGCTCCCCCTGATTGGTT
GCTGCGCGAAGATCGACGACGGGAGGAAGGACGGAGTGTCCGGTGCAAAC
ACACGAGACAGCGACGCCGACAGGCTTACCTAGCGGGAGTCCAGATGCCA
TCAGCGGCGGGTGTTGTGGGTAACGAGAAAAAAGGGGCGTTGTGGTCGTC
GGCTTCGTCGCCGCCTTCCTCCACCTCACTCTGGGTGGCTGCGGCGGCCG
TGGTGGGGGTGGCGGCGGTCTTGTTCAAACTGGGGGAAGGGGATTTGATG
GAGCTTTGGTATAACAGAATGTCATGAGTAAATGTATCACCTGCAGGTAT
GTGCGTTTGGAGTGAAATTGTTTTCATTTTATGGAACGAGGTAGGGAGAA
GATTTTGGCCAGCCAAATTGATAGGTTAGACGGATATCTGTTTATGTACG
TATAGACAGTAGTGTGTATATGCTTGTAAATTTATAATTTTGGCATTTGT
TACCGAGGTTAAGAACTCAACGCATTTCGTGGGAACTGAGATGGAATGGG
CCAAGAGCCAAAAAGACGCTGATA
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protein sequence of NO02G02510.1

>NO02G02510.1-protein ID=NO02G02510.1-protein|Name=NO02G02510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MSEDARRNGRSTSMAQREKAIRDLIVQNPVPLEKLRALALAPGDGFCNNA
LRSVIWPKLLGLNRFESQPSFHDQVARNQWSDQIGRDVARSLWHYHMPHA
KKRKRGSRRRLLAKMINALMSKHPTLHYYQGFHDVLSVLVLVMTEDDDLC
FAVAERVALYYLGDYTRRPDFSVLTPLLELLLPLVEAADGDVGACLRACG
IHAYVCLPWVIAWWAHDCHNLEITARLFDAFLSGPPLFPLYLAAAMILEA
KTELFALEDKDFSAVHSFLSRLASRPDLPVETLIARAHRLLLSLPPAKLV
RLHGHPFLRDLARKKEVHALNFPHVEWYKKEAPPDWLLREDRRREEGRSV
RCKHTRQRRRQAYLAGVQMPSAAGVVGNEKKGALWSSASSPPSSTSLWVA
AAAVVGVAAVLFKLGEGDLMELWYNRMS*
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mRNA from alignment at chr2:692310..694317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02510.1 ID=NO02G02510.1|Name=NO02G02510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2008bp|location=Sequence derived from alignment at chr2:692310..694317- (Nannochloropsis oceanica)
TGCAAGTCTGAGGTGCAACAGTCAAGTGGTCCGCCGCACTAACACAGCAC ACACACAAGATACAGGTGTGCACTGATAGGAAAGGAGCAGCAACAATACG AACGTCTCGTTGTCTACCTGCCCTGGAGCTGGAGTCTCGCTAGTGGCCAC TCGTTGACTTAGCCAGCCGAGAGCCTCCCTCCCTCCCTCCCTCCCACCCC GCTATCCGCCCACAATCCCTAGGGGCTGCCCTGGCACTCAATGTCTGAGG ATGCCAGAAGAAACGGCCGCAGTACCTCCATGGCACAAAGAGAGAAGGCC ATTCGAGATCTCATCGTCCAAAATCCTGTGCCTTTGGAGAAGCTTAGGGC CTTGGTAAGTCGCCATCGAAATCGATTTCCACAAGCCCATTGGCAGATTC CCAAAACCCTTATCTTCGCTTGCCCTACCCGCGATCCCGATGCATACATG TTGCCCTGAAGCTCTCCTCAACGTGCTGGGGTCCTACAATTATTGAAACC CCTCCCACCAAGACCCATTTCGCTTGCCCACAACGCACGCACACGTCCTC CTAATTGAACCCTTTCCGCATCTCTGCCCCCTTCGTAGGCCCTGGCCCCC GGTGATGGATTCTGTAACAATGCGCTTCGATCCGTGATATGGCCAAAGCT ATTGGGCCTCAACCGCTTCGAATCTCAGCCCTCCTTCCATGACCAAGTGG CGCGCAATCAATGGAGTGACCAAATCGGGCGTGACGTCGCTCGCTCGCTC TGGCACTACCACATGCCGCATGCCAAGAAGCGGAAGCGAGGGAGTCGAAG AAGGCTGCTAGCGAAGATGATCAACGCCTTGATGAGCAAGCATCCGACTC TTCACTACTATCAAGGTTTTCACGACGTCCTCTCTGTCCTCGTCCTCGTC ATGACTGAAGACGATGATCTTTGCTTCGCAGTTGCTGAGCGGGTAGCCCT CTACTATCTAGGTGATTATACCCGCCGACCAGACTTCTCTGTGCTCACCC CTCTATTAGAACTGCTTCTCCCCCTCGTCGAAGCTGCTGATGGCGACGTC GGTGCTTGCCTCCGGGCGTGTGGCATCCACGCATACGTGTGCTTGCCATG GGTCATTGCTTGGTGGGCGCATGATTGTCATAATCTCGAAATAACAGCTC GATTGTTCGATGCCTTTCTGTCAGGCCCTCCCTTATTTCCTCTCTACCTT GCCGCCGCCATGATCCTGGAAGCCAAAACCGAGCTTTTTGCTTTGGAGGA CAAGGACTTCTCCGCAGTCCACTCCTTCCTCTCCCGCCTTGCCTCCCGTC CCGACTTACCGGTGGAAACCCTCATCGCCCGTGCACATCGCTTGCTTCTC TCCCTTCCTCCTGCCAAACTCGTTCGACTGCATGGTCACCCTTTCTTGAG AGACCTGGCGAGGAAGAAAGAAGTGCACGCTTTGAATTTTCCTCATGTGG AATGGTATAAAAAAGAAGCTCCCCCTGATTGGTTGCTGCGCGAAGATCGA CGACGGGAGGAAGGACGGAGTGTCCGGTGCAAACACACGAGACAGCGACG CCGACAGGCTTACCTAGCGGGAGTCCAGATGCCATCAGCGGCGGGTGTTG TGGGTAACGAGAAAAAAGGGGCGTTGTGGTCGTCGGCTTCGTCGCCGCCT TCCTCCACCTCACTCTGGGTGGCTGCGGCGGCCGTGGTGGGGGTGGCGGC GGTCTTGTTCAAACTGGGGGAAGGGGATTTGATGGAGCTTTGGTATAACA GAATGTCATGAGTAAATGTATCACCTGCAGGTATGTGCGTTTGGAGTGAA ATTGTTTTCATTTTATGGAACGAGGTAGGGAGAAGATTTTGGCCAGCCAA ATTGATAGGTTAGACGGATATCTGTTTATGTACGTATAGACAGTAGTGTG TATATGCTTGTAAATTTATAATTTTGGCATTTGTTACCGAGGTTAAGAAC TCAACGCATTTCGTGGGAACTGAGATGGAATGGGCCAAGAGCCAAAAAGA CGCTGATA
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Coding sequence (CDS) from alignment at chr2:692310..694317-

>NO02G02510.1 ID=NO02G02510.1|Name=NO02G02510.1|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at chr2:692310..694317- (Nannochloropsis oceanica)
ATGTCTGAGGATGCCAGAAGAAACGGCCGCAGTACCTCCATGGCACAAAG
AGAGAAGGCCATTCGAGATCTCATCGTCCAAAATCCTGTGCCTTTGGAGA
AGCTTAGGGCCTTGGCCCTGGCCCCCGGTGATGGATTCTGTAACAATGCG
CTTCGATCCGTGATATGGCCAAAGCTATTGGGCCTCAACCGCTTCGAATC
TCAGCCCTCCTTCCATGACCAAGTGGCGCGCAATCAATGGAGTGACCAAA
TCGGGCGTGACGTCGCTCGCTCGCTCTGGCACTACCACATGCCGCATGCC
AAGAAGCGGAAGCGAGGGAGTCGAAGAAGGCTGCTAGCGAAGATGATCAA
CGCCTTGATGAGCAAGCATCCGACTCTTCACTACTATCAAGGTTTTCACG
ACGTCCTCTCTGTCCTCGTCCTCGTCATGACTGAAGACGATGATCTTTGC
TTCGCAGTTGCTGAGCGGGTAGCCCTCTACTATCTAGGTGATTATACCCG
CCGACCAGACTTCTCTGTGCTCACCCCTCTATTAGAACTGCTTCTCCCCC
TCGTCGAAGCTGCTGATGGCGACGTCGGTGCTTGCCTCCGGGCGTGTGGC
ATCCACGCATACGTGTGCTTGCCATGGGTCATTGCTTGGTGGGCGCATGA
TTGTCATAATCTCGAAATAACAGCTCGATTGTTCGATGCCTTTCTGTCAG
GCCCTCCCTTATTTCCTCTCTACCTTGCCGCCGCCATGATCCTGGAAGCC
AAAACCGAGCTTTTTGCTTTGGAGGACAAGGACTTCTCCGCAGTCCACTC
CTTCCTCTCCCGCCTTGCCTCCCGTCCCGACTTACCGGTGGAAACCCTCA
TCGCCCGTGCACATCGCTTGCTTCTCTCCCTTCCTCCTGCCAAACTCGTT
CGACTGCATGGTCACCCTTTCTTGAGAGACCTGGCGAGGAAGAAAGAAGT
GCACGCTTTGAATTTTCCTCATGTGGAATGGTATAAAAAAGAAGCTCCCC
CTGATTGGTTGCTGCGCGAAGATCGACGACGGGAGGAAGGACGGAGTGTC
CGGTGCAAACACACGAGACAGCGACGCCGACAGGCTTACCTAGCGGGAGT
CCAGATGCCATCAGCGGCGGGTGTTGTGGGTAACGAGAAAAAAGGGGCGT
TGTGGTCGTCGGCTTCGTCGCCGCCTTCCTCCACCTCACTCTGGGTGGCT
GCGGCGGCCGTGGTGGGGGTGGCGGCGGTCTTGTTCAAACTGGGGGAAGG
GGATTTGATGGAGCTTTGGTATAACAGAATGTCATGA
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Synonyms
Publications