NO02G02460.2, NO02G02460.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02460.2
Unique NameNO02G02460.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1814
Alignment locationchr2:679891..681883 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:679891..681883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02460.2 vs.
Match: EWM30409.1 (pyrroline-5-carboxylate reductase [Nannochloropsis gaditana])

HSP 1 Score: 346.7 bits (888), Expect = 6.300e-92
Identity = 182/255 (71.37%), Postives = 214/255 (83.92%), Query Frame = 0 
Query:    1 MLSTRLLAITTAAVRRSALLQRHNPSTLITPLAGSTVPIRYMHRSQPAANHGDSLTDPDADAEGFDFHRIGLVGGGKMSEAIIEGFLKEQLIKPERISVFDVNRARLEFLKKEFGVGTSSSVAATCKNADLVIIAVKPQNLSDKLWAQLKEHLSPQSVLLSIVAGMTMSNFSENTGNTRIVRTMPNTPATIQQGMTVWACSDDVSLSQRNSVAKFLSSLGEQHFVQNELYLDMATAVSGSGPGYVMLILEALVDA 256
            ML TRL  I   A RR+ L+QRH PS   T    +TV  R++HRSQ A +H DS  DP A+AEGFDF+RIGLVGGGKMSEAIIEGF+ E+LI+PE+ISV+DV+R RL++L K FGV  SSS+AA CK++DLVIIAVKPQNL+ KLW QL+ +L P+SV+LSIVAG+ MSNF E+TGN R+VRTMPNTPATIQQGMTVWAC+D VS+SQRNSVAKFLSSLGEQHFV +E YLDMATAVSGSGPGYV+LILEAL+DA
Sbjct:    1 MLPTRLAGI---AARRAFLMQRHIPSNANTTAMSATV--RWIHRSQAALSHDDSKPDPVANAEGFDFNRIGLVGGGKMSEAIIEGFVTEKLIQPEKISVYDVSRKRLDYLMKTFGVQASSSLAAACKDSDLVIIAVKPQNLTQKLWTQLRANLDPKSVVLSIVAGIPMSNFVESTGNKRVVRTMPNTPATIQQGMTVWACTDHVSVSQRNSVAKFLSSLGEQHFVHDEQYLDMATAVSGSGPGYVLLILEALIDA 250
The following BLAST results are available for this feature:
BLAST of NO02G02460.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30409.16.300e-9271.37pyrroline-5-carboxylate reductase [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02460NO02G02460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02460.2NO02G02460.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02460.2.cds1NO02G02460.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02460.2.cds2NO02G02460.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02460.2 ID=NO02G02460.2|Name=NO02G02460.2|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp
AGCCCAAGTAGTACAGGTCCAGGTTCTTCTGCTGTCCTTTTGACAGCCTG
CCTCGCTTCCTTCCATTCGCTGCCCCCTTCAACACACGTCCACACATATA
CTTCCCAGCCATGCTGTCGACCCGCCTCCTGGCCATCACGACGGCTGCTG
TCCGCCGCTCTGCTTTGTTGCAGAGACACAATCCAAGCACTCTGATCACG
CCGCTGGCGGGTTCGACGGTGCCCATTCGATACATGCATCGAAGCCAGCC
CGCTGCAAATCACGGCGACTCCCTTACTGATCCCGATGCGGACGCAGAGG
GCTTTGACTTTCATCGAATTGGCCTGGTTGGGGGGGGCAAAATGAGCGAA
GCCATTATCGAAGGCTTTCTGAAGGAGCAACTGATTAAACCCGAAAGGAT
TTCTGTCTTCGACGTAAATCGCGCAAGGCTTGAATTCCTGAAGAAGGAAT
TTGGAGTGGGAACCTCGTCCTCAGTCGCCGCTACGTGTAAGAATGCGGAT
TTGGTCATCATTGCTGTCAAGCCCCAGAATTTATCTGACAAGCTGTGGGC
ACAACTGAAGGAGCACTTGTCTCCGCAGTCAGTATTATTGAGTATCGTGG
CCGGCATGACCATGTCGAACTTTAGCGAGAACACCGGCAACACACGCATA
GTCCGTACGATGCCCAATACCCCCGCCACCATCCAACAAGGAATGACTGT
CTGGGCGTGCAGCGACGACGTTAGCCTCTCCCAACGGAACTCGGTCGCCA
AGTTTCTGTCGAGTTTGGGGGAGCAGCACTTTGTCCAAAATGAGCTTTAT
CTAGACATGGCCACGGCGGTCAGTGGGTCAGGGCCGGGGTATGTGATGCT
TATCCTCGAGGCACTCGTTGACGCGGGTACGTGACTGCCGTTTCAAGGGG
TTGGAAGAGGGGGAAATGTCGTGGCCCGGTGGATATTGAGTCCGTCGCAG
ATGTGTTGGACGACAAAGCTGACAAATATCCACCAAGCCACGATAACAAC
ATCCCATCCATAATCAAATAGACCAGCTGAACACATAGGCCGCACACTTA
TTGGCACCATTAAGGCATGGAGGTCGGGCATGAAGGGGAAATAACTCACT
TGCCCCCGTCCCACGTCTTTAAAATGCGAATAAGTGTGCGGTTCATGCGT
TCAACTGGTCCATTTGATTTTGGATGGGCTACGCGATTCTTCTGCTTTTT
CATGCAGGCGTGTATACCACTTATCACCATCAACTAATGTCCCTTCCTGC
CTGTTCACAACAGCGGTACATCTCGGCTTCTCCCGCGACATCGCCTCCAA
GCTCGTCCTTCAGACGGTCTACGGGACCACGGCCCTCGCTATGAAAAGCG
GGCTCCACCCGGCCATACTTCGCAACAGCGTCACGAGTCCAGGAGGGACG
ACAGCTTCGGCATTGTACGTATTAGAGCAAGGGCGGTTCCGTACTGTGCT
GGCTGACGCGTTGTGGAGTGCCTATCGACGGAGTTTGGAGCTGGGTCATA
TGGACAGTAACGTCGGTCCGGGTAGAGCAAAGCACGAGCCGCACGAGATG
GATGGGCATAAGAAGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGGAAGAA
ATGAGGGTGGAGGAGATCTCAAATAACTGAAAGTCGTGAAATTGAACCAA
GAAAATCGAAGCAAGAGGATCAAACGCACAGCCTCAGTAAGGTATCACAA
ATTAGAACAGATGGAGAAAATAGGCCACGCTGCGTACGCACGTACCAATC
AAAACAGTAAAAAGGTGGTTTGAGGTGTGAAAGGAATGACATTTGCGAGG
AGTGATGAGATAAC
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protein sequence of NO02G02460.2

>NO02G02460.2-protein ID=NO02G02460.2-protein|Name=NO02G02460.2|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MLSTRLLAITTAAVRRSALLQRHNPSTLITPLAGSTVPIRYMHRSQPAAN
HGDSLTDPDADAEGFDFHRIGLVGGGKMSEAIIEGFLKEQLIKPERISVF
DVNRARLEFLKKEFGVGTSSSVAATCKNADLVIIAVKPQNLSDKLWAQLK
EHLSPQSVLLSIVAGMTMSNFSENTGNTRIVRTMPNTPATIQQGMTVWAC
SDDVSLSQRNSVAKFLSSLGEQHFVQNELYLDMATAVSGSGPGYVMLILE
ALVDAGT*
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mRNA from alignment at chr2:679891..681883+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02460.2 ID=NO02G02460.2|Name=NO02G02460.2|organism=Nannochloropsis oceanica|type=mRNA|length=1993bp|location=Sequence derived from alignment at chr2:679891..681883+ (Nannochloropsis oceanica)
AGCCCAAGTAGTACAGGTCCAGGTTCTTCTGCTGTCCTTTTGACAGCCTG
CCTCGCTTCCTTCCATTCGCTGCCCCCTTCAACACACGTCCACACATATA
CTTCCCAGCCATGCTGTCGACCCGCCTCCTGGCCATCACGACGGCTGCTG
TCCGCCGCTCTGCTTTGTTGCAGAGACACAATCCAAGCACTCTGATCACG
CCGCTGGCGGGTTCGACGGTGCCCATTCGATACATGCATCGAAGCCAGCC
CGCTGCAAATCACGGCGACTCCCTTACTGATCCCGATGCGGACGCAGAGG
GCTTTGACTTTCATCGAATTGGCCTGGTTGGGGGGGGCAAAATGAGCGAA
GCCATTATCGAAGGCTTTCTGAAGGAGCAACTGATTAAACCCGAAAGGAT
TTCTGTCTTCGACGTAAATCGCGCAAGGCTTGAATTCCTGAAGAAGGAAT
TTGGAGTGGGAACCTCGTCCTCAGTCGCCGCTACGTGTAAGAATGCGGAT
TTGGTCATCATTGCTGTCAAGCCCCAGAATTTATCTGACAAGCTGTGGGC
ACAACTGAAGGAGCACTTGTCTCCGCAGTCAGTATTATTGAGTATCGTGG
CCGGTAAGAATGGGGGCGTGGGGGAACAAAGGGAGTGAATAGGTTGCACC
TGTAGAGACGAAATGAGGCGAAGCTGTAATTCTCCTGAGGAATAGGATCA
AGGGCGATGAGGATGAAGGGGCATTTCAGTTTGCGAGATAAGACGAAGTC
TCAACCCCCCTCCCCTCCCCCCCCTCACTCAGGCATGACCATGTCGAACT
TTAGCGAGAACACCGGCAACACACGCATAGTCCGTACGATGCCCAATACC
CCCGCCACCATCCAACAAGGAATGACTGTCTGGGCGTGCAGCGACGACGT
TAGCCTCTCCCAACGGAACTCGGTCGCCAAGTTTCTGTCGAGTTTGGGGG
AGCAGCACTTTGTCCAAAATGAGCTTTATCTAGACATGGCCACGGCGGTC
AGTGGGTCAGGGCCGGGGTATGTGATGCTTATCCTCGAGGCACTCGTTGA
CGCGGGTACGTGACTGCCGTTTCAAGGGGTTGGAAGAGGGGGAAATGTCG
TGGCCCGGTGGATATTGAGTCCGTCGCAGATGTGTTGGACGACAAAGCTG
ACAAATATCCACCAAGCCACGATAACAACATCCCATCCATAATCAAATAG
ACCAGCTGAACACATAGGCCGCACACTTATTGGCACCATTAAGGCATGGA
GGTCGGGCATGAAGGGGAAATAACTCACTTGCCCCCGTCCCACGTCTTTA
AAATGCGAATAAGTGTGCGGTTCATGCGTTCAACTGGTCCATTTGATTTT
GGATGGGCTACGCGATTCTTCTGCTTTTTCATGCAGGCGTGTATACCACT
TATCACCATCAACTAATGTCCCTTCCTGCCTGTTCACAACAGCGGTACAT
CTCGGCTTCTCCCGCGACATCGCCTCCAAGCTCGTCCTTCAGACGGTCTA
CGGGACCACGGCCCTCGCTATGAAAAGCGGGCTCCACCCGGCCATACTTC
GCAACAGCGTCACGAGTCCAGGAGGGACGACAGCTTCGGCATTGTACGTA
TTAGAGCAAGGGCGGTTCCGTACTGTGCTGGCTGACGCGTTGTGGAGTGC
CTATCGACGGAGTTTGGAGCTGGGTCATATGGACAGTAACGTCGGTCCGG
GTAGAGCAAAGCACGAGCCGCACGAGATGGATGGGCATAAGAAGTAGGGA
GGGAGGGAGGGAGGGAGGGAGGGGAAGAAATGAGGGTGGAGGAGATCTCA
AATAACTGAAAGTCGTGAAATTGAACCAAGAAAATCGAAGCAAGAGGATC
AAACGCACAGCCTCAGTAAGGTATCACAAATTAGAACAGATGGAGAAAAT
AGGCCACGCTGCGTACGCACGTACCAATCAAAACAGTAAAAAGGTGGTTT
GAGGTGTGAAAGGAATGACATTTGCGAGGAGTGATGAGATAAC
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Coding sequence (CDS) from alignment at chr2:679891..681883+

>NO02G02460.2 ID=NO02G02460.2|Name=NO02G02460.2|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at chr2:679891..681883+ (Nannochloropsis oceanica)
ATGCTGTCGACCCGCCTCCTGGCCATCACGACGGCTGCTGTCCGCCGCTC
TGCTTTGTTGCAGAGACACAATCCAAGCACTCTGATCACGCCGCTGGCGG
GTTCGACGGTGCCCATTCGATACATGCATCGAAGCCAGCCCGCTGCAAAT
CACGGCGACTCCCTTACTGATCCCGATGCGGACGCAGAGGGCTTTGACTT
TCATCGAATTGGCCTGGTTGGGGGGGGCAAAATGAGCGAAGCCATTATCG
AAGGCTTTCTGAAGGAGCAACTGATTAAACCCGAAAGGATTTCTGTCTTC
GACGTAAATCGCGCAAGGCTTGAATTCCTGAAGAAGGAATTTGGAGTGGG
AACCTCGTCCTCAGTCGCCGCTACGTGTAAGAATGCGGATTTGGTCATCA
TTGCTGTCAAGCCCCAGAATTTATCTGACAAGCTGTGGGCACAACTGAAG
GAGCACTTGTCTCCGCAGTCAGTATTATTGAGTATCGTGGCCGGCATGAC
CATGTCGAACTTTAGCGAGAACACCGGCAACACACGCATAGTCCGTACGA
TGCCCAATACCCCCGCCACCATCCAACAAGGAATGACTGTCTGGGCGTGC
AGCGACGACGTTAGCCTCTCCCAACGGAACTCGGTCGCCAAGTTTCTGTC
GAGTTTGGGGGAGCAGCACTTTGTCCAAAATGAGCTTTATCTAGACATGG
CCACGGCGGTCAGTGGGTCAGGGCCGGGGTATGTGATGCTTATCCTCGAG
GCACTCGTTGACGCGGGTACGTGA
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Synonyms
Publications