NO02G02450.1, NO02G02450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02450.1
Unique NameNO02G02450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length798
Alignment locationchr2:678854..679651 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:678854..679651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G02450.1 vs.
Match: EWM30391.1 (iron-sulfur cluster assembly 2 mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 219.2 bits (557), Expect = 1.200e-53
Identity = 106/136 (77.94%), Postives = 126/136 (92.65%), Query Frame = 0 
Query:   75 QSSSNASSG---VSLEDDVVVTNQCIRRIKALQANTGKQDLKLRLSVEGGGCSGFTYSFTMEEGPLQEEDRVFGREGGQLVIDEGSLEFVKGATVDFTEDMMRSAFAVVNNPLSESACGCGSSFAVKNFEKNPAID 208
            Q SSNA S    +SL++DVVVTN CI+RIKALQ  TGK++LKLRLSVEGGGCSGFTY+FTME+GP++++D+V+GREG Q+V+DEGSLEFV+G+TVDFTEDMMRSAFAVV+NPLSESACGCGSSFA+KNFEKNPAID
Sbjct:   58 QLSSNAVSNSPQMSLDEDVVVTNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMEDGPVEDDDKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAMKNFEKNPAID 193
The following BLAST results are available for this feature:
BLAST of NO02G02450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30391.11.200e-5377.94iron-sulfur cluster assembly 2 mitochondrial-like ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02450NO02G02450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02450.1NO02G02450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02450.1.cds1NO02G02450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02450.1 ID=NO02G02450.1|Name=NO02G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=798bp
AACAGGCTCTTCGTAGCGGACGAAAGCTTGAAACGCAAGCACCGGAAGCC
CAGCCTAACTCCTTTCAAAGCCAAAACAAGTACACACGATTAGGGACGAG
GGCGCCTTCAGTTGCTCCTCTACTTCCACAGCAGCCTTCCTAGACCGCAG
CGCCTCAGCATCACCGCAATAAGCATGCTGCCAAGGCGTCTTAGCGCCAT
CGGAGCTTTGCGTTCCAGTTTTAGAGACATGCACGCGGCAGTCACATTCG
CCAATACAAGACCCACCGCAGCAGGAACGCTTGCACAACCTTTATCATTC
CCTTTGTTAGGGTTAGCCGTAGAACCACCACACTTGCCATGGACCCACCA
GCAAGCTCGCCGGCTTCTGAGCAGCAGCAGCAGTGCTGCCAGCAATCAGA
GCAGCAGTAATGCGAGCAGCGGCGTCTCGCTGGAGGACGACGTGGTAGTG
ACGAATCAATGCATCCGGCGCATTAAGGCCTTACAGGCCAACACGGGCAA
GCAAGACCTTAAGCTCCGTCTGTCCGTCGAAGGAGGAGGCTGCTCAGGCT
TCACATACTCCTTCACCATGGAAGAGGGGCCGCTTCAGGAGGAGGACCGG
GTGTTTGGGCGGGAGGGAGGGCAATTGGTAATAGATGAGGGGTCACTGGA
ATTTGTCAAGGGCGCGACGGTGGATTTCACGGAGGATATGATGCGAAGCG
CATTTGCAGTAGTGAATAACCCTCTGTCGGAATCGGCATGTGGATGTGGG
AGTTCGTTTGCAGTCAAAAATTTCGAGAAAAACCCGGCGATCGATTAG
back to top

protein sequence of NO02G02450.1

>NO02G02450.1-protein ID=NO02G02450.1-protein|Name=NO02G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MLPRRLSAIGALRSSFRDMHAAVTFANTRPTAAGTLAQPLSFPLLGLAVE
PPHLPWTHQQARRLLSSSSSAASNQSSSNASSGVSLEDDVVVTNQCIRRI
KALQANTGKQDLKLRLSVEGGGCSGFTYSFTMEEGPLQEEDRVFGREGGQ
LVIDEGSLEFVKGATVDFTEDMMRSAFAVVNNPLSESACGCGSSFAVKNF
EKNPAID*
back to top

mRNA from alignment at chr2:678854..679651-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02450.1 ID=NO02G02450.1|Name=NO02G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=798bp|location=Sequence derived from alignment at chr2:678854..679651- (Nannochloropsis oceanica)
AACAGGCTCTTCGTAGCGGACGAAAGCTTGAAACGCAAGCACCGGAAGCC
CAGCCTAACTCCTTTCAAAGCCAAAACAAGTACACACGATTAGGGACGAG
GGCGCCTTCAGTTGCTCCTCTACTTCCACAGCAGCCTTCCTAGACCGCAG
CGCCTCAGCATCACCGCAATAAGCATGCTGCCAAGGCGTCTTAGCGCCAT
CGGAGCTTTGCGTTCCAGTTTTAGAGACATGCACGCGGCAGTCACATTCG
CCAATACAAGACCCACCGCAGCAGGAACGCTTGCACAACCTTTATCATTC
CCTTTGTTAGGGTTAGCCGTAGAACCACCACACTTGCCATGGACCCACCA
GCAAGCTCGCCGGCTTCTGAGCAGCAGCAGCAGTGCTGCCAGCAATCAGA
GCAGCAGTAATGCGAGCAGCGGCGTCTCGCTGGAGGACGACGTGGTAGTG
ACGAATCAATGCATCCGGCGCATTAAGGCCTTACAGGCCAACACGGGCAA
GCAAGACCTTAAGCTCCGTCTGTCCGTCGAAGGAGGAGGCTGCTCAGGCT
TCACATACTCCTTCACCATGGAAGAGGGGCCGCTTCAGGAGGAGGACCGG
GTGTTTGGGCGGGAGGGAGGGCAATTGGTAATAGATGAGGGGTCACTGGA
ATTTGTCAAGGGCGCGACGGTGGATTTCACGGAGGATATGATGCGAAGCG
CATTTGCAGTAGTGAATAACCCTCTGTCGGAATCGGCATGTGGATGTGGG
AGTTCGTTTGCAGTCAAAAATTTCGAGAAAAACCCGGCGATCGATTAG
back to top

Coding sequence (CDS) from alignment at chr2:678854..679651-

>NO02G02450.1 ID=NO02G02450.1|Name=NO02G02450.1|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at chr2:678854..679651- (Nannochloropsis oceanica)
ATGCTGCCAAGGCGTCTTAGCGCCATCGGAGCTTTGCGTTCCAGTTTTAG
AGACATGCACGCGGCAGTCACATTCGCCAATACAAGACCCACCGCAGCAG
GAACGCTTGCACAACCTTTATCATTCCCTTTGTTAGGGTTAGCCGTAGAA
CCACCACACTTGCCATGGACCCACCAGCAAGCTCGCCGGCTTCTGAGCAG
CAGCAGCAGTGCTGCCAGCAATCAGAGCAGCAGTAATGCGAGCAGCGGCG
TCTCGCTGGAGGACGACGTGGTAGTGACGAATCAATGCATCCGGCGCATT
AAGGCCTTACAGGCCAACACGGGCAAGCAAGACCTTAAGCTCCGTCTGTC
CGTCGAAGGAGGAGGCTGCTCAGGCTTCACATACTCCTTCACCATGGAAG
AGGGGCCGCTTCAGGAGGAGGACCGGGTGTTTGGGCGGGAGGGAGGGCAA
TTGGTAATAGATGAGGGGTCACTGGAATTTGTCAAGGGCGCGACGGTGGA
TTTCACGGAGGATATGATGCGAAGCGCATTTGCAGTAGTGAATAACCCTC
TGTCGGAATCGGCATGTGGATGTGGGAGTTCGTTTGCAGTCAAAAATTTC
GAGAAAAACCCGGCGATCGATTAG
back to top
Synonyms
Publications