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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:661137..664712 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02380.1 vs.
Match: EWM30427.1 (actin-related protein 6 [Nannochloropsis gaditana]) HSP 1 Score: 625.9 bits (1613), Expect = 1.000e-175 Identity = 308/456 (67.54%), Postives = 365/456 (80.04%), Query Frame = 0
Query: 34 PAAAPVASPRKGGHKVHTSSNRVAGGGEGQGNMPTLVLDNGAYHLKVGFAGDPAPRLLMPNCTAKLKGQLQLLVGDDIDLVNNTANLQYTRPFDRGYLTNWEAENQVWKRAFGETNLKVEPEETRLVVTEAPFTPTSLSTFSTQVIFEEFGFAACAKLPAAILSGHHYTSTQPQQEPQPQCALLGGGRINCALVIDSGFSFTHVIPLYKNRAQRAGIRRVNVGGKLLTNFLKETVSYRQWNMMDEFQLMNDAKEALCYVSQDFVAEMAKLRPGGGPNRRLRAHEGIRRNFVLPDFHNTMKGYVQDEQPRLHEQYQEERKEEPEQQVLSMEVERFVVPEVLFRPSDVGLRQGGLPEAVVEAVESCDIGLRASLYSNIILTGGNVLFPGLAQRLKTELRALVPEYYSLAVHTPSDPIGYAWQGGGRFAQEQPQTFVTKAQYNEYGPEACQEHVFDVQW 490
PAA+ + GH+ +T++ + + +G+ TLVLDNGA +K+GFAGDPAPR +PNC AKLKGQLQ L+G+D+D VNNTANLQYTRPFDRGYLT+WEAE+Q+W RAFG KV+P +T LV+TEAPFTP+ L+TFSTQV+FEEFGFAACAK+PAA SG+ Y+ + QQ+ Q G ++ LVIDSGFSFTHV+P+Y+ +AQRAG+RRVNVGGKLLTN LKETVSYRQWNMMDEFQLMNDAKEALC+VSQ+F AEMAK+RPGGGP+R++R E +RRNFVLPDF TM+GYVQD Q + H+Q E EQQVLSMEVERFVVPEVLFRPSDVGLRQGGLPEAVVEAVE+CDIGLR +LY+NI+LTGGNVLFPG AQRL TELR VPEYYS+ V P DPI YAW+G AQ QPQ FV+K+QY+EYG E QE +FD W
Sbjct: 4 PAASGASGTGFSGHQ-NTNNTNIVTRPQNEGDFVTLVLDNGADRMKMGFAGDPAPRFYIPNCMAKLKGQLQWLIGEDMDSVNNTANLQYTRPFDRGYLTDWEAEHQIWGRAFGANKAKVDPAQTHLVLTEAPFTPSPLATFSTQVVFEEFGFAACAKMPAASFSGYRYSLMEKQQQQQLGHQQGEGTGVDAVLVIDSGFSFTHVVPMYRGKAQRAGVRRVNVGGKLLTNLLKETVSYRQWNMMDEFQLMNDAKEALCFVSQNFGAEMAKIRPGGGPSRQVRTQEALRRNFVLPDFQTTMRGYVQDVQVQGHQQ------TEAEQQVLSMEVERFVVPEVLFRPSDVGLRQGGLPEAVVEAVEACDIGLRGALYNNIVLTGGNVLFPGFAQRLHTELRIRVPEYYSVKVQAPPDPIEYAWRGAAHMAQYQPQIFVSKSQYDEYGAEFIQERMFDGLW 452
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02380.1 ID=NO02G02380.1|Name=NO02G02380.1|organism=Nannochloropsis oceanica|type=mRNA|length=3034bp TACCTTTCGACGCTCGACCGGACAGAAACCATTTTCCCAAGCAGTGAGAT GATATACAGGCAAGGGCAAGTCAAGAACGAGAGGGGAAGGATGGGAGACG TCGCCCCATCTCATTGTGAAGCGCACGAGTACAAGGGTGTCCTCCTTCCT TTCTCTCAAAGGTGATGGTCCTGGCGTGCTTGTTGGTGATGCCGCTCTGC CTTCGACCGTACATGCCTCTCTGTCCTTCTTTCTTTTTCTTCCCTTTCTC GTTTTATTTCTGGCTCCCCCCTTCTCTTGCCTTCCCCCCAGCCCTCGCCA GCCACAACACAGACCTCTCCTCTTGCTACACATCACCTCCTCCTCCTCCC TGCACCTTTTCTTTCTCACCCTCTTGGTTTACCGCTGGCTTCCTCCACTC TGTATCAACGCCTGCAACGCCGCCCTCTCTTCGGGCGAGGCCGACTTGGC CAAGGCCTGGTGCATGGCACGGTTATCTTCCAACGTCATCACCCGCCCCG TTTGAATGTCCTGGACCAATAAATACATCCATTGTCCCTTGGGCATGTCT GATGTCACCTCTGCAAATACAAACGCGTGTCCAAATGGCCCTTCAATGTT AAAGCGAATCCGCAGCCTCTTACTCCCATCCTCCCCCACATAATTCTTAT GCTCCACAAAATTTCTGCGTCCCTCCCGCCGTCCCCCCCCATCCCGGCCG TAACCTTTCAATGGCTCCCCGTACCGATTCAACACGTCATGGTTTTGTTT CACTGCGTCGAATGCCTCGTTAAAGAGGTGGTTGGCGCTCGTGCGACTGG GCATGAGCTCGTCCACGATAAAGTACAAGGAACCCGCCGCAATGACGGCC ACGGTTAGGTAAGCTAATCCACGCATGAACCCTATCTTTTCCCCATCCTC CGGCGGGCCCTCGGTTTCCGGTTCTTCTTCTTCTTGCTGTTGCTTCTCTT GGTTTTTCTCTTCCTCTTCCTCCTCCTTTCTTCCCCCCGCATCCTCGTTC TTGGTGCTAAAACCTGCTGCCGCTGGAGACGATGGGTTGCCTCCTCTGCT TTGACCCCGCCAGCCACCGGTCCGCCGCATGCATCCATTCATCTGTGTGC CCAGCAACGGGACCAGCATCGAAGAGGGCTGGTAGCGCTTGGGAAGGAGG AGGTGTGTGGTGGCAGTGGTGGGGAGACCAGTCGAAGCAGATGATACTCC GCCTGTCGAAAGAGGTCTACGAGCCGCTCCCCCTCTTGCCCTGGCCAACA GCGCGCGACGGGTAGATGGTCCTGCGGCCTTCGTCACGACGATTACAAGG CCTGCCATGCTGCTGGTGCTGTGGTGCTGTGGTGGTGGTATCAAGAAGGA TCGAGAAAACTTGGTTAAGAGATGATATTGACTTGAGACTTGCCTTAAAA AGAAGTGGAACTGCGACCTCCTCGCTAGCTTCGTCGTGGCCCGCTTGTTT CTCCTCTCGTTCAGCACAAATTCACACACTCAGGCTCGCACAGTCGCATG CGTATATATGACATTCTCTCCTCTCCAATTTTGTTACGCAGGGGGTCGCG GGATTGAGCACGCGAGGTTGGAAGAGGCAGGAGCCAGGAGGCAAGGGGCG AGAATGCCGGCAGCCGCACCAGTCGCTTCGCCACGTAAAGGAGGGCACAA AGTACACACCAGCAGCAACAGGGTAGCAGGAGGAGGGGAAGGGCAAGGTA ATATGCCTACGCTAGTGCTGGACAACGGGGCGTACCACCTTAAAGTGGGC TTTGCAGGAGACCCTGCGCCCCGCCTTCTCATGCCCAACTGCACGGCCAA GCTCAAGGGCCAGCTTCAGTTGCTGGTAGGCGACGATATTGACCTAGTGA ACAACACGGCTAATCTTCAATACACGCGGCCGTTCGATCGCGGCTATCTG ACCAATTGGGAGGCCGAGAACCAAGTGTGGAAGCGGGCCTTTGGAGAGAC CAACCTTAAAGTAGAACCCGAAGAGACCCGCTTGGTAGTGACCGAGGCGC CCTTTACTCCCACAAGCCTCTCAACCTTCAGTACCCAAGTCATTTTCGAA GAATTCGGATTCGCGGCTTGTGCCAAGCTGCCTGCTGCTATTCTTTCCGG CCATCACTACACCTCAACCCAACCTCAGCAGGAACCCCAGCCGCAATGTG CCTTATTAGGAGGAGGTAGAATTAATTGTGCCTTGGTCATAGACTCAGGC TTCAGCTTTACACACGTTATACCCTTGTATAAAAACAGGGCCCAACGTGC AGGGATCCGCCGCGTGAACGTGGGGGGGAAACTTCTGACCAACTTTTTGA AAGAGACCGTTTCTTACCGACAGTGGAATATGATGGATGAATTTCAACTC ATGAATGATGCGAAGGAGGCTTTGTGTTATGTGAGTCAAGACTTCGTGGC GGAAATGGCTAAGCTCCGACCGGGGGGCGGGCCGAACCGACGCCTGCGTG CTCATGAGGGGATACGACGAAATTTTGTTTTGCCTGATTTTCATAACACC ATGAAGGGGTATGTCCAAGACGAACAGCCGCGGCTGCATGAGCAATATCA GGAAGAGCGAAAGGAAGAACCAGAACAGCAGGTGCTGTCGATGGAGGTGG AACGTTTCGTCGTTCCTGAGGTGTTGTTCCGACCTTCAGATGTGGGTCTC CGTCAGGGCGGCCTTCCTGAAGCGGTGGTCGAGGCTGTGGAATCCTGCGA CATCGGGTTGCGGGCGTCCTTGTACAGCAACATTATTCTAACGGGAGGGA ATGTCTTATTTCCCGGCTTGGCGCAACGTCTGAAGACAGAGCTACGGGCT TTGGTGCCTGAGTACTACTCTCTGGCCGTGCATACTCCGTCTGATCCCAT CGGGTATGCGTGGCAAGGAGGGGGTCGCTTTGCCCAGGAACAACCGCAAA CGTTTGTGACCAAGGCACAGTACAATGAGTATGGTCCAGAGGCCTGCCAG GAGCATGTGTTTGATGTGCAGTGGTAGACTGAAAGGATAAAAGAAGATAT GGAATGGGCCTTGTACACATAACCTCTTTTGCCA back to topprotein sequence of NO02G02380.1 >NO02G02380.1-protein ID=NO02G02380.1-protein|Name=NO02G02380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp MTFSPLQFCYAGGRGIEHARLEEAGARRQGARMPAAAPVASPRKGGHKVH TSSNRVAGGGEGQGNMPTLVLDNGAYHLKVGFAGDPAPRLLMPNCTAKLK GQLQLLVGDDIDLVNNTANLQYTRPFDRGYLTNWEAENQVWKRAFGETNL KVEPEETRLVVTEAPFTPTSLSTFSTQVIFEEFGFAACAKLPAAILSGHH YTSTQPQQEPQPQCALLGGGRINCALVIDSGFSFTHVIPLYKNRAQRAGI RRVNVGGKLLTNFLKETVSYRQWNMMDEFQLMNDAKEALCYVSQDFVAEM AKLRPGGGPNRRLRAHEGIRRNFVLPDFHNTMKGYVQDEQPRLHEQYQEE RKEEPEQQVLSMEVERFVVPEVLFRPSDVGLRQGGLPEAVVEAVESCDIG LRASLYSNIILTGGNVLFPGLAQRLKTELRALVPEYYSLAVHTPSDPIGY AWQGGGRFAQEQPQTFVTKAQYNEYGPEACQEHVFDVQW* back to topmRNA from alignment at chr2:661137..664712+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02380.1 ID=NO02G02380.1|Name=NO02G02380.1|organism=Nannochloropsis oceanica|type=mRNA|length=3576bp|location=Sequence derived from alignment at chr2:661137..664712+ (Nannochloropsis oceanica) TACCTTTCGACGCTCGACCGGACAGAAACCATTTTCCCAAGCAGTGAGAT
GATATACAGGCAAGGGCAAGTCAAGAACGAGAGGGGAAGGATGGGAGACG
TCGCCCCATCTCATTGTGAAGCGCACGAGTACAAGGGTGTCCTCCTTCCT
TTCTCTCAAAGGTGATGGTCCTGGCGTGCTTGTTGGTGATGCCGCTCTGC
CTTCGACCGTACATGCCTCTCTGTCCTTCTTTCTTTTTCTTCCCTTTCTC
GTTTTATTTCTGGCTCCCCCCTTCTCTTGCCTTCCCCCCAGCCCTCGCCA
GCCACAACACAGACCTCTCCTCTTGCTACACATCACCTCCTCCTCCTCCC
TGCACCTTTTCTTTCTCACCCTCTTGGTTTACCGCTGGCTTCCTCCACTC
TGTATCAACGCCTGCAACGCCGCCCTCTCTTCGGGCGAGGCCGACTTGGC
CAAGGCCTGGTGCATGGCACGGTTATCTTCCAACGTCATCACCCGCCCCG
TTTGAATGTCCTGGACCAATAAATACATCCATTGTCCCTTGGGCATGTCT
GATGTCACCTCTGCAAATACAAACGCGTGTCCAAATGGCCCTTCAATGTT
AAAGCGAATCCGCAGCCTCTTACTCCCATCCTCCCCCACATAATTCTTAT
GCTCCACAAAATTTCTGCGTCCCTCCCGCCGTCCCCCCCCATCCCGGCCG
TAACCTTTCAATGGCTCCCCGTACCGATTCAACACGTCATGGTTTTGTTT
CACTGCGTCGAATGCCTCGTTAAAGAGGTGGTTGGCGCTCGTGCGACTGG
GCATGAGCTCGTCCACGATAAAGTACAAGGAACCCGCCGCAATGACGGCC
ACGGTTAGGTAAGCTAATCCACGCATGAACCCTATCTTTTCCCCATCCTC
CGGCGGGCCCTCGGTTTCCGGTTCTTCTTCTTCTTGCTGTTGCTTCTCTT
GGTTTTTCTCTTCCTCTTCCTCCTCCTTTCTTCCCCCCGCATCCTCGTTC
TTGGTGCTAAAACCTGCTGCCGCTGGAGACGATGGGTTGCCTCCTCTGCT
TTGACCCCGCCAGCCACCGGTCCGCCGCATGCATCCATTCATCTGTGTGC
CCAGCAACGGGACCAGCATCGAAGAGGGCTGGTAGCGCTTGGGAAGGAGG
AGGTGTGTGGTGGCAGTGGTGGGGAGACCAGTCGAAGCAGATGATACTCC
GCCTGTCGAAAGAGGTCTACGAGCCGCTCCCCCTCTTGCCCTGGCCAACA
GCGCGCGACGGGTAGATGGTCCTGCGGCCTTCGTCACGACGATTACAAGG
CCTGCCATGCTGCTGGTGCTGTGGTGCTGTGGTGGTGGTATCAAGAAGGA
TCGAGAAAACTTGGTTAAGAGATGATATTGACTTGAGACTTGCCTTAAAA
AGAAGTGGAACTGCGACCTCCTCGCTAGCTTCGTCGTGGCCCGCTTGTTT
CTCCTCTCGTTCAGCACAAATTCACACACTCAGGCTCGCACAGTCGCATG
CGTATATATGACATTCTCTCCTCTCCAATTTTGTTACGCAGGGGGTCGCG
GGATTGAGCACGCGAGGTTGGAAGAGGCAGGAGCCAGGAGGCAAGGGGCG
AGAATGCCGGCAGCCGCACCAGTCGCTTCGCCACGTAAAGGAGGGCACAA
AGTACACACCAGCAGCAACAGGGTAGCAGGAGGAGGGGAAGGGCAAGGTA
ATATGCCTACGCTAGTGCTGGACAACGGGGCGTACCACCTTAAAGTGGGC
TTTGCAGGAGACCCTGCGCCCCGCCTTCTCATGCCCAACTGCACGGCCAA
GCTCAAGGGCCAGCTTCAGGTGAGTGGAATTAGGATAGCTTACTCTTGAA
AAGTCCATGTTACGGCAATCTGAATGCTGCGTGCCCGCTGGCTCCAACCG
AAGAGAGATAAGGCTGGTCATATCAGGCAACCTACCTGCGACGCACCATC
CCCTCACGCAGCCCATTCCCGTCTACCTCTCCTCTCACCTTCTCCGCTCA
GTTGCTGGTAGGCGACGATATTGACCTAGTGAACAACACGGCTAATCTTC
AATACACGCGGCCGTTCGATCGCGGCTATCTGACCAATTGGGAGGCCGAG
AACCAAGTGTGGAAGCGGGCCTTTGGAGAGACCAACCTTAAAGTACGTAT
GTGACTTGATACCCAGGACAGTGGGGGAGGACGCGAGATAAGACGTAAGA
TAAGAGGTGAAGGGTTCATGGAAAGGGGGGCCTTCAATCGAGAAAGAAAT
GTGCCGCTTGTTTTCCATCTTTTGTCAGCTGTTGTCCCGGCTCTTTGTCG
TCGTGGTGCGCTTGCTACGTCTTGACTCCCCTTGCCAAGCGCGGCCGTGC
CTCTTATTTTCACACGGAAGTAGAATTTTTTTCTCCCATGTTTTCTTCCT
CCTTCCTATACCTCTGGCACTGGCCTCCTTTGTAAAGCTTCATTTGTTTT
TCATCATTCACATTCCTTCATCTCTCCACCACCGCAACGCACACACGCAC
AGGTAGAACCCGAAGAGACCCGCTTGGTAGTGACCGAGGCGCCCTTTACT
CCCACAAGCCTCTCAACCTTCAGTACCCAAGTCATTTTCGAAGAATTCGG
ATTCGCGGCTTGTGCCAAGCTGCCTGCTGCTATTCTTTCCGGCCATCACT
ACACCTCAACCCAACCTCAGCAGGAACCCCAGCCGCAATGTGCCTTATTA
GGAGGAGGTAGAATTAATTGTGCCTTGGTCATAGACTCAGGCTTCAGCTT
TACACACGTTATACCCTTGTATAAAAACAGGGCCCAACGTGCAGGGATCC
GCCGCGTGAACGTGGGGGGGAAACTTCTGACCAACTTTTTGAAAGAGACC
GTTTCTTACCGACAGTGGAATATGATGGATGAATTTCAACTCATGAATGA
TGCGAAGGAGGCTTTGTGTTATGTGAGTCAAGACTTCGTGGCGGAAATGG
CTAAGCTCCGACCGGGGGGCGGGCCGAACCGACGCCTGCGTGCTCATGAG
GGGATACGACGAAATTTTGTTTTGCCTGATTTTCATAACACCATGAAGGG
GTATGTCCAAGACGAACAGCCGCGGCTGCATGAGCAATATCAGGAAGAGC
GAAAGGAAGAACCAGAACAGCAGGTGCTGTCGATGGAGGTGGAACGTTTC
GTCGTTCCTGAGGTGTTGTTCCGACCTTCAGATGTGGGTCTCCGTCAGGG
CGGCCTTCCTGAAGCGGTGGTCGAGGCTGTGGAATCCTGCGACATCGGGT
TGCGGGCGTCCTTGTACAGCAACATTATTCTAACGGGAGGGAATGTCTTA
TTTCCCGGCTTGGCGCAACGTCTGAAGACAGAGCTACGGGCTTTGGTGCC
TGAGTACTACTCTCTGGCCGTGCATACTCCGTCTGATCCCATCGGGTATG
CGTGGCAAGGAGGGGGTCGCTTTGCCCAGGAACAACCGCAAACGTTTGTG
ACCAAGGCACAGTACAATGAGTATGGTCCAGAGGCCTGCCAGGAGCATGT
GTTTGATGTGCAGTGGTAGACTGAAAGGATAAAAGAAGATATGGAATGGG
CCTTGTACACATAACCTCTTTTGCCA back to topCoding sequence (CDS) from alignment at chr2:661137..664712+ >NO02G02380.1 ID=NO02G02380.1|Name=NO02G02380.1|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at chr2:661137..664712+ (Nannochloropsis oceanica) ATGACATTCTCTCCTCTCCAATTTTGTTACGCAGGGGGTCGCGGGATTGA GCACGCGAGGTTGGAAGAGGCAGGAGCCAGGAGGCAAGGGGCGAGAATGC CGGCAGCCGCACCAGTCGCTTCGCCACGTAAAGGAGGGCACAAAGTACAC ACCAGCAGCAACAGGGTAGCAGGAGGAGGGGAAGGGCAAGGTAATATGCC TACGCTAGTGCTGGACAACGGGGCGTACCACCTTAAAGTGGGCTTTGCAG GAGACCCTGCGCCCCGCCTTCTCATGCCCAACTGCACGGCCAAGCTCAAG GGCCAGCTTCAGTTGCTGGTAGGCGACGATATTGACCTAGTGAACAACAC GGCTAATCTTCAATACACGCGGCCGTTCGATCGCGGCTATCTGACCAATT GGGAGGCCGAGAACCAAGTGTGGAAGCGGGCCTTTGGAGAGACCAACCTT AAAGTAGAACCCGAAGAGACCCGCTTGGTAGTGACCGAGGCGCCCTTTAC TCCCACAAGCCTCTCAACCTTCAGTACCCAAGTCATTTTCGAAGAATTCG GATTCGCGGCTTGTGCCAAGCTGCCTGCTGCTATTCTTTCCGGCCATCAC TACACCTCAACCCAACCTCAGCAGGAACCCCAGCCGCAATGTGCCTTATT AGGAGGAGGTAGAATTAATTGTGCCTTGGTCATAGACTCAGGCTTCAGCT TTACACACGTTATACCCTTGTATAAAAACAGGGCCCAACGTGCAGGGATC CGCCGCGTGAACGTGGGGGGGAAACTTCTGACCAACTTTTTGAAAGAGAC CGTTTCTTACCGACAGTGGAATATGATGGATGAATTTCAACTCATGAATG ATGCGAAGGAGGCTTTGTGTTATGTGAGTCAAGACTTCGTGGCGGAAATG GCTAAGCTCCGACCGGGGGGCGGGCCGAACCGACGCCTGCGTGCTCATGA GGGGATACGACGAAATTTTGTTTTGCCTGATTTTCATAACACCATGAAGG GGTATGTCCAAGACGAACAGCCGCGGCTGCATGAGCAATATCAGGAAGAG CGAAAGGAAGAACCAGAACAGCAGGTGCTGTCGATGGAGGTGGAACGTTT CGTCGTTCCTGAGGTGTTGTTCCGACCTTCAGATGTGGGTCTCCGTCAGG GCGGCCTTCCTGAAGCGGTGGTCGAGGCTGTGGAATCCTGCGACATCGGG TTGCGGGCGTCCTTGTACAGCAACATTATTCTAACGGGAGGGAATGTCTT ATTTCCCGGCTTGGCGCAACGTCTGAAGACAGAGCTACGGGCTTTGGTGC CTGAGTACTACTCTCTGGCCGTGCATACTCCGTCTGATCCCATCGGGTAT GCGTGGCAAGGAGGGGGTCGCTTTGCCCAGGAACAACCGCAAACGTTTGT GACCAAGGCACAGTACAATGAGTATGGTCCAGAGGCCTGCCAGGAGCATG TGTTTGATGTGCAGTGGTAG back to top
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