NO02G02290.2, NO02G02290.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02290.2
Unique NameNO02G02290.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1955
Alignment locationchr2:643644..646447 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:643644..646447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02290.2 vs.
Match: EWM30423.1 (gdp-man:man c -pp-dol alpha- -mannosyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 421.8 bits (1083), Expect = 2.800e-114
Identity = 201/273 (73.63%), Postives = 230/273 (84.25%), Query Frame = 0 
Query:   63 VGLVI--VIYYGVVLPLYRRTCRRRLGVAKDAITVAFFHPYCNAGGGGERVLWLTIKALASLHAKSIKRKQKPLHVFIYTGDHGVAPDEILRRAEAHFAVNLTNLPMPLSFVFVRGRQWLEAPRYPVLTMVGQSLGSILLAFVCLGDFLPDVFFDTTGCAFTYPVAALLGRCRIAAYVHYPTISTDMLSVVREQRPSYNNDRSLACSPWKSRLKLIYYHAFACLYGLCGFFVSLIIVNSSWTQAHIRSLWWLGRPRVWTVFPPCDTSALKDLP 334
            VGLV+  ++YYG+VLPLYR   RRR+G+AK AITVAFFHPYCNAGGGGERVLW+ +K LA LHAK IK  Q+PLHV IY+GD GV P EIL+RAE  F V L ++ MP++FV VRGR+WLEA RYP+LTMVGQSLGS+LL  VCL  F PDVF DTTGCAFTYP+ ALLGRCRIAAYVHYPTISTDML++VREQRPSYNNDR++A S  +S +KLIYY  FA LYGLCGFFVSL++ NSSWTQAHIRSLW LGR R+WTVFPPCDTSAL+  P
Sbjct:   10 VGLVVVAIVYYGLVLPLYRGISRRRMGIAKGAITVAFFHPYCNAGGGGERVLWMAVKTLALLHAKLIKSSQRPLHVLIYSGDIGVDPKEILQRAEDQFGVQLRDISMPVTFVDVRGREWLEAARYPILTMVGQSLGSLLLGLVCLFAFPPDVFVDTTGCAFTYPLTALLGRCRIAAYVHYPTISTDMLNLVREQRPSYNNDRAVAGSALRSHVKLIYYRIFAMLYGLCGFFVSLVMTNSSWTQAHIRSLWRLGRQRIWTVFPPCDTSALQVSP 282
The following BLAST results are available for this feature:
BLAST of NO02G02290.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30423.12.800e-11473.63gdp-man:man c -pp-dol alpha- -mannosyltransferase ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02290NO02G02290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02290.2NO02G02290.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02290.2.cds1NO02G02290.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02290.2.cds2NO02G02290.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02290.2.cds3NO02G02290.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02290.2.cds4NO02G02290.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02290.2.cds5NO02G02290.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02290.2 ID=NO02G02290.2|Name=NO02G02290.2|organism=Nannochloropsis oceanica|type=mRNA|length=1955bp
CAATAATAGGCAGGCCCACAGGGTGGATAAAATTTGACATGGCATCCAGC
ACACCAAACATCTACTCTCTTCCACCTTATTTTGTCCAAGCATTACTGAT
TTTGCACAGTGCCAGGCTCGTCTCCGGGAGGACAAACGCCTTGAGCTGCC
TTCAGCGAGTTCCACCTGCCTGTTCTCCTTTGCACACCATGGTGGACCTC
TCTGGCATTCTTCTGGCAAGTTGGGTGGGGCTTGTGATTGTCATATACTA
TGGCGTCGTCTTGCCCCTGTACCGCAGGACCTGCCGTCGACGTCTGGGGG
TGGCCAAGGATGCCATCACTGTCGCCTTCTTCCATCCCTATTGCAATGCG
GGTGGTGGTGGGGAGCGGGTGCTATGGCTGACCATCAAGGCCCTGGCCTC
GCTTCACGCAAAATCGATAAAGCGCAAGCAAAAGCCCCTGCATGTCTTCA
TCTACACTGGCGACCACGGTGTAGCCCCCGACGAGATCTTGCGGCGCGCC
GAGGCCCACTTTGCGGTGAATCTCACAAATTTGCCTATGCCACTGAGTTT
TGTCTTTGTTCGGGGCCGGCAGTGGTTGGAGGCACCACGCTATCCCGTCC
TGACCATGGTCGGGCAAAGCCTGGGCTCGATTCTTTTGGCCTTCGTGTGC
TTGGGCGATTTCCTTCCCGACGTATTTTTTGATACCACTGGCTGCGCTTT
CACGTACCCTGTGGCGGCCCTACTGGGACGATGCCGGATTGCGGCATACG
TGCATTATCCGACCATTAGTACGGACATGCTGAGCGTCGTCCGTGAGCAA
CGTCCATCCTACAACAACGATCGATCTCTCGCCTGCAGTCCTTGGAAGTC
CCGCCTTAAACTCATCTACTACCACGCATTTGCATGCCTCTACGGCCTGT
GTGGATTTTTCGTCTCCCTCATCATTGTCAACTCCAGCTGGACGCAGGCA
CATATTCGCTCCCTCTGGTGGCTGGGCAGGCCTCGAGTGTGGACCGTGTT
TCCTCCCTGTGATACCTCGGCGCTCAAGGACCTGCCACTGGCCCCCCGGG
AGCCCGTCATCCTCTCAGTAGGTCAGTTCCGTCCCGAGAAAGAGCACCCC
CTGCAAATCCGAGCCTTTGCCCGCTTCCTCAACAGTGGCAGCAGCAGCGG
CAGTACTGGCTCAGATAGTCTCGTTAACAATAAAGACATCAAGCTTGTCT
TGTTGGGGAGCTGTCGAGGGGCTGAGGACGAAAGACGGGTGGCGGCATTG
CGGGCCCTGGCAGCAGAGGCAGGGGTAGGAGGGCAAGTGGAGTTTGTAGT
GGGGGCGCCGTACCCTGATCTCAAGCGCTGGCTGGGTCGGGCGAGTGTCG
GGGTGCACACCATGTGGAACGAGCACTTTGGCATTTGTGTGGTGGAGTAC
ATGGTGCGTGCAAGGAAGTGAGAAAAGTGGGCGGAATGAGAGGAGTAACA
TTGGAGGAAGGTGTAGTCCTCTTGTCCTACCTGCGAAACATGAGGGTTGA
TGGCGAATGAACGACTATCAGTTTCTAGCGCATCTCTACATCCATTTCTC
ATACCCCTCTCCCCTCTTACTACCATTACCCCGAACTCAGGCCGCTGGAT
TGGTCACAGTGGCACATAATAGCGGCGGGCCCAAAGCTGACATTGTGGTG
CCCTTCCAAGGCGCACCCACGGGTATTTTAGCCGCAACTGAGGAAGAGTA
CGCACAAGCCTTCGCCCGTATTTTTGCTATGAATGAGACCAAGGAGCTCA
CTCCTTTCCGCATATCTGCTCGGGCATCGATAGACCGGTTCTCAGACGAG
GTCTTCCTGCGGGAAATTAGCAGGCTAATAGGACCGTTCTTGGGTCTGAA
AATATTCGATCGTCGTGAATCTTGCGCGGCCGAGAATTAGAACTAATGAT
GTTAAAAATACAAATTAAAGGACAATATTTTTGTATAAGAACTAATGATG
TTAAA
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protein sequence of NO02G02290.2

>NO02G02290.2-protein ID=NO02G02290.2-protein|Name=NO02G02290.2|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MASSTPNIYSLPPYFVQALLILHSARLVSGRTNALSCLQRVPPACSPLHT
MVDLSGILLASWVGLVIVIYYGVVLPLYRRTCRRRLGVAKDAITVAFFHP
YCNAGGGGERVLWLTIKALASLHAKSIKRKQKPLHVFIYTGDHGVAPDEI
LRRAEAHFAVNLTNLPMPLSFVFVRGRQWLEAPRYPVLTMVGQSLGSILL
AFVCLGDFLPDVFFDTTGCAFTYPVAALLGRCRIAAYVHYPTISTDMLSV
VREQRPSYNNDRSLACSPWKSRLKLIYYHAFACLYGLCGFFVSLIIVNSS
WTQAHIRSLWWLGRPRVWTVFPPCDTSALKDLPLAPREPVILSVGQFRPE
KEHPLQIRAFARFLNSGSSSGSTGSDSLVNNKDIKLVLLGSCRGAEDERR
VAALRALAAEAGVGGQVEFVVGAPYPDLKRWLGRASVGVHTMWNEHFGIC
VVEYMVRARK*
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mRNA from alignment at chr2:643644..646447+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02290.2 ID=NO02G02290.2|Name=NO02G02290.2|organism=Nannochloropsis oceanica|type=mRNA|length=2804bp|location=Sequence derived from alignment at chr2:643644..646447+ (Nannochloropsis oceanica)
CAATAATAGGCAGGCCCACAGGGTGGATAAAATTTGACATGGCATCCAGC
ACACCAAACATCTACTCTCTTCCACCTTATTTTGTCCAAGCATTACTGAT
TTTGCACAGTGCCAGGCTCGTCTCCGGGAGGACAAACGCCTTGAGCTGCC
TTCAGCGAGTTCCACCTGCCTGTTCTCCTTTGCACACCATGGTGGACCTC
TCTGGCATTCTTCTGGCAAGTTGGGTGGGGCTTGTGATTGTCATATACTA
TGGCGTCGTCTTGCCCCTGTACCGCAGGACCTGCCGTCGACGTCTGGGGG
TGGCCAAGGATGCCATCACTGTCGCCTTCTTCCATCCCTATTGGTGAAGT
ACAGTGGGGGCGGGGGCGGGGAAAGGGGGAATTATCAGAGGACTCTCTTT
CCCTGCTTCATGCTCACGCGAATTCCACCCTTCTCCACTGCAATACAGCA
ATGCGGGTGGTGGTGGGGAGCGGGTGCTATGGCTGACCATCAAGGCCCTG
GCCTCGCTTCACGCAAAATCGATAAAGCGCAAGCAAAAGCCCCTGCATGT
CTTCATCTACACTGGCGACCACGGTGTAGCCCCCGACGAGATCTTGCGGC
GCGCCGAGGCCCACTTTGCGGTGAATCTCACAAATTTGCCTATGCCACTG
AGTTTTGTCTTTGTTCGGGGCCGGCAGTGGTTGGAGGCACCACGCTATCC
CGTCCTGACCATGGTCGGGCAAAGCCTGGGCTCGATTCTTTTGGCCTTCG
TGTGCTTGGGCGATTTCCTTCCCGACGTATTTTTTGATACCACTGGCTGC
GCTTTCACGTACCCTGTGGCGGCCCTACTGGGACGATGCCGGATTGCGGC
ATACGTGCATTATCCGACCATTAGTACGGTGCGTTAGGGTTATTGGGGAA
AAAAAGAAAAGGAGAGGACAGGGCATGTATGTAACGCATGTTGACGAGTA
TCTGTTTCTGCGGTGTGTTCCGCTTGTCGTGCTCTTCTAATGATGGAAAG
TAATACTCAGCTTGTGCCCAGCGGGCAGACCACCAAGCCCATGCAATGTC
TCCACTGTACTCCATCTCATGCTTCCTCTCTCCGCACCAATAGGACATGC
TGAGCGTCGTCCGTGAGCAACGTCCATCCTACAACAACGATCGATCTCTC
GCCTGCAGTCCTTGGAAGTCCCGCCTTAAACTCATGTACGTATACACCAT
CTCTTCTTCCCAAGTTGGAGGGGTGGTGGAGAGGAAGAAACGGTGGGTCG
TCTGTCTGTTGCGTTGCAGTCACAAAGGCAACGTTAACCGTCATGTTGGC
CCATGTGTGGCTCTGCTAGTGTCGACTGCGGTTTAGGATCGGCAGGCAAC
GACATCGGGCCCTTGAGCATTGCCCCTCGGCCCTTTACCTATTCCTCTCT
CTGATTGACACTCATCTGTCCTCCCATTTCCTCCACTCCACCAAAATACA
AGCTACTACCACGCATTTGCATGCCTCTACGGCCTGTGTGGATTTTTCGT
CTCCCTCATCATTGTCAACTCCAGCTGGACGCAGGCACATATTCGCTCCC
TCTGGTGGCTGGGCAGGCCTCGAGTGTGGACCGTGTTTCCTCCCTGTGAT
ACCTCGGCGCTCAAGGTGCGTAAGTATTTGTTATGCGTGTGTAGGTGTCT
TTTTTTTTCGAAAGCCCACGGCGGTATGTAAGAAAGGAAAGGAAGACGTG
TGGAGAAGTTGAAGAAGAGAACACGACGGCGCGTGCCCACCTGCACCTTT
GTCTCTTTTTCATTTTTCTGAAGATGTGTTTATGATGGTCGAATGGCTCG
CCAACAAGCAGGAATGCGGCTACGCAAGCAAAGTAATGAATCCCTTAAAG
TCAATCAAGTGTCAAAATACTTCACAGGACCTGCCACTGGCCCCCCGGGA
GCCCGTCATCCTCTCAGTAGGTCAGTTCCGTCCCGAGAAAGAGCACCCCC
TGCAAATCCGAGCCTTTGCCCGCTTCCTCAACAGTGGCAGCAGCAGCGGC
AGTACTGGCTCAGATAGTCTCGTTAACAATAAAGACATCAAGCTTGTCTT
GTTGGGGAGCTGTCGAGGGGCTGAGGACGAAAGACGGGTGGCGGCATTGC
GGGCCCTGGCAGCAGAGGCAGGGGTAGGAGGGCAAGTGGAGTTTGTAGTG
GGGGCGCCGTACCCTGATCTCAAGCGCTGGCTGGGTCGGGCGAGTGTCGG
GGTGCACACCATGTGGAACGAGCACTTTGGCATTTGTGTGGTGGAGTACA
TGGTGCGTGCAAGGAAGTGAGAAAAGTGGGCGGAATGAGAGGAGTAACAT
TGGAGGAAGGTGTAGTCCTCTTGTCCTACCTGCGAAACATGAGGGTTGAT
GGCGAATGAACGACTATCAGTTTCTAGCGCATCTCTACATCCATTTCTCA
TACCCCTCTCCCCTCTTACTACCATTACCCCGAACTCAGGCCGCTGGATT
GGTCACAGTGGCACATAATAGCGGCGGGCCCAAAGCTGACATTGTGGTGC
CCTTCCAAGGCGCACCCACGGGTATTTTAGCCGCAACTGAGGAAGAGTAC
GCACAAGCCTTCGCCCGTATTTTTGCTATGAATGAGACCAAGGAGCTCAC
TCCTTTCCGCATATCTGCTCGGGCATCGATAGACCGGTTCTCAGACGAGG
TCTTCCTGCGGGAAATTAGCAGGCTAATAGGACCGTTCTTGGGTCTGAAA
ATATTCGATCGTCGTGAATCTTGCGCGGCCGAGAATTAGAACTAATGATG
TTAAAAATACAAATTAAAGGACAATATTTTTGTATAAGAACTAATGATGT
TAAA
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Coding sequence (CDS) from alignment at chr2:643644..646447+

>NO02G02290.2 ID=NO02G02290.2|Name=NO02G02290.2|organism=Nannochloropsis oceanica|type=CDS|length=1383bp|location=Sequence derived from alignment at chr2:643644..646447+ (Nannochloropsis oceanica)
ATGGCATCCAGCACACCAAACATCTACTCTCTTCCACCTTATTTTGTCCA
AGCATTACTGATTTTGCACAGTGCCAGGCTCGTCTCCGGGAGGACAAACG
CCTTGAGCTGCCTTCAGCGAGTTCCACCTGCCTGTTCTCCTTTGCACACC
ATGGTGGACCTCTCTGGCATTCTTCTGGCAAGTTGGGTGGGGCTTGTGAT
TGTCATATACTATGGCGTCGTCTTGCCCCTGTACCGCAGGACCTGCCGTC
GACGTCTGGGGGTGGCCAAGGATGCCATCACTGTCGCCTTCTTCCATCCC
TATTGCAATGCGGGTGGTGGTGGGGAGCGGGTGCTATGGCTGACCATCAA
GGCCCTGGCCTCGCTTCACGCAAAATCGATAAAGCGCAAGCAAAAGCCCC
TGCATGTCTTCATCTACACTGGCGACCACGGTGTAGCCCCCGACGAGATC
TTGCGGCGCGCCGAGGCCCACTTTGCGGTGAATCTCACAAATTTGCCTAT
GCCACTGAGTTTTGTCTTTGTTCGGGGCCGGCAGTGGTTGGAGGCACCAC
GCTATCCCGTCCTGACCATGGTCGGGCAAAGCCTGGGCTCGATTCTTTTG
GCCTTCGTGTGCTTGGGCGATTTCCTTCCCGACGTATTTTTTGATACCAC
TGGCTGCGCTTTCACGTACCCTGTGGCGGCCCTACTGGGACGATGCCGGA
TTGCGGCATACGTGCATTATCCGACCATTAGTACGGACATGCTGAGCGTC
GTCCGTGAGCAACGTCCATCCTACAACAACGATCGATCTCTCGCCTGCAG
TCCTTGGAAGTCCCGCCTTAAACTCATCTACTACCACGCATTTGCATGCC
TCTACGGCCTGTGTGGATTTTTCGTCTCCCTCATCATTGTCAACTCCAGC
TGGACGCAGGCACATATTCGCTCCCTCTGGTGGCTGGGCAGGCCTCGAGT
GTGGACCGTGTTTCCTCCCTGTGATACCTCGGCGCTCAAGGACCTGCCAC
TGGCCCCCCGGGAGCCCGTCATCCTCTCAGTAGGTCAGTTCCGTCCCGAG
AAAGAGCACCCCCTGCAAATCCGAGCCTTTGCCCGCTTCCTCAACAGTGG
CAGCAGCAGCGGCAGTACTGGCTCAGATAGTCTCGTTAACAATAAAGACA
TCAAGCTTGTCTTGTTGGGGAGCTGTCGAGGGGCTGAGGACGAAAGACGG
GTGGCGGCATTGCGGGCCCTGGCAGCAGAGGCAGGGGTAGGAGGGCAAGT
GGAGTTTGTAGTGGGGGCGCCGTACCCTGATCTCAAGCGCTGGCTGGGTC
GGGCGAGTGTCGGGGTGCACACCATGTGGAACGAGCACTTTGGCATTTGT
GTGGTGGAGTACATGGTGCGTGCAAGGAAGTGA
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Synonyms
Publications