NO02G02260.1, NO02G02260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02260.1
Unique NameNO02G02260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1821
Alignment locationchr2:636876..638696 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:636876..638696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02260.1 vs.
Match: XP_008604983.1 (hypothetical protein SDRG_01244 [Saprolegnia diclina VS20]; EQC41269.1 hypothetical protein SDRG_01244 [Saprolegnia diclina VS20])

HSP 1 Score: 236.1 bits (601), Expect = 2.700e-58
Identity = 140/384 (36.46%), Postives = 205/384 (53.39%), Query Frame = 0 
Query:   47 RAVVMQDAELLTGFDIQVLGSAAKMPTIRSSCPCIGVRVGARQMLFDCGEGTQRQFIHSILIPSKVQGIFITHMHGDHIFGLPGMLLSFLSLLNTTTNNAPPPSSPSSSSHAQWADIPKSRTLRVYGPVGLYNYVCMTLNLCEAKVGVNLSDGRPVIVVHELVGGEQFGGGGGGNGRDRRAAFVKRDSDFAMPGVVSRAIRPDADGFWTIPPFDDEVGGSSTVTPHSRKQNFVVRAGQVKHTVPTFGYIVQEDDKPGKVDVAQVRALGLSPGPAYKDLTEGRDVVLPDGKGVIRAREVVGPRRRGRKLAVLGDTCDPFSMSSLVRDADVLFHEATLENEMQGMAIARGHSTPSMAAMFAKHVRARRLVLTHFSNRYTSSSGEGR 431
            R+    + E  TGF++  LG+ A  P+I  +   + +++     LFDCGEG+Q+Q   S +  + ++ IF+TH+HGDHI+GLPG++ +  SL     +                  +P  + L +YGP G++ ++   LN+  A    N+++ R  I VHELV                 A  +KR+       +    I PD  G   + P  D+              N+ VRAG ++HTVP FGY+V+E  +PG ++ A  +A GL PGP YK L EGR V LPDG  ++   +V+ P  RGRK A+LGD+ D  +M+ L R+ADVL HE+TL + M   A+ RGHST SMA  FA+   A  LVLTHFS+R++ S    R
Sbjct:   22 RSSATPETEPFTGFELVFLGTGAGAPSIERNASGLVLQLHGAAWLFDCGEGSQKQMFQSNVRATAIERIFLTHLHGDHIYGLPGLVCTLNSLCGPDIDRE--------------TKLPTPKVLSIYGPRGVFAFLNTALNVSRA----NMTNIR--IAVHELVPLCD-------------ARTIKRERGPIHECLQHHLIHPDTSGDTPVWPILDDA-------------NYRVRAGFLQHTVPCFGYVVEEQTRPGHINAALAKARGLPPGPLYKQLKEGRAVPLPDGS-LLEPTDVMTPPIRGRKAAILGDSSDSLAMTELARNADVLVHESTLPHSMLAQAVPRGHSTSSMAGAFARLSNATLLVLTHFSSRFSYSRASAR 358
The following BLAST results are available for this feature:
BLAST of NO02G02260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008604983.12.700e-5836.46hypothetical protein SDRG_01244 [Saprolegnia dicli... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02260NO02G02260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02260.1NO02G02260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02260.1.cds1NO02G02260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02260.1 ID=NO02G02260.1|Name=NO02G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp
ACAGGTGCAACCTGATGAGAATAATGAACGCCGTGGGGGGCCAAATGGTG
GCGCGACGGACTGTCAGTGGCTTTAGGAGACGCCTCTATTTCTTTCCCCC
TGCCTCCTCCTCTGCCTCCACCCCTTCCTTCCACTCCTCCCACATGGCAC
GACGAGCTGTCGTCATGCAAGACGCCGAGCTCTTGACAGGCTTTGATATT
CAAGTCCTGGGCTCTGCGGCCAAGATGCCCACGATCCGCAGCAGCTGTCC
GTGCATTGGTGTACGGGTTGGAGCCAGGCAAATGCTTTTTGACTGCGGGG
AGGGCACACAACGCCAATTCATCCACTCCATCCTCATTCCCAGCAAGGTC
CAAGGTATTTTCATCACTCACATGCACGGTGATCATATCTTTGGGCTTCC
TGGGATGCTGCTCAGCTTTCTGAGCCTCCTCAACACCACAACAAACAACG
CCCCTCCGCCCTCATCCCCTTCCTCGTCCTCGCACGCCCAATGGGCAGAT
ATACCGAAATCTCGGACCTTGCGCGTTTACGGGCCTGTGGGTCTGTATAA
TTACGTGTGTATGACTCTGAATCTTTGTGAGGCGAAAGTAGGCGTAAACT
TGTCAGATGGACGACCAGTGATAGTGGTGCATGAGTTGGTTGGTGGGGAG
CAATTTGGAGGAGGGGGTGGGGGTAACGGGAGGGATCGACGCGCGGCATT
TGTTAAAAGGGATTCGGATTTTGCGATGCCCGGGGTAGTAAGTCGTGCAA
TAAGACCTGATGCGGATGGGTTTTGGACGATTCCACCCTTTGACGACGAG
GTCGGCGGTAGCAGTACTGTGACACCGCACAGTCGGAAACAGAATTTCGT
CGTCCGTGCAGGACAAGTTAAGCATACAGTGCCTACCTTTGGTTATATCG
TGCAGGAGGACGATAAACCAGGGAAAGTGGACGTGGCACAAGTAAGAGCC
CTCGGGTTGAGTCCAGGGCCGGCATACAAGGATTTAACGGAGGGGAGGGA
TGTGGTCTTGCCTGATGGGAAGGGAGTGATCAGGGCGAGGGAGGTTGTGG
GTCCACGGAGAAGGGGTAGGAAATTAGCGGTGCTTGGAGATACGTGTGAT
CCATTTTCGATGAGTTCTTTAGTGAGGGACGCTGACGTCCTTTTTCACGA
GGCGACGCTTGAGAATGAGATGCAGGGCATGGCGATAGCAAGAGGCCACT
CGACCCCCTCGATGGCGGCTATGTTTGCGAAGCATGTGAGGGCACGACGG
TTGGTGTTGACACATTTCAGCAATCGATACACGTCGTCGAGTGGCGAAGG
GAGGGAAGAGGGAGGGATTGAGGGGGGAATTGGAGGAGGAGGAGGAGGAG
GAGGGGCGACGTATGGGCCGGGGAAGGAGCAGCAATTTCAAGCGAGGCCC
CGGGGTGCCGTTGCACGGTTGTTACAGCAGGCGGTGGAGGCGCTGGGGGA
TGAGAGGCGAGTTCTGGTGGCGGAGGACTTTTTGAAGATTCATGTTCCGC
CTGAAGGATTTCATATGTTGCCTCTTCCTGCTGCTGCCGCTGCTGCTGCT
GCTGCTAGCACAGCTACAAATGCTACAGAATCGACTGCTGCTGCTGCTGC
CGCTGGTGGTGGGGGTGAAGGTTTTGGTGTTGTTGTTGCTGGTGGTGATG
GAGCAAGGAGTAGGGTTCGGAGAAAGGAGGATATAGAACAGATGAGGGAG
GAGGAAGCATGTCCGTCATGAACACGTCAGTGTACAGTTTCTCAAACAAA
TGAACGAAAGTAATTGCATACATAAATAAATACGTACCTGAAAGAAAAAG
AAATCAAAATGTAATAAAAAG
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protein sequence of NO02G02260.1

>NO02G02260.1-protein ID=NO02G02260.1-protein|Name=NO02G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=569bp
MRIMNAVGGQMVARRTVSGFRRRLYFFPPASSSASTPSFHSSHMARRAVV
MQDAELLTGFDIQVLGSAAKMPTIRSSCPCIGVRVGARQMLFDCGEGTQR
QFIHSILIPSKVQGIFITHMHGDHIFGLPGMLLSFLSLLNTTTNNAPPPS
SPSSSSHAQWADIPKSRTLRVYGPVGLYNYVCMTLNLCEAKVGVNLSDGR
PVIVVHELVGGEQFGGGGGGNGRDRRAAFVKRDSDFAMPGVVSRAIRPDA
DGFWTIPPFDDEVGGSSTVTPHSRKQNFVVRAGQVKHTVPTFGYIVQEDD
KPGKVDVAQVRALGLSPGPAYKDLTEGRDVVLPDGKGVIRAREVVGPRRR
GRKLAVLGDTCDPFSMSSLVRDADVLFHEATLENEMQGMAIARGHSTPSM
AAMFAKHVRARRLVLTHFSNRYTSSSGEGREEGGIEGGIGGGGGGGGATY
GPGKEQQFQARPRGAVARLLQQAVEALGDERRVLVAEDFLKIHVPPEGFH
MLPLPAAAAAAAAASTATNATESTAAAAAAGGGGEGFGVVVAGGDGARSR
VRRKEDIEQMREEEACPS*
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mRNA from alignment at chr2:636876..638696+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02260.1 ID=NO02G02260.1|Name=NO02G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp|location=Sequence derived from alignment at chr2:636876..638696+ (Nannochloropsis oceanica)
ACAGGTGCAACCTGATGAGAATAATGAACGCCGTGGGGGGCCAAATGGTG
GCGCGACGGACTGTCAGTGGCTTTAGGAGACGCCTCTATTTCTTTCCCCC
TGCCTCCTCCTCTGCCTCCACCCCTTCCTTCCACTCCTCCCACATGGCAC
GACGAGCTGTCGTCATGCAAGACGCCGAGCTCTTGACAGGCTTTGATATT
CAAGTCCTGGGCTCTGCGGCCAAGATGCCCACGATCCGCAGCAGCTGTCC
GTGCATTGGTGTACGGGTTGGAGCCAGGCAAATGCTTTTTGACTGCGGGG
AGGGCACACAACGCCAATTCATCCACTCCATCCTCATTCCCAGCAAGGTC
CAAGGTATTTTCATCACTCACATGCACGGTGATCATATCTTTGGGCTTCC
TGGGATGCTGCTCAGCTTTCTGAGCCTCCTCAACACCACAACAAACAACG
CCCCTCCGCCCTCATCCCCTTCCTCGTCCTCGCACGCCCAATGGGCAGAT
ATACCGAAATCTCGGACCTTGCGCGTTTACGGGCCTGTGGGTCTGTATAA
TTACGTGTGTATGACTCTGAATCTTTGTGAGGCGAAAGTAGGCGTAAACT
TGTCAGATGGACGACCAGTGATAGTGGTGCATGAGTTGGTTGGTGGGGAG
CAATTTGGAGGAGGGGGTGGGGGTAACGGGAGGGATCGACGCGCGGCATT
TGTTAAAAGGGATTCGGATTTTGCGATGCCCGGGGTAGTAAGTCGTGCAA
TAAGACCTGATGCGGATGGGTTTTGGACGATTCCACCCTTTGACGACGAG
GTCGGCGGTAGCAGTACTGTGACACCGCACAGTCGGAAACAGAATTTCGT
CGTCCGTGCAGGACAAGTTAAGCATACAGTGCCTACCTTTGGTTATATCG
TGCAGGAGGACGATAAACCAGGGAAAGTGGACGTGGCACAAGTAAGAGCC
CTCGGGTTGAGTCCAGGGCCGGCATACAAGGATTTAACGGAGGGGAGGGA
TGTGGTCTTGCCTGATGGGAAGGGAGTGATCAGGGCGAGGGAGGTTGTGG
GTCCACGGAGAAGGGGTAGGAAATTAGCGGTGCTTGGAGATACGTGTGAT
CCATTTTCGATGAGTTCTTTAGTGAGGGACGCTGACGTCCTTTTTCACGA
GGCGACGCTTGAGAATGAGATGCAGGGCATGGCGATAGCAAGAGGCCACT
CGACCCCCTCGATGGCGGCTATGTTTGCGAAGCATGTGAGGGCACGACGG
TTGGTGTTGACACATTTCAGCAATCGATACACGTCGTCGAGTGGCGAAGG
GAGGGAAGAGGGAGGGATTGAGGGGGGAATTGGAGGAGGAGGAGGAGGAG
GAGGGGCGACGTATGGGCCGGGGAAGGAGCAGCAATTTCAAGCGAGGCCC
CGGGGTGCCGTTGCACGGTTGTTACAGCAGGCGGTGGAGGCGCTGGGGGA
TGAGAGGCGAGTTCTGGTGGCGGAGGACTTTTTGAAGATTCATGTTCCGC
CTGAAGGATTTCATATGTTGCCTCTTCCTGCTGCTGCCGCTGCTGCTGCT
GCTGCTAGCACAGCTACAAATGCTACAGAATCGACTGCTGCTGCTGCTGC
CGCTGGTGGTGGGGGTGAAGGTTTTGGTGTTGTTGTTGCTGGTGGTGATG
GAGCAAGGAGTAGGGTTCGGAGAAAGGAGGATATAGAACAGATGAGGGAG
GAGGAAGCATGTCCGTCATGAACACGTCAGTGTACAGTTTCTCAAACAAA
TGAACGAAAGTAATTGCATACATAAATAAATACGTACCTGAAAGAAAAAG
AAATCAAAATGTAATAAAAAG
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Coding sequence (CDS) from alignment at chr2:636876..638696+

>NO02G02260.1 ID=NO02G02260.1|Name=NO02G02260.1|organism=Nannochloropsis oceanica|type=CDS|length=1707bp|location=Sequence derived from alignment at chr2:636876..638696+ (Nannochloropsis oceanica)
ATGAGAATAATGAACGCCGTGGGGGGCCAAATGGTGGCGCGACGGACTGT
CAGTGGCTTTAGGAGACGCCTCTATTTCTTTCCCCCTGCCTCCTCCTCTG
CCTCCACCCCTTCCTTCCACTCCTCCCACATGGCACGACGAGCTGTCGTC
ATGCAAGACGCCGAGCTCTTGACAGGCTTTGATATTCAAGTCCTGGGCTC
TGCGGCCAAGATGCCCACGATCCGCAGCAGCTGTCCGTGCATTGGTGTAC
GGGTTGGAGCCAGGCAAATGCTTTTTGACTGCGGGGAGGGCACACAACGC
CAATTCATCCACTCCATCCTCATTCCCAGCAAGGTCCAAGGTATTTTCAT
CACTCACATGCACGGTGATCATATCTTTGGGCTTCCTGGGATGCTGCTCA
GCTTTCTGAGCCTCCTCAACACCACAACAAACAACGCCCCTCCGCCCTCA
TCCCCTTCCTCGTCCTCGCACGCCCAATGGGCAGATATACCGAAATCTCG
GACCTTGCGCGTTTACGGGCCTGTGGGTCTGTATAATTACGTGTGTATGA
CTCTGAATCTTTGTGAGGCGAAAGTAGGCGTAAACTTGTCAGATGGACGA
CCAGTGATAGTGGTGCATGAGTTGGTTGGTGGGGAGCAATTTGGAGGAGG
GGGTGGGGGTAACGGGAGGGATCGACGCGCGGCATTTGTTAAAAGGGATT
CGGATTTTGCGATGCCCGGGGTAGTAAGTCGTGCAATAAGACCTGATGCG
GATGGGTTTTGGACGATTCCACCCTTTGACGACGAGGTCGGCGGTAGCAG
TACTGTGACACCGCACAGTCGGAAACAGAATTTCGTCGTCCGTGCAGGAC
AAGTTAAGCATACAGTGCCTACCTTTGGTTATATCGTGCAGGAGGACGAT
AAACCAGGGAAAGTGGACGTGGCACAAGTAAGAGCCCTCGGGTTGAGTCC
AGGGCCGGCATACAAGGATTTAACGGAGGGGAGGGATGTGGTCTTGCCTG
ATGGGAAGGGAGTGATCAGGGCGAGGGAGGTTGTGGGTCCACGGAGAAGG
GGTAGGAAATTAGCGGTGCTTGGAGATACGTGTGATCCATTTTCGATGAG
TTCTTTAGTGAGGGACGCTGACGTCCTTTTTCACGAGGCGACGCTTGAGA
ATGAGATGCAGGGCATGGCGATAGCAAGAGGCCACTCGACCCCCTCGATG
GCGGCTATGTTTGCGAAGCATGTGAGGGCACGACGGTTGGTGTTGACACA
TTTCAGCAATCGATACACGTCGTCGAGTGGCGAAGGGAGGGAAGAGGGAG
GGATTGAGGGGGGAATTGGAGGAGGAGGAGGAGGAGGAGGGGCGACGTAT
GGGCCGGGGAAGGAGCAGCAATTTCAAGCGAGGCCCCGGGGTGCCGTTGC
ACGGTTGTTACAGCAGGCGGTGGAGGCGCTGGGGGATGAGAGGCGAGTTC
TGGTGGCGGAGGACTTTTTGAAGATTCATGTTCCGCCTGAAGGATTTCAT
ATGTTGCCTCTTCCTGCTGCTGCCGCTGCTGCTGCTGCTGCTAGCACAGC
TACAAATGCTACAGAATCGACTGCTGCTGCTGCTGCCGCTGGTGGTGGGG
GTGAAGGTTTTGGTGTTGTTGTTGCTGGTGGTGATGGAGCAAGGAGTAGG
GTTCGGAGAAAGGAGGATATAGAACAGATGAGGGAGGAGGAAGCATGTCC
GTCATGA
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Synonyms
Publications