NO02G02250.1, NO02G02250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02250.1
Unique NameNO02G02250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length999
Alignment locationchr2:635419..636726 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:635419..636726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02250.1 vs.
Match: EWM30434.1 (protein cbby [Nannochloropsis gaditana])

HSP 1 Score: 426.4 bits (1095), Expect = 7.100e-116
Identity = 213/279 (76.34%), Postives = 239/279 (85.66%), Query Frame = 0 
Query:    9 VVASLLLAPAQAFLRHAT--PRTRNRATVRMMAAGIGNKASWALLFDCDGVLADTERDGHRPCFNIAFQQKGIDCTWDVDLYGKLLEVGGGKERMTAHWNKVGWPPGYDTDFSRKELVQELHLLKTKLFMDYIEGGKLPLRPGVLRVVDAAIAAGVPLGVCSTSNDKAVRTLVRVLMGKEREAKLKIFAGDVVPKKKPSPDIYLLAKETMGLDAAHTVVIEDSHIGLTAAKAAGMMCVVTKSSYTEKEDFRAADRVIAELGESEEKGGISFEELVALGM 286
            +V  LLL+ A+AF+R      RT  R  VRMMA    + A+WALLFDCDGVLADTERDGHRPCFN+AF++KGIDCTWDV LYG LLEVGGGKERMTAHWNKVGWP GYD+D  R++LV+ELH+LKT LFM+YIE GKLPLRPGVLRVVDAAIAAGVPLGVCSTSNDKAVRTL+RVLMG+ER +  +IFAGDVVPKKKP PDIYLLAKE MGLDA  TVVIEDSHIGLTAAKAAGM C+VTKSSYT  EDFRAADRV+ ELG+ E  GG+SF++L ALG+
Sbjct:   13 LVFILLLSTARAFMRSPVLGSRTPRRGNVRMMAGD--SNANWALLFDCDGVLADTERDGHRPCFNLAFKEKGIDCTWDVVLYGNLLEVGGGKERMTAHWNKVGWPSGYDSDAKRQDLVRELHMLKTNLFMNYIEEGKLPLRPGVLRVVDAAIAAGVPLGVCSTSNDKAVRTLIRVLMGEERMSHFQIFAGDVVPKKKPWPDIYLLAKEQMGLDARRTVVIEDSHIGLTAAKAAGMKCLVTKSSYTANEDFRAADRVVEELGKDEAGGGVSFKDLEALGL 289
The following BLAST results are available for this feature:
BLAST of NO02G02250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30434.17.100e-11676.34protein cbby [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02250NO02G02250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02250.1NO02G02250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02250.1.cds1NO02G02250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02250.1.cds2NO02G02250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02250.1 ID=NO02G02250.1|Name=NO02G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=999bp
ACAGGTACCATCGCCATGGCTAGACCTTCTTTTTTCCTGGTGGTTGCCTC
TCTTCTACTGGCCCCGGCGCAGGCATTTCTGCGGCATGCCACTCCACGAA
CTCGTAACAGGGCCACAGTGCGGATGATGGCAGCCGGCATCGGCAACAAG
GCGAGCTGGGCGCTTTTGTTTGACTGCGACGGCGTCCTGGCTGACACAGA
GCGAGACGGACATCGTCCATGCTTCAATATTGCTTTTCAGCAAAAAGGGA
TCGACTGCACTTGGGACGTCGATTTGTATGGCAAGCTTCTTGAGGTTGGT
GGCGGGAAGGAACGCATGACGGCACATTGGAACAAGGTCGGCTGGCCCCC
AGGGTATGACACTGATTTTTCCCGCAAAGAGCTCGTGCAAGAACTCCACC
TGCTTAAAACCAAGCTATTTATGGATTATATTGAAGGAGGCAAGCTGCCT
TTGCGTCCAGGGGTGTTGCGTGTAGTAGATGCCGCCATTGCTGCAGGGGT
GCCTCTCGGAGTGTGCTCCACGTCAAATGACAAGGCCGTGCGCACGTTGG
TCCGTGTCTTGATGGGTAAGGAACGGGAGGCTAAACTCAAGATCTTCGCA
GGGGATGTCGTCCCGAAGAAAAAGCCATCGCCTGACATTTATTTGTTGGC
GAAGGAGACCATGGGTTTGGATGCTGCTCATACCGTTGTGATAGAAGATT
CGCATATTGGTCTCACAGCCGCTAAGGCGGCAGGAATGATGTGCGTGGTA
ACGAAGAGCTCCTACACTGAAAAAGAGGATTTCCGGGCGGCTGATCGGGT
GATTGCTGAATTGGGGGAAAGTGAGGAGAAGGGGGGAATTTCTTTTGAGG
AGTTGGTGGCTTTAGGGATGGGAGGAGGAAGGATTTGAGAGGAGGATGTC
ATGGAGTGACGGAGAGGTCGAGTACGCTATGTACATTGGGAACTTATTAC
AGTGCACGTACTAATGAGTGTACAAATAGAAAAATAGACTAGTCGTTGC
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protein sequence of NO02G02250.1

>NO02G02250.1-protein ID=NO02G02250.1-protein|Name=NO02G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MARPSFFLVVASLLLAPAQAFLRHATPRTRNRATVRMMAAGIGNKASWAL
LFDCDGVLADTERDGHRPCFNIAFQQKGIDCTWDVDLYGKLLEVGGGKER
MTAHWNKVGWPPGYDTDFSRKELVQELHLLKTKLFMDYIEGGKLPLRPGV
LRVVDAAIAAGVPLGVCSTSNDKAVRTLVRVLMGKEREAKLKIFAGDVVP
KKKPSPDIYLLAKETMGLDAAHTVVIEDSHIGLTAAKAAGMMCVVTKSSY
TEKEDFRAADRVIAELGESEEKGGISFEELVALGMGGGRI*
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mRNA from alignment at chr2:635419..636726-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02250.1 ID=NO02G02250.1|Name=NO02G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp|location=Sequence derived from alignment at chr2:635419..636726- (Nannochloropsis oceanica)
ACAGGTACCATCGCCATGGCTAGACCTTCTTTTTTCCTGGTGGTTGCCTC
TCTTCTACTGGCCCCGGCGCAGGCATTTCTGCGGCATGCCACTCCACGAA
CTCGTAACAGGGCCACAGTGCGGATGATGGCAGCCGGCATCGGCAACAAG
GCGAGCTGGGCGCTTTTGTTTGACTGCGACGGCGTCCTGGCTGACACAGA
GCGAGACGGACATCGTCCATGCTTCAATATTGCTTTTCAGCAAAAAGGGA
TCGACTGCACTTGGGACGTCGATTTGTATGGCAAGCTTCTTGAGGTACGT
CCCTGCGCTTTGTATGTGAGCCATGAGCATTCAGCCAAGCCATAACTCTG
TATAATTCGTTGGGTGGAAGCTTGACTGTGCAAAATTACTTTCAATTAGC
TTAAGGGCTTATGTACGAAGCAAATCTTGGAGGCCGGTGGGGTATATATG
CTCCTAGCTGACCATGTCGTCCATCATCCACCCAACCCTCGCCTCCACAA
CCTTCCCCCCTCAATTCAACATCCACACACAAATTGCAAAAAAAAAATGT
CCACAAAATCCCTAATGACTGCTCTTCTACCATTTACATAACATAATGCA
TAGGTTGGTGGCGGGAAGGAACGCATGACGGCACATTGGAACAAGGTCGG
CTGGCCCCCAGGGTATGACACTGATTTTTCCCGCAAAGAGCTCGTGCAAG
AACTCCACCTGCTTAAAACCAAGCTATTTATGGATTATATTGAAGGAGGC
AAGCTGCCTTTGCGTCCAGGGGTGTTGCGTGTAGTAGATGCCGCCATTGC
TGCAGGGGTGCCTCTCGGAGTGTGCTCCACGTCAAATGACAAGGCCGTGC
GCACGTTGGTCCGTGTCTTGATGGGTAAGGAACGGGAGGCTAAACTCAAG
ATCTTCGCAGGGGATGTCGTCCCGAAGAAAAAGCCATCGCCTGACATTTA
TTTGTTGGCGAAGGAGACCATGGGTTTGGATGCTGCTCATACCGTTGTGA
TAGAAGATTCGCATATTGGTCTCACAGCCGCTAAGGCGGCAGGAATGATG
TGCGTGGTAACGAAGAGCTCCTACACTGAAAAAGAGGATTTCCGGGCGGC
TGATCGGGTGATTGCTGAATTGGGGGAAAGTGAGGAGAAGGGGGGAATTT
CTTTTGAGGAGTTGGTGGCTTTAGGGATGGGAGGAGGAAGGATTTGAGAG
GAGGATGTCATGGAGTGACGGAGAGGTCGAGTACGCTATGTACATTGGGA
ACTTATTACAGTGCACGTACTAATGAGTGTACAAATAGAAAAATAGACTA
GTCGTTGC
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Coding sequence (CDS) from alignment at chr2:635419..636726-

>NO02G02250.1 ID=NO02G02250.1|Name=NO02G02250.1|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at chr2:635419..636726- (Nannochloropsis oceanica)
ATGGCTAGACCTTCTTTTTTCCTGGTGGTTGCCTCTCTTCTACTGGCCCC
GGCGCAGGCATTTCTGCGGCATGCCACTCCACGAACTCGTAACAGGGCCA
CAGTGCGGATGATGGCAGCCGGCATCGGCAACAAGGCGAGCTGGGCGCTT
TTGTTTGACTGCGACGGCGTCCTGGCTGACACAGAGCGAGACGGACATCG
TCCATGCTTCAATATTGCTTTTCAGCAAAAAGGGATCGACTGCACTTGGG
ACGTCGATTTGTATGGCAAGCTTCTTGAGGTTGGTGGCGGGAAGGAACGC
ATGACGGCACATTGGAACAAGGTCGGCTGGCCCCCAGGGTATGACACTGA
TTTTTCCCGCAAAGAGCTCGTGCAAGAACTCCACCTGCTTAAAACCAAGC
TATTTATGGATTATATTGAAGGAGGCAAGCTGCCTTTGCGTCCAGGGGTG
TTGCGTGTAGTAGATGCCGCCATTGCTGCAGGGGTGCCTCTCGGAGTGTG
CTCCACGTCAAATGACAAGGCCGTGCGCACGTTGGTCCGTGTCTTGATGG
GTAAGGAACGGGAGGCTAAACTCAAGATCTTCGCAGGGGATGTCGTCCCG
AAGAAAAAGCCATCGCCTGACATTTATTTGTTGGCGAAGGAGACCATGGG
TTTGGATGCTGCTCATACCGTTGTGATAGAAGATTCGCATATTGGTCTCA
CAGCCGCTAAGGCGGCAGGAATGATGTGCGTGGTAACGAAGAGCTCCTAC
ACTGAAAAAGAGGATTTCCGGGCGGCTGATCGGGTGATTGCTGAATTGGG
GGAAAGTGAGGAGAAGGGGGGAATTTCTTTTGAGGAGTTGGTGGCTTTAG
GGATGGGAGGAGGAAGGATTTGA
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Synonyms
Publications