NO02G02190.1, NO02G02190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02190.1
Unique NameNO02G02190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length300
Alignment locationchr2:615426..616339 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:615426..616339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02190.1 vs.
Match: EWM30458.1 (hypothetical protein Naga_100100g2 [Nannochloropsis gaditana])

HSP 1 Score: 146.7 bits (369), Expect = 3.700e-32
Identity = 67/86 (77.91%), Postives = 77/86 (89.53%), Query Frame = 0 
Query:   14 MTMGAGLFGASLGIFVKMASNSMRKIPLRREPWDYPLFMIVGTWVGYKYVSLEASLTERVNEKRAALEKPPVELGGIMTTLKKAAE 100
            MT+G GL GAS GIFVK+ASNSMRKIPLRREPWDYP+FM+VG WVGYKYV+LE SL ERVNEKRA L+K PV LGG++TT+K+AAE
Sbjct:    1 MTLGTGLVGASFGIFVKLASNSMRKIPLRREPWDYPIFMLVGAWVGYKYVALEESLRERVNEKRAILDKEPVHLGGVLTTIKEAAE 86
The following BLAST results are available for this feature:
BLAST of NO02G02190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30458.13.700e-3277.91hypothetical protein Naga_100100g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02190NO02G02190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02190.1NO02G02190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02190.1.cds1NO02G02190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02190.1.cds2NO02G02190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02190.1.cds3NO02G02190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02190.1 ID=NO02G02190.1|Name=NO02G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=300bp
ATGCCCCTGGAAGGCTCAGAAGGCCCCAATGAGGCAACCATGACGATGGG
GGCGGGCCTTTTCGGGGCCTCCTTGGGCATCTTCGTCAAGATGGCCAGCA
ACAGCATGCGCAAGATACCACTTCGACGAGAGCCGTGGGACTACCCCTTG
TTCATGATAGTGGGCACATGGGTGGGGTACAAGTACGTCTCGCTGGAAGC
GAGTCTGACGGAGCGGGTGAACGAGAAGCGGGCCGCATTGGAGAAGCCTC
CTGTGGAACTGGGTGGGATTATGACGACGCTCAAGAAGGCGGCGGAGTAA
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protein sequence of NO02G02190.1

>NO02G02190.1-protein ID=NO02G02190.1-protein|Name=NO02G02190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MPLEGSEGPNEATMTMGAGLFGASLGIFVKMASNSMRKIPLRREPWDYPL
FMIVGTWVGYKYVSLEASLTERVNEKRAALEKPPVELGGIMTTLKKAAE*
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mRNA from alignment at chr2:615426..616339+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02190.1 ID=NO02G02190.1|Name=NO02G02190.1|organism=Nannochloropsis oceanica|type=mRNA|length=914bp|location=Sequence derived from alignment at chr2:615426..616339+ (Nannochloropsis oceanica)
ATGCCCCTGGAAGGCTCAGAAGGCCCCAATGAGGTATAATAGGGAACGAG
AAACACAATTAAAGTCCTCGATCAATCGTGATGATACCATTCCAAAAACC
CACAGCTCTGGGAGCATGCGAAGCAGCCCATGCCAACAAGCAGAACACAA
TCGAAAGGCATGCTTGGTGGGATTGGCGGGGTTTTGTCTTGTTGTCATGG
TAGAATTCGGTCAGCAAGTGCCTCATCCATCTCTTTCTCTTTCCCTCCCT
TGACCAGGCAACCATGACGATGGGGGCGGGCCTTTTCGGGGCCTCCTTGG
GCATCTTCGTCAAGATGGCCAGCAACAGCATGCGCAAGATACCACTTCGA
CGAGGTAAATAATTGGTAGTTGGTGGAGTGGGGGCGTGGGATCGGGTGGG
AGAAAGCTACAGGAGAGGAGCCAAGTCAGGCAGGAAAGCGAAGGACTTCT
GGGTACGCCCTAGTAGCCGCACGCGTAGCCCTGCACCAGATTAAAGAACA
CCCCCTTTGGTAGAAAAAGACGAGTAGCATGTGGGCTGCAAGCGGATTTC
AGAGCGAGAAAGGGTTGGTAGAAATGGTGGACATCCCTAGCCCACCTGCG
GGTCTCATGATGCGACTACATGCATGCCCTCACCTTCAAGAAACATAGCA
TTGCGTGATTGCCAACACCCAAGAATCCAGATGACTCACCAAAATATATT
CTGCTCCTCAACTCCTTTCCCTCCCCTTCTTTCGAACAAAACAGAGCCGT
GGGACTACCCCTTGTTCATGATAGTGGGCACATGGGTGGGGTACAAGTAC
GTCTCGCTGGAAGCGAGTCTGACGGAGCGGGTGAACGAGAAGCGGGCCGC
ATTGGAGAAGCCTCCTGTGGAACTGGGTGGGATTATGACGACGCTCAAGA
AGGCGGCGGAGTAA
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Coding sequence (CDS) from alignment at chr2:615426..616339+

>NO02G02190.1 ID=NO02G02190.1|Name=NO02G02190.1|organism=Nannochloropsis oceanica|type=CDS|length=300bp|location=Sequence derived from alignment at chr2:615426..616339+ (Nannochloropsis oceanica)
ATGCCCCTGGAAGGCTCAGAAGGCCCCAATGAGGCAACCATGACGATGGG
GGCGGGCCTTTTCGGGGCCTCCTTGGGCATCTTCGTCAAGATGGCCAGCA
ACAGCATGCGCAAGATACCACTTCGACGAGAGCCGTGGGACTACCCCTTG
TTCATGATAGTGGGCACATGGGTGGGGTACAAGTACGTCTCGCTGGAAGC
GAGTCTGACGGAGCGGGTGAACGAGAAGCGGGCCGCATTGGAGAAGCCTC
CTGTGGAACTGGGTGGGATTATGACGACGCTCAAGAAGGCGGCGGAGTAA
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Synonyms
Publications