NO02G02160.1, NO02G02160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02160.1
Unique NameNO02G02160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1834
Alignment locationchr2:608238..610287 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:608238..610287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G02160.1 vs.
Match: EWM30444.1 (formate nitrite transporter [Nannochloropsis gaditana])

HSP 1 Score: 465.3 bits (1196), Expect = 1.600e-127
Identity = 250/331 (75.53%), Postives = 287/331 (86.71%), Query Frame = 0
Query:    1 MKFTTCLALAMCMASASTSASFFPSTNTKKQTMSVPPPARRLLTKVRGGSDS--SIVVQPLMKAPAEAYKTVLTLGIKKANQPASKILLLGLVAGMQVGIGAAMAVATLGGVPLLQEQNPALAKVLFGIVGLPCSLLLVVATGSELFTGNTAMVGTAFFEGKVSRQQLAKSWGCSYLGNLLGASFLAILCNYAGVFSQAAGTFTAVADAKASLPFGVAVARGIVCNWLVCSAVWCSTAAADLVSKAVAILMIITIFAALGFEHSIANMFVGPFGALQKSSRTSFLKFFFKNLVPVTIGNIIGGSLLMAGTQHLAFGGKNMVSPPSSSSDKK 330
            MK +T   L M MA+AS S S F S++   +T+S  P   RL++KVRGG+DS  SIV QPLMKAPA+AYKTVL LG+KKA QPASKILLLG++AG+QVGIGAAMAVATLGGVPL+QEQNPALAK+LFGI GLPCSLL+V+ATG+ELFTGNTA+VGTAFFEGK+S QQL KSW CSY GNL+G   LA+LCNYAGVFSQAAGTFTAVADAKA+LPFGVAVARGI+CNWLVC+AVW STAAADLVSKAVA LMIITIFA+LGFEHSIANMFVGPFGA+QK+SRT F+ FF KNLVPVTIGNI+GGS LMAG QHLAFGG++  S  ++  +K+
Sbjct:    1 MKISTLCVLTMGMAAASASVSSFSSSSKPAKTLSTVP---RLVSKVRGGNDSPASIVPQPLMKAPADAYKTVLALGVKKACQPASKILLLGVMAGLQVGIGAAMAVATLGGVPLMQEQNPALAKLLFGIAGLPCSLLMVMATGAELFTGNTAVVGTAFFEGKISLQQLLKSWSCSYAGNLIGGGLLALLCNYAGVFSQAAGTFTAVADAKAALPFGVAVARGIICNWLVCTAVWVSTAAADLVSKAVATLMIITIFASLGFEHSIANMFVGPFGAMQKTSRTGFVAFFVKNLVPVTIGNILGGSFLMAGMQHLAFGGRDKTSATTTPVNKR 328          
The following BLAST results are available for this feature:
BLAST of NO02G02160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30444.11.600e-12775.53formate nitrite transporter [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02160NO02G02160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02160.1NO02G02160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02160.1.cds1NO02G02160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02160.1.cds2NO02G02160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02160.1.cds3NO02G02160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02160.1 ID=NO02G02160.1|Name=NO02G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1834bp
AAACCTAAAAAGTATCCGCGATGATGGATGATGGTGGTCGTCACGACAGC
ACGTCGTCGCAGCTCCCTTTTGGTTTTGGCCCTCCTGTTGTGATTGAGGC
AACTCAATGTGCTTGGCTTTTTGTCAACTGACTGAAAGCTGGCAATCTCA
CGCTCCATTATATCCATATATATACGCAGGCCGCCCTTTCTGGTGCATCT
GCCAAGTCAAGTGGTCCATCAATTCTTCGCATCTAATACCGCGCCCCACA
GAGCCCATCTCGAACAACAATCATGAAGTTCACGACCTGCCTCGCGCTCG
CCATGTGCATGGCATCAGCCTCCACCTCGGCTTCCTTCTTTCCCAGCACA
AACACAAAAAAGCAAACAATGAGCGTACCCCCCCCGGCTCGCCGTCTCCT
GACCAAGGTCCGCGGTGGGAGCGACTCGTCCATTGTCGTCCAGCCCCTCA
TGAAAGCCCCCGCTGAAGCCTACAAGACCGTCCTAACCCTTGGTATCAAG
AAAGCCAACCAACCGGCCAGTAAGATATTGTTGCTCGGCCTCGTCGCGGG
AATGCAGGTCGGAATCGGCGCTGCCATGGCCGTGGCGACTCTGGGTGGGG
TGCCTCTGCTCCAAGAGCAAAACCCAGCGCTCGCCAAAGTCCTGTTTGGT
ATTGTCGGCCTCCCGTGCTCCCTCCTCCTGGTTGTAGCCACAGGCTCGGA
GCTGTTTACCGGGAATACCGCGATGGTCGGCACAGCATTTTTCGAAGGTA
AAGTCTCGCGACAGCAGCTGGCCAAATCGTGGGGATGCTCTTACCTGGGT
AACCTGTTGGGGGCGTCTTTCCTCGCCATCCTATGCAATTATGCCGGAGT
CTTTTCGCAAGCTGCGGGCACCTTTACGGCGGTGGCAGATGCAAAGGCTT
CCCTGCCGTTTGGTGTGGCGGTTGCGAGGGGCATTGTGTGTAACTGGCTG
GTCTGCAGCGCCGTGTGGTGCTCCACTGCCGCGGCTGATTTGGTGTCTAA
GGCGGTGGCGATTCTGATGATCATCACGATTTTTGCGGCGCTCGGTTTTG
AGCATTCGATTGCCAATATGTTTGTGGGACCATTTGGGGCGTTACAGAAG
AGCTCGCGCACGAGCTTTCTCAAGTTCTTCTTCAAGAACCTGGTGCCCGT
CACGATTGGCAACATCATCGGCGGCTCGTTATTGATGGCAGGAACGCAGC
ACCTTGCTTTCGGGGGCAAGAACATGGTGAGCCCACCCTCCTCTTCCTCG
GATAAGAAGCGGGAGTGAATCGGTGACCCTGATGGGGGGCAAACAGAAGA
AGAAAACTGCCAAGACGATAACAGCAGCACCAGTAGCAGCAGTAGCAGCG
AGCAGGGAATATCGGTTTGGGGCTCCAGGGAGGAAGGGAGTGGAGGTGAA
GAAAATGGTTGGGGCTTGGGGAGGGACACGCTGAAGCACGAAGGGGTAGT
AGAGCCCCCGCCCTTGTCACAGTTGCATTCTCCTTCGACCTCCTCATCTC
TTCCTGATTTTCAAGGAACAGCGCAATTTTAGCAACGAACGAAGGAGACG
GAGCGGAATGACAACGATGAGAGGGACCAGCAGGGGGGGCAGGGAGTGAA
TGAGGGAAGGAAGCAGATAACAAAATATAGAGGGCGCCGAGTTTTATTAA
AAATGTATTAATAGCCCCTAGATAGTGAGTGAGTAGCGGTAATCTATATG
CCTGTGGTGCTTGACGAGTGTGTGTGTACGTGTGCGTAACTCTGTGTGTC
TCTGACCGAGAATTAGAAAATGAGAAAATTGCGCGAGCGTCTGGGTGTTT
TTAGTGTGCGTGTGTGTGTTGTGCCTGTCGATGA
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protein sequence of NO02G02160.1

>NO02G02160.1-protein ID=NO02G02160.1-protein|Name=NO02G02160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MKFTTCLALAMCMASASTSASFFPSTNTKKQTMSVPPPARRLLTKVRGGS
DSSIVVQPLMKAPAEAYKTVLTLGIKKANQPASKILLLGLVAGMQVGIGA
AMAVATLGGVPLLQEQNPALAKVLFGIVGLPCSLLLVVATGSELFTGNTA
MVGTAFFEGKVSRQQLAKSWGCSYLGNLLGASFLAILCNYAGVFSQAAGT
FTAVADAKASLPFGVAVARGIVCNWLVCSAVWCSTAAADLVSKAVAILMI
ITIFAALGFEHSIANMFVGPFGALQKSSRTSFLKFFFKNLVPVTIGNIIG
GSLLMAGTQHLAFGGKNMVSPPSSSSDKKRE*
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mRNA from alignment at chr2:608238..610287+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02160.1 ID=NO02G02160.1|Name=NO02G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2050bp|location=Sequence derived from alignment at chr2:608238..610287+ (Nannochloropsis oceanica)
AAACCTAAAAAGTATCCGCGATGATGGATGATGGTGGTCGTCACGACAGC ACGTCGTCGCAGCTCCCTTTTGGTTTTGGCCCTCCTGTTGTGATTGAGGC AACTCAATGTGCTTGGCTTTTTGTCAACTGACTGAAAGCTGGCAATCTCA CGCTCCATTATATCCATATATATACGCAGGCCGCCCTTTCTGGTGCATCT GCCAAGTCAAGTGGTCCATCAATTCTTCGCATCTAATACCGCGCCCCACA GAGCCCATCTCGAACAACAATCATGAAGTTCACGACCTGCCTCGGTACGT ATGCCGACCTTTAAGTTAGGGCATGTATCTGACATATTTGCCTTAATCTC TGGGCTCGGACGAAGCTCACTCCATCCCACAATCCTCCCGACAGCGCTCG CCATGTGCATGGCATCAGCCTCCACCTCGGCTTCCTTCTTTCCCAGCACA AACACAAAAAAGCAAACAATGAGCGTACCCCCCCCGGCTCGCCGTCTCCT GACCAAGGTCCGCGGTGGGAGCGACTCGTCCATTGTCGTCCAGCCCCTCA TGAAAGCCCCCGCTGAAGCCTACAAGACCGTCCTAACCCTTGGTATCAAG AAAGCCAACCAACCGGCCAGTAAGATATTGTTGCTCGGCCTCGTCGCGGG AATGCAGGTCGGAATCGGCGCTGCCATGGCCGTGGCGACTCTGGGTGGGG TGCCTCTGCTCCAAGAGCAAAACCCAGCGCTCGCCAAAGTCCTGTTTGGT ATTGTCGGCCTCCCGTGCTCCCTCCTCCTGGTTGTAGCCACAGGCTCGGA GCTGTTTACCGGGAATACCGCGATGGTCGGCACAGCATTTTTCGAAGGTA AAGTCTCGCGACAGCAGCTGGCCAAATCGTGGGGATGCTCTTACCTGGGT AACCTGTTGGGGGCGTCTTTCCTCGCCATCCTATGCAATTATGCCGGAGT CTTTTCGCAAGCTGCGGGCACCTTTACGGCGGTGGCAGATGCAAAGGCTT CCCTGCCGTTTGGTGTGGCGGTTGCGAGGGGCATTGTGTGTAACTGGCTG GTCTGCAGCGCCGTGTGGTGCTCCACTGCCGCGGCTGATTTGGTGTCTAA GGCGGTGGCGATTCTGATGATCATCACGATTTTTGCGGCGCTCGGTTTTG AGCATTCGATTGCCAATATGTTTGTGGGACCATTTGGGGCGTTACAGAAG AGCTCGCGCACGAGCTTTCTCAAGTTCTTCTTCAAGAACCTGGTGAGTAT TTATTCGCTTTCTAATTATGTCCCTCGATCTACTTACCTATTCAACTTCC GTTTCCCTCCCTTTCTCCCGCCGCGCCTACCTTTCCCTCCACCTTTTTTA CCTCATAGGTGCCCGTCACGATTGGCAACATCATCGGCGGCTCGTTATTG ATGGCAGGAACGCAGCACCTTGCTTTCGGGGGCAAGAACATGGTGAGCCC ACCCTCCTCTTCCTCGGATAAGAAGCGGGAGTGAATCGGTGACCCTGATG GGGGGCAAACAGAAGAAGAAAACTGCCAAGACGATAACAGCAGCACCAGT AGCAGCAGTAGCAGCGAGCAGGGAATATCGGTTTGGGGCTCCAGGGAGGA AGGGAGTGGAGGTGAAGAAAATGGTTGGGGCTTGGGGAGGGACACGCTGA AGCACGAAGGGGTAGTAGAGCCCCCGCCCTTGTCACAGTTGCATTCTCCT TCGACCTCCTCATCTCTTCCTGATTTTCAAGGAACAGCGCAATTTTAGCA ACGAACGAAGGAGACGGAGCGGAATGACAACGATGAGAGGGACCAGCAGG GGGGGCAGGGAGTGAATGAGGGAAGGAAGCAGATAACAAAATATAGAGGG CGCCGAGTTTTATTAAAAATGTATTAATAGCCCCTAGATAGTGAGTGAGT AGCGGTAATCTATATGCCTGTGGTGCTTGACGAGTGTGTGTGTACGTGTG CGTAACTCTGTGTGTCTCTGACCGAGAATTAGAAAATGAGAAAATTGCGC GAGCGTCTGGGTGTTTTTAGTGTGCGTGTGTGTGTTGTGCCTGTCGATGA
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Coding sequence (CDS) from alignment at chr2:608238..610287+

>NO02G02160.1 ID=NO02G02160.1|Name=NO02G02160.1|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at chr2:608238..610287+ (Nannochloropsis oceanica)
ATGAAGTTCACGACCTGCCTCGCGCTCGCCATGTGCATGGCATCAGCCTC
CACCTCGGCTTCCTTCTTTCCCAGCACAAACACAAAAAAGCAAACAATGA
GCGTACCCCCCCCGGCTCGCCGTCTCCTGACCAAGGTCCGCGGTGGGAGC
GACTCGTCCATTGTCGTCCAGCCCCTCATGAAAGCCCCCGCTGAAGCCTA
CAAGACCGTCCTAACCCTTGGTATCAAGAAAGCCAACCAACCGGCCAGTA
AGATATTGTTGCTCGGCCTCGTCGCGGGAATGCAGGTCGGAATCGGCGCT
GCCATGGCCGTGGCGACTCTGGGTGGGGTGCCTCTGCTCCAAGAGCAAAA
CCCAGCGCTCGCCAAAGTCCTGTTTGGTATTGTCGGCCTCCCGTGCTCCC
TCCTCCTGGTTGTAGCCACAGGCTCGGAGCTGTTTACCGGGAATACCGCG
ATGGTCGGCACAGCATTTTTCGAAGGTAAAGTCTCGCGACAGCAGCTGGC
CAAATCGTGGGGATGCTCTTACCTGGGTAACCTGTTGGGGGCGTCTTTCC
TCGCCATCCTATGCAATTATGCCGGAGTCTTTTCGCAAGCTGCGGGCACC
TTTACGGCGGTGGCAGATGCAAAGGCTTCCCTGCCGTTTGGTGTGGCGGT
TGCGAGGGGCATTGTGTGTAACTGGCTGGTCTGCAGCGCCGTGTGGTGCT
CCACTGCCGCGGCTGATTTGGTGTCTAAGGCGGTGGCGATTCTGATGATC
ATCACGATTTTTGCGGCGCTCGGTTTTGAGCATTCGATTGCCAATATGTT
TGTGGGACCATTTGGGGCGTTACAGAAGAGCTCGCGCACGAGCTTTCTCA
AGTTCTTCTTCAAGAACCTGGTGCCCGTCACGATTGGCAACATCATCGGC
GGCTCGTTATTGATGGCAGGAACGCAGCACCTTGCTTTCGGGGGCAAGAA
CATGGTGAGCCCACCCTCCTCTTCCTCGGATAAGAAGCGGGAGTGA
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Synonyms
Publications