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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:608238..610287 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02160.1 vs.
Match: EWM30444.1 (formate nitrite transporter [Nannochloropsis gaditana]) HSP 1 Score: 465.3 bits (1196), Expect = 1.600e-127 Identity = 250/331 (75.53%), Postives = 287/331 (86.71%), Query Frame = 0
Query: 1 MKFTTCLALAMCMASASTSASFFPSTNTKKQTMSVPPPARRLLTKVRGGSDS--SIVVQPLMKAPAEAYKTVLTLGIKKANQPASKILLLGLVAGMQVGIGAAMAVATLGGVPLLQEQNPALAKVLFGIVGLPCSLLLVVATGSELFTGNTAMVGTAFFEGKVSRQQLAKSWGCSYLGNLLGASFLAILCNYAGVFSQAAGTFTAVADAKASLPFGVAVARGIVCNWLVCSAVWCSTAAADLVSKAVAILMIITIFAALGFEHSIANMFVGPFGALQKSSRTSFLKFFFKNLVPVTIGNIIGGSLLMAGTQHLAFGGKNMVSPPSSSSDKK 330
MK +T L M MA+AS S S F S++ +T+S P RL++KVRGG+DS SIV QPLMKAPA+AYKTVL LG+KKA QPASKILLLG++AG+QVGIGAAMAVATLGGVPL+QEQNPALAK+LFGI GLPCSLL+V+ATG+ELFTGNTA+VGTAFFEGK+S QQL KSW CSY GNL+G LA+LCNYAGVFSQAAGTFTAVADAKA+LPFGVAVARGI+CNWLVC+AVW STAAADLVSKAVA LMIITIFA+LGFEHSIANMFVGPFGA+QK+SRT F+ FF KNLVPVTIGNI+GGS LMAG QHLAFGG++ S ++ +K+
Sbjct: 1 MKISTLCVLTMGMAAASASVSSFSSSSKPAKTLSTVP---RLVSKVRGGNDSPASIVPQPLMKAPADAYKTVLALGVKKACQPASKILLLGVMAGLQVGIGAAMAVATLGGVPLMQEQNPALAKLLFGIAGLPCSLLMVMATGAELFTGNTAVVGTAFFEGKISLQQLLKSWSCSYAGNLIGGGLLALLCNYAGVFSQAAGTFTAVADAKAALPFGVAVARGIICNWLVCTAVWVSTAAADLVSKAVATLMIITIFASLGFEHSIANMFVGPFGAMQKTSRTGFVAFFVKNLVPVTIGNILGGSFLMAGMQHLAFGGRDKTSATTTPVNKR 328
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02160.1 ID=NO02G02160.1|Name=NO02G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1834bp AAACCTAAAAAGTATCCGCGATGATGGATGATGGTGGTCGTCACGACAGC ACGTCGTCGCAGCTCCCTTTTGGTTTTGGCCCTCCTGTTGTGATTGAGGC AACTCAATGTGCTTGGCTTTTTGTCAACTGACTGAAAGCTGGCAATCTCA CGCTCCATTATATCCATATATATACGCAGGCCGCCCTTTCTGGTGCATCT GCCAAGTCAAGTGGTCCATCAATTCTTCGCATCTAATACCGCGCCCCACA GAGCCCATCTCGAACAACAATCATGAAGTTCACGACCTGCCTCGCGCTCG CCATGTGCATGGCATCAGCCTCCACCTCGGCTTCCTTCTTTCCCAGCACA AACACAAAAAAGCAAACAATGAGCGTACCCCCCCCGGCTCGCCGTCTCCT GACCAAGGTCCGCGGTGGGAGCGACTCGTCCATTGTCGTCCAGCCCCTCA TGAAAGCCCCCGCTGAAGCCTACAAGACCGTCCTAACCCTTGGTATCAAG AAAGCCAACCAACCGGCCAGTAAGATATTGTTGCTCGGCCTCGTCGCGGG AATGCAGGTCGGAATCGGCGCTGCCATGGCCGTGGCGACTCTGGGTGGGG TGCCTCTGCTCCAAGAGCAAAACCCAGCGCTCGCCAAAGTCCTGTTTGGT ATTGTCGGCCTCCCGTGCTCCCTCCTCCTGGTTGTAGCCACAGGCTCGGA GCTGTTTACCGGGAATACCGCGATGGTCGGCACAGCATTTTTCGAAGGTA AAGTCTCGCGACAGCAGCTGGCCAAATCGTGGGGATGCTCTTACCTGGGT AACCTGTTGGGGGCGTCTTTCCTCGCCATCCTATGCAATTATGCCGGAGT CTTTTCGCAAGCTGCGGGCACCTTTACGGCGGTGGCAGATGCAAAGGCTT CCCTGCCGTTTGGTGTGGCGGTTGCGAGGGGCATTGTGTGTAACTGGCTG GTCTGCAGCGCCGTGTGGTGCTCCACTGCCGCGGCTGATTTGGTGTCTAA GGCGGTGGCGATTCTGATGATCATCACGATTTTTGCGGCGCTCGGTTTTG AGCATTCGATTGCCAATATGTTTGTGGGACCATTTGGGGCGTTACAGAAG AGCTCGCGCACGAGCTTTCTCAAGTTCTTCTTCAAGAACCTGGTGCCCGT CACGATTGGCAACATCATCGGCGGCTCGTTATTGATGGCAGGAACGCAGC ACCTTGCTTTCGGGGGCAAGAACATGGTGAGCCCACCCTCCTCTTCCTCG GATAAGAAGCGGGAGTGAATCGGTGACCCTGATGGGGGGCAAACAGAAGA AGAAAACTGCCAAGACGATAACAGCAGCACCAGTAGCAGCAGTAGCAGCG AGCAGGGAATATCGGTTTGGGGCTCCAGGGAGGAAGGGAGTGGAGGTGAA GAAAATGGTTGGGGCTTGGGGAGGGACACGCTGAAGCACGAAGGGGTAGT AGAGCCCCCGCCCTTGTCACAGTTGCATTCTCCTTCGACCTCCTCATCTC TTCCTGATTTTCAAGGAACAGCGCAATTTTAGCAACGAACGAAGGAGACG GAGCGGAATGACAACGATGAGAGGGACCAGCAGGGGGGGCAGGGAGTGAA TGAGGGAAGGAAGCAGATAACAAAATATAGAGGGCGCCGAGTTTTATTAA AAATGTATTAATAGCCCCTAGATAGTGAGTGAGTAGCGGTAATCTATATG CCTGTGGTGCTTGACGAGTGTGTGTGTACGTGTGCGTAACTCTGTGTGTC TCTGACCGAGAATTAGAAAATGAGAAAATTGCGCGAGCGTCTGGGTGTTT TTAGTGTGCGTGTGTGTGTTGTGCCTGTCGATGA back to topprotein sequence of NO02G02160.1 >NO02G02160.1-protein ID=NO02G02160.1-protein|Name=NO02G02160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp MKFTTCLALAMCMASASTSASFFPSTNTKKQTMSVPPPARRLLTKVRGGS DSSIVVQPLMKAPAEAYKTVLTLGIKKANQPASKILLLGLVAGMQVGIGA AMAVATLGGVPLLQEQNPALAKVLFGIVGLPCSLLLVVATGSELFTGNTA MVGTAFFEGKVSRQQLAKSWGCSYLGNLLGASFLAILCNYAGVFSQAAGT FTAVADAKASLPFGVAVARGIVCNWLVCSAVWCSTAAADLVSKAVAILMI ITIFAALGFEHSIANMFVGPFGALQKSSRTSFLKFFFKNLVPVTIGNIIG GSLLMAGTQHLAFGGKNMVSPPSSSSDKKRE* back to topmRNA from alignment at chr2:608238..610287+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02160.1 ID=NO02G02160.1|Name=NO02G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2050bp|location=Sequence derived from alignment at chr2:608238..610287+ (Nannochloropsis oceanica) AAACCTAAAAAGTATCCGCGATGATGGATGATGGTGGTCGTCACGACAGC
ACGTCGTCGCAGCTCCCTTTTGGTTTTGGCCCTCCTGTTGTGATTGAGGC
AACTCAATGTGCTTGGCTTTTTGTCAACTGACTGAAAGCTGGCAATCTCA
CGCTCCATTATATCCATATATATACGCAGGCCGCCCTTTCTGGTGCATCT
GCCAAGTCAAGTGGTCCATCAATTCTTCGCATCTAATACCGCGCCCCACA
GAGCCCATCTCGAACAACAATCATGAAGTTCACGACCTGCCTCGGTACGT
ATGCCGACCTTTAAGTTAGGGCATGTATCTGACATATTTGCCTTAATCTC
TGGGCTCGGACGAAGCTCACTCCATCCCACAATCCTCCCGACAGCGCTCG
CCATGTGCATGGCATCAGCCTCCACCTCGGCTTCCTTCTTTCCCAGCACA
AACACAAAAAAGCAAACAATGAGCGTACCCCCCCCGGCTCGCCGTCTCCT
GACCAAGGTCCGCGGTGGGAGCGACTCGTCCATTGTCGTCCAGCCCCTCA
TGAAAGCCCCCGCTGAAGCCTACAAGACCGTCCTAACCCTTGGTATCAAG
AAAGCCAACCAACCGGCCAGTAAGATATTGTTGCTCGGCCTCGTCGCGGG
AATGCAGGTCGGAATCGGCGCTGCCATGGCCGTGGCGACTCTGGGTGGGG
TGCCTCTGCTCCAAGAGCAAAACCCAGCGCTCGCCAAAGTCCTGTTTGGT
ATTGTCGGCCTCCCGTGCTCCCTCCTCCTGGTTGTAGCCACAGGCTCGGA
GCTGTTTACCGGGAATACCGCGATGGTCGGCACAGCATTTTTCGAAGGTA
AAGTCTCGCGACAGCAGCTGGCCAAATCGTGGGGATGCTCTTACCTGGGT
AACCTGTTGGGGGCGTCTTTCCTCGCCATCCTATGCAATTATGCCGGAGT
CTTTTCGCAAGCTGCGGGCACCTTTACGGCGGTGGCAGATGCAAAGGCTT
CCCTGCCGTTTGGTGTGGCGGTTGCGAGGGGCATTGTGTGTAACTGGCTG
GTCTGCAGCGCCGTGTGGTGCTCCACTGCCGCGGCTGATTTGGTGTCTAA
GGCGGTGGCGATTCTGATGATCATCACGATTTTTGCGGCGCTCGGTTTTG
AGCATTCGATTGCCAATATGTTTGTGGGACCATTTGGGGCGTTACAGAAG
AGCTCGCGCACGAGCTTTCTCAAGTTCTTCTTCAAGAACCTGGTGAGTAT
TTATTCGCTTTCTAATTATGTCCCTCGATCTACTTACCTATTCAACTTCC
GTTTCCCTCCCTTTCTCCCGCCGCGCCTACCTTTCCCTCCACCTTTTTTA
CCTCATAGGTGCCCGTCACGATTGGCAACATCATCGGCGGCTCGTTATTG
ATGGCAGGAACGCAGCACCTTGCTTTCGGGGGCAAGAACATGGTGAGCCC
ACCCTCCTCTTCCTCGGATAAGAAGCGGGAGTGAATCGGTGACCCTGATG
GGGGGCAAACAGAAGAAGAAAACTGCCAAGACGATAACAGCAGCACCAGT
AGCAGCAGTAGCAGCGAGCAGGGAATATCGGTTTGGGGCTCCAGGGAGGA
AGGGAGTGGAGGTGAAGAAAATGGTTGGGGCTTGGGGAGGGACACGCTGA
AGCACGAAGGGGTAGTAGAGCCCCCGCCCTTGTCACAGTTGCATTCTCCT
TCGACCTCCTCATCTCTTCCTGATTTTCAAGGAACAGCGCAATTTTAGCA
ACGAACGAAGGAGACGGAGCGGAATGACAACGATGAGAGGGACCAGCAGG
GGGGGCAGGGAGTGAATGAGGGAAGGAAGCAGATAACAAAATATAGAGGG
CGCCGAGTTTTATTAAAAATGTATTAATAGCCCCTAGATAGTGAGTGAGT
AGCGGTAATCTATATGCCTGTGGTGCTTGACGAGTGTGTGTGTACGTGTG
CGTAACTCTGTGTGTCTCTGACCGAGAATTAGAAAATGAGAAAATTGCGC
GAGCGTCTGGGTGTTTTTAGTGTGCGTGTGTGTGTTGTGCCTGTCGATGA
back to topCoding sequence (CDS) from alignment at chr2:608238..610287+ >NO02G02160.1 ID=NO02G02160.1|Name=NO02G02160.1|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at chr2:608238..610287+ (Nannochloropsis oceanica) ATGAAGTTCACGACCTGCCTCGCGCTCGCCATGTGCATGGCATCAGCCTC CACCTCGGCTTCCTTCTTTCCCAGCACAAACACAAAAAAGCAAACAATGA GCGTACCCCCCCCGGCTCGCCGTCTCCTGACCAAGGTCCGCGGTGGGAGC GACTCGTCCATTGTCGTCCAGCCCCTCATGAAAGCCCCCGCTGAAGCCTA CAAGACCGTCCTAACCCTTGGTATCAAGAAAGCCAACCAACCGGCCAGTA AGATATTGTTGCTCGGCCTCGTCGCGGGAATGCAGGTCGGAATCGGCGCT GCCATGGCCGTGGCGACTCTGGGTGGGGTGCCTCTGCTCCAAGAGCAAAA CCCAGCGCTCGCCAAAGTCCTGTTTGGTATTGTCGGCCTCCCGTGCTCCC TCCTCCTGGTTGTAGCCACAGGCTCGGAGCTGTTTACCGGGAATACCGCG ATGGTCGGCACAGCATTTTTCGAAGGTAAAGTCTCGCGACAGCAGCTGGC CAAATCGTGGGGATGCTCTTACCTGGGTAACCTGTTGGGGGCGTCTTTCC TCGCCATCCTATGCAATTATGCCGGAGTCTTTTCGCAAGCTGCGGGCACC TTTACGGCGGTGGCAGATGCAAAGGCTTCCCTGCCGTTTGGTGTGGCGGT TGCGAGGGGCATTGTGTGTAACTGGCTGGTCTGCAGCGCCGTGTGGTGCT CCACTGCCGCGGCTGATTTGGTGTCTAAGGCGGTGGCGATTCTGATGATC ATCACGATTTTTGCGGCGCTCGGTTTTGAGCATTCGATTGCCAATATGTT TGTGGGACCATTTGGGGCGTTACAGAAGAGCTCGCGCACGAGCTTTCTCA AGTTCTTCTTCAAGAACCTGGTGCCCGTCACGATTGGCAACATCATCGGC GGCTCGTTATTGATGGCAGGAACGCAGCACCTTGCTTTCGGGGGCAAGAA CATGGTGAGCCCACCCTCCTCTTCCTCGGATAAGAAGCGGGAGTGA back to top
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