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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:604445..608216 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02140.1 vs.
Match: EWM30528.1 (protein of unknown function DUF399 [Nannochloropsis gaditana]) HSP 1 Score: 582.4 bits (1500), Expect = 1.100e-162 Identity = 294/374 (78.61%), Postives = 328/374 (87.70%), Query Frame = 0
Query: 56 TSYLLQAMLLLLLWHTPLALAFTLPASSYLKMALKPDSPSPLTAVSRSDLFKGVGLAGLGAAGITGAGITVKSAQAEADMVVRRPILSERIFDTKRRSFLPAEINRLMHNKALDQRVVCIGEVHNDGLQHYAEYSILQAVHKRRGAAGLTVGLEMFYRQHQPILDEYVFGKGTLASLKEDTKWDKTWGHKMAYYAKIFQYAKANGIRLCGLNVPQPVVQVVRQLGLEHIPEDLRRRLPAVVDLSNVAHREDFLATMRYFSRFHGGGSNGGGIPEEALERLYEAQTLWDEYMAESAVQVLEANAGSRMIVLAGTNHIQNRYGVPDRITRRLGGQPVFTILPVSVEFDALTSLPKIGDGESFSPKVGDWMYFIEKA 430
+S L + +LL P + + +S M+L+PDS SPL+ + R DL KG+G+AGLG AG++G G VK+AQAEA+++VRRP LSERIFDT+RRSFLPAE+NRLMHNKALDQRVVCIGEVHND QHYAEYSILQAVHKRRGA GLTVGLEMFYRQHQ ILD+YVFGKGTLASLKEDTKWDKTWGHKMA YAKIFQYAKA+GIRLCGLNVPQPVVQVVRQ+GLEHIPE+LRRRLPAVVDLSN AHREDFLATMRYF+ FH GG+ GGGIPEEALERLYEAQTLWDEYMAESA +LEA+ SRMIVLAGTNHIQNRYGVPDRI RRLGGQPVFTILPVSV+FDA+TSLP IGDGES+ ++GDW+YFIEKA
Sbjct: 18 SSGTLLLLTFILLLPGPASAFCRVHSSKAPSMSLQPDS-SPLS-IPRVDLLKGMGIAGLGVAGVSGIG-AVKAAQAEANVIVRRPFLSERIFDTRRRSFLPAEVNRLMHNKALDQRVVCIGEVHNDDAQHYAEYSILQAVHKRRGATGLTVGLEMFYRQHQAILDDYVFGKGTLASLKEDTKWDKTWGHKMASYAKIFQYAKAHGIRLCGLNVPQPVVQVVRQMGLEHIPEELRRRLPAVVDLSNTAHREDFLATMRYFASFH-GGAKGGGIPEEALERLYEAQTLWDEYMAESAAHILEADPRSRMIVLAGTNHIQNRYGVPDRIMRRLGGQPVFTILPVSVKFDAVTSLPMIGDGESYDTRLGDWVYFIEKA 387
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02140.1 ID=NO02G02140.1|Name=NO02G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=3610bp CCACCCATAAGCACATGTGTAAATCAAAGCAGAGAGGGAATCTCGAAGCA AAAGTGGCAATTTTTCCTCCGTGGTCAGAAAATTAAAAATTTCATTTATA CATTTGCCGTTTCTTTTACCTCGACTACCCTTCTATCCTTCTCTGCATCT CCTCATGGTGACTTCCCTCCCACTTTACTTTTGTTTGCTTTCCGGGCATC ATCTGCTTCCGCTTTGGCCTTGGCGGCCTTCCCCCGCTCTTCCTCGATCG CCTTCTCCAAGCACTCTTTCGCCCGATACACCTTTGACTGCAAATAAAAC GATCCCCCCTTACCCGGCTCATTCTGCATAAAGTACTTGTCAAATTGCTC GATCAATCGTGCTGGGTTTTTCATATCTGTCTTTTGCAAATTCAGGACCT TGAGGGCTTCGTCCGGGGCCATCCCTCCATAAGTCCGGGAGGCGGCCTTG GCGGCCGTGCCCCCACCTTGCTTGGCATTTTGCAAGGCCTGATGATATGC TGCCACAAATGCACGGGAAAAGACGGATGCAGACATGACGGCGATGTTGA CTAGCATCCGTACAAAAGGACCGCTCATGTTTACTTTGGGGGGGCCGGGG GTGGTGGAGAGGGAGTCGTGGGCTGGAAGGAGGGAGATGGGAGATACGAC TGGGGCTTGCCGCGGGACGATTAGGTTGTGGCGGGCACTGCTGGAAAGGT GTTCGAGACGATGCTTTCTGGCGTCCACAGCGTCAAGTCAAACTGTGTGC GGAGAATGGGGATGGGGTGGGGAGGCGAGTCAGAGGAAGGCAGGGTTGTC GATCTCATGACATGCTCCAGCAGTTGCTCGCGGCAAGTATTGCCTCACTC CTCCTGCCATGGTCACACATAACTTGTCTGTCTCAAGCATGCCAAGAACC AGAGGAGGAGAAATGCATGAGAAAAGATACAGCTCGCAATGGCCTGGGAC TGGTGGGAGCTTGATACGAATTGCTCATGATGACATATGAGACACAGACC TTCGCGCATCGTAAAGCTTCCCAAAAAAGTCCCATCACTTTCCATCCGAA GGGGCGATAAGCAGACACTGTCTGTGTGAACATGCTTGTGGACAAATCCA CCACCACCACAGTGCAGAACCACTTATAAAATTCTTGGCGCAGGTTTTTT TTTAAGCAATCCTCTCCCTTGGCTGGCAGTCTTGAAACCTTAAAACCTCT CCTGATTTTTTACGCGTGCCCGGGCCACGCGCCTTGACAAAGCAGATGCC TGACAACTTTCCCCGTCCATGTTTGACAGACTTCACCCACGCACTCACCA CTCCACCTGTAATTTTGTTGAACAAAGGCCACTGTTTCGCCCTTACAACT ACAATGGGTCTGCCAGGCTCGCAACGCCTTCGCCGCTGTCAAAAGCCTTC CACTATGCCTACCTCCTATCTGCTGCAGGCCATGCTACTGCTCCTCTTGT GGCACACACCCCTGGCATTGGCCTTCACCCTGCCTGCCTCGTCCTACCTC AAAATGGCCCTGAAGCCGGACTCCCCCTCTCCCTTGACCGCCGTCTCACG CTCGGACCTGTTCAAGGGTGTGGGCCTCGCTGGCTTGGGTGCGGCAGGAA TCACTGGGGCAGGCATTACAGTTAAGTCCGCCCAGGCTGAAGCTGACATG GTCGTGCGGCGTCCCATTTTGTCCGAACGCATCTTCGACACGAAGCGGCG CTCGTTCTTGCCGGCCGAGATTAATCGCTTAATGCACAACAAGGCTCTGG ACCAGCGGGTGGTTTGTATTGGGGAGGTTCACAATGATGGGCTCCAGCAC TACGCCGAGTACTCCATCTTGCAAGCCGTCCACAAACGCCGAGGTGCTGC GGGTTTGACCGTGGGTCTGGAGATGTTCTATCGACAACATCAGCCGATTC TGGATGAGTACGTCTTCGGGAAAGGCACGCTGGCCTCGCTGAAGGAGGAC ACGAAATGGGATAAGACCTGGGGGCACAAAATGGCGTATTATGCGAAAAT TTTTCAGTATGCAAAAGCGAATGGCATTCGTCTCTGCGGCCTTAATGTAC CTCAGCCGGTGGTACAAGTGGTGAGGCAGTTGGGTTTGGAGCACATCCCT GAGGATCTGCGACGGCGGTTGCCGGCGGTGGTGGATTTGAGCAACGTTGC CCACCGCGAGGACTTCCTGGCGACGATGCGGTACTTTTCGCGTTTCCACG GGGGGGGCAGCAACGGGGGCGGGATCCCCGAGGAGGCATTGGAGCGACTC TACGAAGCCCAAACGCTGTGGGACGAATATATGGCCGAAAGCGCCGTGCA AGTCCTGGAGGCCAATGCCGGTTCGCGGATGATCGTCTTGGCGGGAACAA ACCATATCCAGAACAGATATGGCGTGCCTGATCGCATTACCCGCCGCTTG GGAGGGCAGCCGGTGTTCACCATTTTGCCCGTATCGGTGGAGTTTGACGC GTTGACCTCCTTGCCGAAAATCGGGGATGGGGAAAGTTTCTCCCCGAAGG TGGGGGATTGGATGTACTTCATTGAGAAGGCCTGAAGGGGGGAGGGAAGG TGGCAAGGAGCGGAGGGAAGTTGAAGAAGAGAAAGGCCAAGCTCTGTCTA TGGTGTAGATATTTTGGAGGAAATCTAGAATAAGGAATAGTTTCTATTTT TGTACCAGTGGTTTGTGTCCGTGCCTAAGTGGAGAAATCATAGACCTGTT GGGAACCTGGTGAAATAATATTGCCTTGGCCGAGAGAGGGAGGGAATAAT GGAGAAGCGGGAGCGCTTCAACCTTTGAGTTTTTCCGGTTGGCTGTAATG TGACGGACAGGAGGCAGGCTGAAGGATGAAGGGGGGTGTCGAGATGGCTT ATGTGTCTCGACGGGTTAGATCAAGAGTGTGAGTGTCAAGAAGAAGGGAG GACTTAAAATTTTCGGATAGGCAGGTAATGTTATATGTATAAAAAAAAAC ATGATACGGGATGTTTTAAACAGAAATATCGCGGAAGCTCGGTAGTGTAA GCTTGAGGGAGAAGGAAGGATAGATGGACAGTGTACATGAAGGGCGTATT CTGTGAAATTATATTGACCACGCAGGAAAGAAAATGAGTCGGGCGGTGAT GGTTCGTGGAAAAAGAAGAGTAAGTGTGTCTATACCAGCCTCGAAGTCAT GTCATGACTGGGAGTTTTTCTGATTTCTGTACGACGCAACAGAGACCTTT AACCACAGCGCTCAAGGATCTGGATCCGTCGTTATGCGCTCGGCACCAAG CAATGCATGTAGCCCACACCAAATGCCCTATGCAAGGTACCAAAAGAAAG GAATTATAATCGTGCCGACGATTGTTTGCAGTTCTTGATACGAGATATGC CCTGTGAGATTACCAATTTCATGATTATATGCATGTCGGGCTCGAATGTA GATGTAATATGTACAAAAATATGCCCGAGCGCAAATTAAGGTTGCCTTGT TCGACGTAGAAATGAAAAGCGAAGGTCGCTTTACGAGTACGGAGCTTTGA CGTAGTTGAAAATGCTCCGCTTGCTGCCACCAGCCAGGAAGTTGAAAGCT TCAGAGACCCATCGATTCCGGAAAATGTTGCCATTTGACTTTTCTTGTCT CGTTGTTTAT back to topprotein sequence of NO02G02140.1 >NO02G02140.1-protein ID=NO02G02140.1-protein|Name=NO02G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp MPDNFPRPCLTDFTHALTTPPVILLNKGHCFALTTTMGLPGSQRLRRCQK PSTMPTSYLLQAMLLLLLWHTPLALAFTLPASSYLKMALKPDSPSPLTAV SRSDLFKGVGLAGLGAAGITGAGITVKSAQAEADMVVRRPILSERIFDTK RRSFLPAEINRLMHNKALDQRVVCIGEVHNDGLQHYAEYSILQAVHKRRG AAGLTVGLEMFYRQHQPILDEYVFGKGTLASLKEDTKWDKTWGHKMAYYA KIFQYAKANGIRLCGLNVPQPVVQVVRQLGLEHIPEDLRRRLPAVVDLSN VAHREDFLATMRYFSRFHGGGSNGGGIPEEALERLYEAQTLWDEYMAESA VQVLEANAGSRMIVLAGTNHIQNRYGVPDRITRRLGGQPVFTILPVSVEF DALTSLPKIGDGESFSPKVGDWMYFIEKA* back to topmRNA from alignment at chr2:604445..608216+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02140.1 ID=NO02G02140.1|Name=NO02G02140.1|organism=Nannochloropsis oceanica|type=mRNA|length=3772bp|location=Sequence derived from alignment at chr2:604445..608216+ (Nannochloropsis oceanica) CCACCCATAAGCACATGTGTAAATCAAAGCAGAGAGGGAATCTCGAAGCA
AAAGTGGCAATTTTTCCTCCGTGGTCAGAAAATTAAAAATTTCATTTATA
CATTTGCCGTTTCTTTTACCTCGACTACCCTTCTATCCTTCTCTGCATCT
CCTCATGGTGACTTCCCTCCCACTTTACTTTTGTTTGCTTTCCGGGCATC
ATCTGCTTCCGCTTTGGCCTTGGCGGCCTTCCCCCGCTCTTCCTCGATCG
CCTTCTCCAAGCACTCTTTCGCCCGATACACCTTTGACTGCAAATAAAAC
GATCCCCCCTTACCCGGCTCATTCTGCATAAAGTACTTGTCAAATTGCTC
GATCAATCGTGCTGGGTTTTTCATATCTGTCTTTTGCAAATTCAGGACCT
TGAGGGCTTCGTCCGGGGCCATCCCTCCATAAGTCCGGGAGGCGGCCTTG
GCGGCCGTGCCCCCACCTTGCTTGGCATTTTGCAAGGCCTGATGATATGC
TGCCACAAATGCACGGGAAAAGACGGATGCAGACATGACGGCGATGTTGA
CTAGCATCCGTACAAAAGGACCGCTCATGTTTACTTTGGGGGGGCCGGGG
GTGGTGGAGAGGGAGTCGTGGGCTGGAAGGAGGGAGATGGGAGATACGAC
TGGGGCTTGCCGCGGGACGATTAGGTTGTGGCGGGCACTGCTGGAAAGGT
GTTCGAGACGATGCTTTCTGGCGTCCACAGCGTCAAGTCAAACTGTGTGC
GGAGAATGGGGATGGGGTGGGGAGGCGAGTCAGAGGAAGGCAGGGTTGTC
GATCTCATGACATGCTCCAGCAGTTGCTCGCGGCAAGTATTGCCTCACTC
CTCCTGCCATGGTCACACATAACTTGTCTGTCTCAAGCATGCCAAGAACC
AGAGGAGGAGAAATGCATGAGAAAAGATACAGCTCGCAATGGCCTGGGAC
TGGTGGGAGCTTGATACGAATTGCTCATGATGACATATGAGACACAGACC
TTCGCGCATCGTAAAGCTTCCCAAAAAAGTCCCATCACTTTCCATCCGAA
GGGGCGATAAGCAGACACTGTCTGTGTGAACATGCTTGTGGACAAATCCA
CCACCACCACAGTGCAGAACCACTTATAAAATTCTTGGCGCAGGTTTTTT
TTTAAGCAATCCTCTCCCTTGGCTGGCAGTCTTGAAACCTTAAAACCTCT
CCTGATTTTTTACGCGTGCCCGGGCCACGCGCCTTGACAAAGCAGATGCC
TGACAACTTTCCCCGTCCATGTTTGACAGACTTCACCCACGCACTCACCA
CTCCACCTGTAATTTTGTTGAACAAAGGCCACTGTTTCGCCCTTACAACT
ACAATGGGTCTGCCAGGCTCGCAACGCCTTCGCCGCTGTCAAAAGCCTTC
CACTATGCCTACCTCCTATCTGCTGCAGGCCATGCTACTGCTCCTCTTGT
GGCACACACCCCTGGCATTGGCCTTCACCCTGCCTGCCTCGTCCTACCTC
AAAATGGCCCTGAAGCCGGACTCCCCCTCTCCCTTGACCGCCGTCTCACG
CTCGGACCTGTTCAAGGGTGTGGGCCTCGCTGGCTTGGGTGCGGCAGGAA
TCACTGGGGCAGGCATTACAGTTAAGTCCGCCCAGGCTGAAGCTGACATG
GTCGTGCGGCGTCCCATTTTGTCCGAACGCATCTTCGACACGAAGCGGCG
CTCGTTCTTGCCGGCCGAGATTAATCGCTTAATGCACAACAAGGCTCTGG
ACCAGCGGGTGGTTTGTATTGGGGAGGTTCACAATGATGGGCTCCAGCAC
TACGCCGAGTACTCCATCTTGCAAGCCGTCCACAAACGCCGAGGTGCTGC
GGGTTTGACCGTGGGTCTGGAGATGTTCTATCGACAACATCAGCCGATTC
TGGATGAGTACGTCTTCGGGAAAGGCACGCTGGCCTCGCTGAAGGAGGAC
ACGAAATGGGATAAGACCTGGGGGCACAAAATGGCGTATTATGCGAAAAT
TTTTCAGTATGCAAAAGCGAATGGCATTCGTCTCTGCGGCCTTAATGTAC
CTCAGCCGGTGGTACAAGTGGTGAGGCAGTTGGGTTTGGAGCACATCCCT
GAGGATCTGCGACGGCGGTTGCCGGCGGTGGTGGATTTGAGGTACATAAT
GGAGGGAGGAGAGAGAGAGGGAATGCATTAGGAAAGGATTGGAGGGTTGA
ATCGTGTGTCCCATGCTATTGTCTTACTACTCCCAGCGAGCCCAATCATT
TCACCCGGCCCTCCCTTCATCTCATTCATACCCACCCACCCACACTCACA
CAGCAACGTTGCCCACCGCGAGGACTTCCTGGCGACGATGCGGTACTTTT
CGCGTTTCCACGGGGGGGGCAGCAACGGGGGCGGGATCCCCGAGGAGGCA
TTGGAGCGACTCTACGAAGCCCAAACGCTGTGGGACGAATATATGGCCGA
AAGCGCCGTGCAAGTCCTGGAGGCCAATGCCGGTTCGCGGATGATCGTCT
TGGCGGGAACAAACCATATCCAGAACAGATATGGCGTGCCTGATCGCATT
ACCCGCCGCTTGGGAGGGCAGCCGGTGTTCACCATTTTGCCCGTATCGGT
GGAGTTTGACGCGTTGACCTCCTTGCCGAAAATCGGGGATGGGGAAAGTT
TCTCCCCGAAGGTGGGGGATTGGATGTACTTCATTGAGAAGGCCTGAAGG
GGGGAGGGAAGGTGGCAAGGAGCGGAGGGAAGTTGAAGAAGAGAAAGGCC
AAGCTCTGTCTATGGTGTAGATATTTTGGAGGAAATCTAGAATAAGGAAT
AGTTTCTATTTTTGTACCAGTGGTTTGTGTCCGTGCCTAAGTGGAGAAAT
CATAGACCTGTTGGGAACCTGGTGAAATAATATTGCCTTGGCCGAGAGAG
GGAGGGAATAATGGAGAAGCGGGAGCGCTTCAACCTTTGAGTTTTTCCGG
TTGGCTGTAATGTGACGGACAGGAGGCAGGCTGAAGGATGAAGGGGGGTG
TCGAGATGGCTTATGTGTCTCGACGGGTTAGATCAAGAGTGTGAGTGTCA
AGAAGAAGGGAGGACTTAAAATTTTCGGATAGGCAGGTAATGTTATATGT
ATAAAAAAAAACATGATACGGGATGTTTTAAACAGAAATATCGCGGAAGC
TCGGTAGTGTAAGCTTGAGGGAGAAGGAAGGATAGATGGACAGTGTACAT
GAAGGGCGTATTCTGTGAAATTATATTGACCACGCAGGAAAGAAAATGAG
TCGGGCGGTGATGGTTCGTGGAAAAAGAAGAGTAAGTGTGTCTATACCAG
CCTCGAAGTCATGTCATGACTGGGAGTTTTTCTGATTTCTGTACGACGCA
ACAGAGACCTTTAACCACAGCGCTCAAGGATCTGGATCCGTCGTTATGCG
CTCGGCACCAAGCAATGCATGTAGCCCACACCAAATGCCCTATGCAAGGT
ACCAAAAGAAAGGAATTATAATCGTGCCGACGATTGTTTGCAGTTCTTGA
TACGAGATATGCCCTGTGAGATTACCAATTTCATGATTATATGCATGTCG
GGCTCGAATGTAGATGTAATATGTACAAAAATATGCCCGAGCGCAAATTA
AGGTTGCCTTGTTCGACGTAGAAATGAAAAGCGAAGGTCGCTTTACGAGT
ACGGAGCTTTGACGTAGTTGAAAATGCTCCGCTTGCTGCCACCAGCCAGG
AAGTTGAAAGCTTCAGAGACCCATCGATTCCGGAAAATGTTGCCATTTGA
CTTTTCTTGTCTCGTTGTTTAT back to topCoding sequence (CDS) from alignment at chr2:604445..608216+ >NO02G02140.1 ID=NO02G02140.1|Name=NO02G02140.1|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at chr2:604445..608216+ (Nannochloropsis oceanica) ATGCCTGACAACTTTCCCCGTCCATGTTTGACAGACTTCACCCACGCACT CACCACTCCACCTGTAATTTTGTTGAACAAAGGCCACTGTTTCGCCCTTA CAACTACAATGGGTCTGCCAGGCTCGCAACGCCTTCGCCGCTGTCAAAAG CCTTCCACTATGCCTACCTCCTATCTGCTGCAGGCCATGCTACTGCTCCT CTTGTGGCACACACCCCTGGCATTGGCCTTCACCCTGCCTGCCTCGTCCT ACCTCAAAATGGCCCTGAAGCCGGACTCCCCCTCTCCCTTGACCGCCGTC TCACGCTCGGACCTGTTCAAGGGTGTGGGCCTCGCTGGCTTGGGTGCGGC AGGAATCACTGGGGCAGGCATTACAGTTAAGTCCGCCCAGGCTGAAGCTG ACATGGTCGTGCGGCGTCCCATTTTGTCCGAACGCATCTTCGACACGAAG CGGCGCTCGTTCTTGCCGGCCGAGATTAATCGCTTAATGCACAACAAGGC TCTGGACCAGCGGGTGGTTTGTATTGGGGAGGTTCACAATGATGGGCTCC AGCACTACGCCGAGTACTCCATCTTGCAAGCCGTCCACAAACGCCGAGGT GCTGCGGGTTTGACCGTGGGTCTGGAGATGTTCTATCGACAACATCAGCC GATTCTGGATGAGTACGTCTTCGGGAAAGGCACGCTGGCCTCGCTGAAGG AGGACACGAAATGGGATAAGACCTGGGGGCACAAAATGGCGTATTATGCG AAAATTTTTCAGTATGCAAAAGCGAATGGCATTCGTCTCTGCGGCCTTAA TGTACCTCAGCCGGTGGTACAAGTGGTGAGGCAGTTGGGTTTGGAGCACA TCCCTGAGGATCTGCGACGGCGGTTGCCGGCGGTGGTGGATTTGAGCAAC GTTGCCCACCGCGAGGACTTCCTGGCGACGATGCGGTACTTTTCGCGTTT CCACGGGGGGGGCAGCAACGGGGGCGGGATCCCCGAGGAGGCATTGGAGC GACTCTACGAAGCCCAAACGCTGTGGGACGAATATATGGCCGAAAGCGCC GTGCAAGTCCTGGAGGCCAATGCCGGTTCGCGGATGATCGTCTTGGCGGG AACAAACCATATCCAGAACAGATATGGCGTGCCTGATCGCATTACCCGCC GCTTGGGAGGGCAGCCGGTGTTCACCATTTTGCCCGTATCGGTGGAGTTT GACGCGTTGACCTCCTTGCCGAAAATCGGGGATGGGGAAAGTTTCTCCCC GAAGGTGGGGGATTGGATGTACTTCATTGAGAAGGCCTGA back to top
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