NO02G02120.1, NO02G02120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02120.1
Unique NameNO02G02120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1264
Alignment locationchr2:600818..602490 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:600818..602490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02120.1 vs.
Match: EWM30525.1 (haloacid dehalogenase-like hydrolase domain containing 3 [Nannochloropsis gaditana])

HSP 1 Score: 578.6 bits (1490), Expect = 1.500e-161
Identity = 290/392 (73.98%), Postives = 329/392 (83.93%), Query Frame = 0 
Query:    1 MACTRREVGASRRRMAANGVVILACMMGVSTAFLLPSAPLSSS-----RSSSSRRCPQITFSLSSSSVTCLRASAFDNLGMPQIRPRGARDEPQEEEAV--VITGGEHEVFPTRPVPELITLNAFGLLIEPTDEVGLFCREVFMKHYDYKVRLPRPELFTQTFDLAYEARRTEFPNFGANAGISTEEWWAPIFYKTFLDLGFPKEDLDEVFVGVFEELFYESLTSEWAWEPVEDVLPMLDKLQEWRMAGGPKLGVVCDYDERLSTILENLDMLHYFDVVVNSREAGAGKPDKAPFLLAMEKAEVKDPKKVMHLGLDFDHDVVGAAKAGMDSVWVVMPAYDQLEPEQEVQQLSFTKIGDLEAVLSMYERSDPERLITTTYKNKNRQGHLRVQY 386
            MACT R+    RRR+A +G V+LA M+G+S+AF+L  A  S S     R S+ RRC        S+S T L+ASAF+NLGMP IRPRG+RD+  EEEA    + G   E  P RPVPELIT+NAFGLLIEPTDEVGLF REVFMKHYDYKVRLPRPE FT  FD AY+ARR+E+PNFGA AG+S EEWWAPIFYKTFLD+GFPKEDLDEVFVGVFEEL+YESLTSEWAWE V+DVLPM+DKLQEWRM GGPKLGV+CDYDERL TILENLD+LHYFDVVV+SRE+GAGKPD  PFLLAMEKA VKDPKKVMHLG +FDHDVVGAA AGMDS+WVVMP+YD LEPEQE +Q+ FTKIGDLEAVL+M+++SDP+RLI+TT KNKNRQGHLRVQY
Sbjct:    1 MACTERDGRRMRRRVAGSGAVLLAYMVGISSAFILSPAKFSGSSTTTTRWSNRRRC---VVPNPSTSPTSLQASAFENLGMPPIRPRGSRDQKLEEEAEESTLAGEAVEAPPVRPVPELITMNAFGLLIEPTDEVGLFFREVFMKHYDYKVRLPRPERFTVAFDKAYDARRSEYPNFGAKAGMSAEEWWAPIFYKTFLDVGFPKEDLDEVFVGVFEELYYESLTSEWAWETVDDVLPMMDKLQEWRMQGGPKLGVICDYDERLITILENLDILHYFDVVVSSRESGAGKPDPRPFLLAMEKAGVKDPKKVMHLGRNFDHDVVGAAAAGMDSMWVVMPSYDYLEPEQEARQVEFTKIGDLEAVLTMFDKSDPDRLISTTDKNKNRQGHLRVQY 389
The following BLAST results are available for this feature:
BLAST of NO02G02120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30525.11.500e-16173.98haloacid dehalogenase-like hydrolase domain contai... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02120NO02G02120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02120.1NO02G02120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02120.1.cds1NO02G02120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02120.1.cds2NO02G02120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02120.1 ID=NO02G02120.1|Name=NO02G02120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1264bp
ACAGGCAGGCCTTGGGCAGGAGCTTTCCAAGGACTCGCGCTGCTTGTATC
ATCAGCTCACCAACGGTTACTGCCACACTTTGCTGCCACCCACTCATGGC
GTGCACCCGAAGGGAGGTCGGCGCCTCAAGAAGACGAATGGCTGCCAATG
GTGTCGTGATCTTGGCATGTATGATGGGCGTGAGTACAGCCTTCCTCCTC
CCCTCTGCCCCTCTCTCCAGCAGCCGCAGCAGCAGCAGCAGAAGATGTCC
ACAGATCACCTTCTCCCTCTCCTCCTCCTCCGTCACCTGTTTGCGTGCCT
CAGCCTTTGACAATCTAGGCATGCCCCAAATCAGACCACGCGGCGCCCGC
GACGAACCCCAAGAAGAGGAAGCCGTTGTCATCACCGGAGGGGAACATGA
GGTCTTTCCCACCCGGCCCGTCCCTGAGCTGATAACCCTCAACGCCTTTG
GCCTCTTAATCGAGCCGACGGACGAAGTGGGATTGTTCTGCAGGGAGGTG
TTCATGAAGCATTATGATTACAAGGTGCGTCTACCGCGGCCTGAGCTGTT
CACGCAGACTTTCGATTTGGCTTATGAAGCCCGCCGGACCGAGTTTCCCA
ATTTTGGCGCGAATGCAGGGATATCGACGGAGGAGTGGTGGGCACCCATT
TTTTACAAGACTTTCTTGGACCTGGGATTCCCAAAGGAGGATTTGGATGA
AGTCTTCGTGGGTGTATTTGAAGAGTTGTTTTATGAATCGTTGACTAGTG
AGTGGGCGTGGGAACCAGTAGAGGACGTGTTGCCCATGTTGGACAAGTTG
CAGGAGTGGCGCATGGCAGGTGGGCCGAAGTTAGGGGTGGTGTGTGATTA
CGATGAGCGTTTGTCGACAATATTGGAGAATCTTGACATGCTACACTACT
TCGATGTGGTTGTCAATTCTAGGGAGGCGGGGGCAGGGAAGCCGGACAAG
GCACCGTTCCTGTTGGCGATGGAGAAGGCGGAGGTAAAGGATCCGAAGAA
AGTGATGCATTTGGGGTTGGATTTTGATCACGATGTGGTAGGGGCGGCCA
AGGCGGGAATGGATAGTGTTTGGGTCGTTATGCCGGCTTATGACCAGTTG
GAGCCAGAGCAGGAGGTGCAACAGCTGTCTTTCACCAAGATCGGGGATTT
GGAAGCGGTGTTGTCGATGTATGAAAGGAGTGACCCGGAGAGATTGATTA
CCACGACGTACAAAAATAAGAATAGGCAAGGGCATTTGCGGGTGCAGTAT
TAGGAGGGGAGGAG
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protein sequence of NO02G02120.1

>NO02G02120.1-protein ID=NO02G02120.1-protein|Name=NO02G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MACTRREVGASRRRMAANGVVILACMMGVSTAFLLPSAPLSSSRSSSSRR
CPQITFSLSSSSVTCLRASAFDNLGMPQIRPRGARDEPQEEEAVVITGGE
HEVFPTRPVPELITLNAFGLLIEPTDEVGLFCREVFMKHYDYKVRLPRPE
LFTQTFDLAYEARRTEFPNFGANAGISTEEWWAPIFYKTFLDLGFPKEDL
DEVFVGVFEELFYESLTSEWAWEPVEDVLPMLDKLQEWRMAGGPKLGVVC
DYDERLSTILENLDMLHYFDVVVNSREAGAGKPDKAPFLLAMEKAEVKDP
KKVMHLGLDFDHDVVGAAKAGMDSVWVVMPAYDQLEPEQEVQQLSFTKIG
DLEAVLSMYERSDPERLITTTYKNKNRQGHLRVQY*
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mRNA from alignment at chr2:600818..602490-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02120.1 ID=NO02G02120.1|Name=NO02G02120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1673bp|location=Sequence derived from alignment at chr2:600818..602490- (Nannochloropsis oceanica)
ACAGGCAGGCCTTGGGCAGGAGCTTTCCAAGGACTCGCGCTGCTTGTATC
ATCAGCTCACCAACGGTTACTGCCACACTTTGCTGCCACCCACTCATGGC
GTGCACCCGAAGGGAGGTCGGCGCCTCAAGAAGACGAATGGCTGCCAATG
GTGTCGTGATCTTGGCATGTATGATGGTACGTTGGTTGAGTGTATTTTGG
GTGGGTGTTGGAGTCATGAGATAGGGGACGGAGAGGCCGTCTCAAGGAAA
AGAGGCGCTGCCTCGAGGTTTGCCGATTGCCGAGGGTAGGTAATACTTGC
ACTCCTGATGAGAGCAATGGGGTACATCTGGACATCTTCTGGAGCAGCGT
AGGGTGATTGCGAAGTATACAGGTGTCTTTGCATGTTTTGTTTGGCAGGT
GTCGAACGGTGTACTTGACAGGAGGACGGAAGTAAAGGAGACAGGCAAAC
AGGCCCCATATTTCAATTAGAGGGGCCGTCCTCGTGAGAATTTCGACCTT
ACTGAGAGGAGGTGGTTGTAAGCTGTTGTCCTGCAGTCGTCCGCCACATT
CTCACACGAAATTATGCCTCCAACCAAATCCACAGGGCGTGAGTACAGCC
TTCCTCCTCCCCTCTGCCCCTCTCTCCAGCAGCCGCAGCAGCAGCAGCAG
AAGATGTCCACAGATCACCTTCTCCCTCTCCTCCTCCTCCGTCACCTGTT
TGCGTGCCTCAGCCTTTGACAATCTAGGCATGCCCCAAATCAGACCACGC
GGCGCCCGCGACGAACCCCAAGAAGAGGAAGCCGTTGTCATCACCGGAGG
GGAACATGAGGTCTTTCCCACCCGGCCCGTCCCTGAGCTGATAACCCTCA
ACGCCTTTGGCCTCTTAATCGAGCCGACGGACGAAGTGGGATTGTTCTGC
AGGGAGGTGTTCATGAAGCATTATGATTACAAGGTGCGTCTACCGCGGCC
TGAGCTGTTCACGCAGACTTTCGATTTGGCTTATGAAGCCCGCCGGACCG
AGTTTCCCAATTTTGGCGCGAATGCAGGGATATCGACGGAGGAGTGGTGG
GCACCCATTTTTTACAAGACTTTCTTGGACCTGGGATTCCCAAAGGAGGA
TTTGGATGAAGTCTTCGTGGGTGTATTTGAAGAGTTGTTTTATGAATCGT
TGACTAGTGAGTGGGCGTGGGAACCAGTAGAGGACGTGTTGCCCATGTTG
GACAAGTTGCAGGAGTGGCGCATGGCAGGTGGGCCGAAGTTAGGGGTGGT
GTGTGATTACGATGAGCGTTTGTCGACAATATTGGAGAATCTTGACATGC
TACACTACTTCGATGTGGTTGTCAATTCTAGGGAGGCGGGGGCAGGGAAG
CCGGACAAGGCACCGTTCCTGTTGGCGATGGAGAAGGCGGAGGTAAAGGA
TCCGAAGAAAGTGATGCATTTGGGGTTGGATTTTGATCACGATGTGGTAG
GGGCGGCCAAGGCGGGAATGGATAGTGTTTGGGTCGTTATGCCGGCTTAT
GACCAGTTGGAGCCAGAGCAGGAGGTGCAACAGCTGTCTTTCACCAAGAT
CGGGGATTTGGAAGCGGTGTTGTCGATGTATGAAAGGAGTGACCCGGAGA
GATTGATTACCACGACGTACAAAAATAAGAATAGGCAAGGGCATTTGCGG
GTGCAGTATTAGGAGGGGAGGAG
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Coding sequence (CDS) from alignment at chr2:600818..602490-

>NO02G02120.1 ID=NO02G02120.1|Name=NO02G02120.1|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at chr2:600818..602490- (Nannochloropsis oceanica)
ATGGCGTGCACCCGAAGGGAGGTCGGCGCCTCAAGAAGACGAATGGCTGC
CAATGGTGTCGTGATCTTGGCATGTATGATGGGCGTGAGTACAGCCTTCC
TCCTCCCCTCTGCCCCTCTCTCCAGCAGCCGCAGCAGCAGCAGCAGAAGA
TGTCCACAGATCACCTTCTCCCTCTCCTCCTCCTCCGTCACCTGTTTGCG
TGCCTCAGCCTTTGACAATCTAGGCATGCCCCAAATCAGACCACGCGGCG
CCCGCGACGAACCCCAAGAAGAGGAAGCCGTTGTCATCACCGGAGGGGAA
CATGAGGTCTTTCCCACCCGGCCCGTCCCTGAGCTGATAACCCTCAACGC
CTTTGGCCTCTTAATCGAGCCGACGGACGAAGTGGGATTGTTCTGCAGGG
AGGTGTTCATGAAGCATTATGATTACAAGGTGCGTCTACCGCGGCCTGAG
CTGTTCACGCAGACTTTCGATTTGGCTTATGAAGCCCGCCGGACCGAGTT
TCCCAATTTTGGCGCGAATGCAGGGATATCGACGGAGGAGTGGTGGGCAC
CCATTTTTTACAAGACTTTCTTGGACCTGGGATTCCCAAAGGAGGATTTG
GATGAAGTCTTCGTGGGTGTATTTGAAGAGTTGTTTTATGAATCGTTGAC
TAGTGAGTGGGCGTGGGAACCAGTAGAGGACGTGTTGCCCATGTTGGACA
AGTTGCAGGAGTGGCGCATGGCAGGTGGGCCGAAGTTAGGGGTGGTGTGT
GATTACGATGAGCGTTTGTCGACAATATTGGAGAATCTTGACATGCTACA
CTACTTCGATGTGGTTGTCAATTCTAGGGAGGCGGGGGCAGGGAAGCCGG
ACAAGGCACCGTTCCTGTTGGCGATGGAGAAGGCGGAGGTAAAGGATCCG
AAGAAAGTGATGCATTTGGGGTTGGATTTTGATCACGATGTGGTAGGGGC
GGCCAAGGCGGGAATGGATAGTGTTTGGGTCGTTATGCCGGCTTATGACC
AGTTGGAGCCAGAGCAGGAGGTGCAACAGCTGTCTTTCACCAAGATCGGG
GATTTGGAAGCGGTGTTGTCGATGTATGAAAGGAGTGACCCGGAGAGATT
GATTACCACGACGTACAAAAATAAGAATAGGCAAGGGCATTTGCGGGTGC
AGTATTAG
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Synonyms
Publications