NO02G02100.1, NO02G02100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02100.1
Unique NameNO02G02100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length978
Alignment locationchr2:596335..597312 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:596335..597312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02100.1 vs.
Match: EWM30519.1 (nuclear migration protein nudC putative [Nannochloropsis gaditana])

HSP 1 Score: 446.0 bits (1146), Expect = 9.700e-122
Identity = 238/331 (71.90%), Postives = 275/331 (83.08%), Query Frame = 0 
Query:    2 EEGRFDPLLLNIAQQCQGIDELLEVFLSFLRRKTDFYTGATADKVEETVRYAVRKQMALVERTMQEQRQAREAEEKRRQDRLRATKLKEAEEQKA-------MKNAAATTSSSSSLVEVGSDGTFDVSSSAAAAPIEKKANSKKAEDNPDNVKEGEEAEVKEAPPGNGGTTEHYVWTQQLAEVTVNVPVPVGTRSRDLVVDIGKKRLRVGLKGQPPMVDGELHKPVKVDDSFWTVEDGREVVVNLQKENGMEWWKCVVVGDPEIDTSKVNPENSKLSDLDAETRQTVEKMMFDQRQKQMGLPTSEELKKREMLEKFMKQHPEMDFSGASIK 326
            E+GRFDPLLLNIAQQCQGID LLEVFLSFLRRKTDFYTGATA KVEET+  AVRKQM + ERT QE+ + REAEE RR++R+R  KLK    QKA       M  A ++ +S +++VE+G+DG+FDV+S+AA          +  E+ P    +GEE E +EAPPGNGG T+ Y+WTQQLAEVT+NVPVPVGTRSRDL VDIGKKRLRV LKG P +V+GEL+KP+KVDDSFWT+EDGREVV++LQKENGMEWWKC + GDPEIDTSKV+PENSKLSDLDAETRQTVEKMMFDQRQKQMGLPTS+E KKREMLEKFMKQHPEMDFSGA+IK
Sbjct:   15 EDGRFDPLLLNIAQQCQGIDGLLEVFLSFLRRKTDFYTGATASKVEETILAAVRKQMGMAERTQQEELRTREAEEARREERMRMAKLKGKANQKAKDSNAVTMDAATSSHTSQTNVVELGADGSFDVASTAAT--------KEPKEEKPKLDADGEE-EKEEAPPGNGGATDRYIWTQQLAEVTINVPVPVGTRSRDLSVDIGKKRLRVALKGGPTLVEGELYKPIKVDDSFWTLEDGREVVISLQKENGMEWWKCAIAGDPEIDTSKVSPENSKLSDLDAETRQTVEKMMFDQRQKQMGLPTSDEQKKREMLEKFMKQHPEMDFSGATIK 336
The following BLAST results are available for this feature:
BLAST of NO02G02100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30519.19.700e-12271.90nuclear migration protein nudC putative [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02100NO02G02100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02100.1NO02G02100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02100.1.cds1NO02G02100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02100.1 ID=NO02G02100.1|Name=NO02G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=978bp
ATGGAGGAAGGCCGGTTTGATCCGCTTCTCCTCAACATTGCTCAGCAATG
TCAAGGTATCGACGAACTGCTGGAGGTCTTCTTGTCGTTTTTGCGGCGCA
AGACTGATTTTTATACAGGCGCCACGGCCGACAAGGTGGAGGAAACAGTG
CGGTACGCCGTACGAAAGCAAATGGCCCTGGTGGAACGCACCATGCAGGA
GCAACGCCAAGCCCGCGAGGCTGAGGAGAAGCGGCGCCAGGATCGCTTGC
GTGCTACCAAGCTGAAGGAAGCGGAGGAGCAGAAGGCTATGAAGAATGCG
GCAGCAACGACCTCTTCCTCCTCGTCTTTGGTGGAGGTGGGATCGGACGG
AACGTTTGATGTTTCTTCTTCTGCAGCAGCAGCGCCTATCGAGAAGAAGG
CAAACTCCAAGAAGGCTGAGGACAACCCTGATAATGTGAAGGAGGGAGAG
GAGGCAGAAGTCAAGGAAGCTCCTCCGGGGAACGGCGGGACCACGGAGCA
CTACGTCTGGACGCAGCAGCTGGCAGAGGTGACGGTAAATGTGCCCGTGC
CAGTCGGAACGCGCTCTCGTGATTTGGTGGTGGACATCGGGAAGAAACGT
TTGCGGGTTGGGTTGAAAGGACAGCCTCCGATGGTGGATGGGGAGTTGCA
CAAGCCTGTGAAGGTGGATGATTCGTTTTGGACCGTTGAGGATGGCCGGG
AGGTGGTGGTGAATCTGCAGAAGGAGAACGGGATGGAGTGGTGGAAGTGC
GTAGTGGTGGGTGATCCTGAAATCGATACCAGTAAAGTGAATCCTGAGAA
CTCCAAGTTGAGTGACCTGGACGCCGAGACGAGACAGACGGTGGAGAAGA
TGATGTTTGATCAGCGGCAGAAGCAGATGGGGCTCCCCACGTCGGAAGAG
TTGAAGAAGAGGGAGATGCTGGAAAAATTTATGAAACAACACCCGGAGAT
GGATTTTAGTGGGGCGTCGATAAAGTGA
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protein sequence of NO02G02100.1

>NO02G02100.1-protein ID=NO02G02100.1-protein|Name=NO02G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MEEGRFDPLLLNIAQQCQGIDELLEVFLSFLRRKTDFYTGATADKVEETV
RYAVRKQMALVERTMQEQRQAREAEEKRRQDRLRATKLKEAEEQKAMKNA
AATTSSSSSLVEVGSDGTFDVSSSAAAAPIEKKANSKKAEDNPDNVKEGE
EAEVKEAPPGNGGTTEHYVWTQQLAEVTVNVPVPVGTRSRDLVVDIGKKR
LRVGLKGQPPMVDGELHKPVKVDDSFWTVEDGREVVVNLQKENGMEWWKC
VVVGDPEIDTSKVNPENSKLSDLDAETRQTVEKMMFDQRQKQMGLPTSEE
LKKREMLEKFMKQHPEMDFSGASIK*
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mRNA from alignment at chr2:596335..597312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02100.1 ID=NO02G02100.1|Name=NO02G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=978bp|location=Sequence derived from alignment at chr2:596335..597312- (Nannochloropsis oceanica)
ATGGAGGAAGGCCGGTTTGATCCGCTTCTCCTCAACATTGCTCAGCAATG
TCAAGGTATCGACGAACTGCTGGAGGTCTTCTTGTCGTTTTTGCGGCGCA
AGACTGATTTTTATACAGGCGCCACGGCCGACAAGGTGGAGGAAACAGTG
CGGTACGCCGTACGAAAGCAAATGGCCCTGGTGGAACGCACCATGCAGGA
GCAACGCCAAGCCCGCGAGGCTGAGGAGAAGCGGCGCCAGGATCGCTTGC
GTGCTACCAAGCTGAAGGAAGCGGAGGAGCAGAAGGCTATGAAGAATGCG
GCAGCAACGACCTCTTCCTCCTCGTCTTTGGTGGAGGTGGGATCGGACGG
AACGTTTGATGTTTCTTCTTCTGCAGCAGCAGCGCCTATCGAGAAGAAGG
CAAACTCCAAGAAGGCTGAGGACAACCCTGATAATGTGAAGGAGGGAGAG
GAGGCAGAAGTCAAGGAAGCTCCTCCGGGGAACGGCGGGACCACGGAGCA
CTACGTCTGGACGCAGCAGCTGGCAGAGGTGACGGTAAATGTGCCCGTGC
CAGTCGGAACGCGCTCTCGTGATTTGGTGGTGGACATCGGGAAGAAACGT
TTGCGGGTTGGGTTGAAAGGACAGCCTCCGATGGTGGATGGGGAGTTGCA
CAAGCCTGTGAAGGTGGATGATTCGTTTTGGACCGTTGAGGATGGCCGGG
AGGTGGTGGTGAATCTGCAGAAGGAGAACGGGATGGAGTGGTGGAAGTGC
GTAGTGGTGGGTGATCCTGAAATCGATACCAGTAAAGTGAATCCTGAGAA
CTCCAAGTTGAGTGACCTGGACGCCGAGACGAGACAGACGGTGGAGAAGA
TGATGTTTGATCAGCGGCAGAAGCAGATGGGGCTCCCCACGTCGGAAGAG
TTGAAGAAGAGGGAGATGCTGGAAAAATTTATGAAACAACACCCGGAGAT
GGATTTTAGTGGGGCGTCGATAAAGTGA
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Coding sequence (CDS) from alignment at chr2:596335..597312-

>NO02G02100.1 ID=NO02G02100.1|Name=NO02G02100.1|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at chr2:596335..597312- (Nannochloropsis oceanica)
ATGGAGGAAGGCCGGTTTGATCCGCTTCTCCTCAACATTGCTCAGCAATG
TCAAGGTATCGACGAACTGCTGGAGGTCTTCTTGTCGTTTTTGCGGCGCA
AGACTGATTTTTATACAGGCGCCACGGCCGACAAGGTGGAGGAAACAGTG
CGGTACGCCGTACGAAAGCAAATGGCCCTGGTGGAACGCACCATGCAGGA
GCAACGCCAAGCCCGCGAGGCTGAGGAGAAGCGGCGCCAGGATCGCTTGC
GTGCTACCAAGCTGAAGGAAGCGGAGGAGCAGAAGGCTATGAAGAATGCG
GCAGCAACGACCTCTTCCTCCTCGTCTTTGGTGGAGGTGGGATCGGACGG
AACGTTTGATGTTTCTTCTTCTGCAGCAGCAGCGCCTATCGAGAAGAAGG
CAAACTCCAAGAAGGCTGAGGACAACCCTGATAATGTGAAGGAGGGAGAG
GAGGCAGAAGTCAAGGAAGCTCCTCCGGGGAACGGCGGGACCACGGAGCA
CTACGTCTGGACGCAGCAGCTGGCAGAGGTGACGGTAAATGTGCCCGTGC
CAGTCGGAACGCGCTCTCGTGATTTGGTGGTGGACATCGGGAAGAAACGT
TTGCGGGTTGGGTTGAAAGGACAGCCTCCGATGGTGGATGGGGAGTTGCA
CAAGCCTGTGAAGGTGGATGATTCGTTTTGGACCGTTGAGGATGGCCGGG
AGGTGGTGGTGAATCTGCAGAAGGAGAACGGGATGGAGTGGTGGAAGTGC
GTAGTGGTGGGTGATCCTGAAATCGATACCAGTAAAGTGAATCCTGAGAA
CTCCAAGTTGAGTGACCTGGACGCCGAGACGAGACAGACGGTGGAGAAGA
TGATGTTTGATCAGCGGCAGAAGCAGATGGGGCTCCCCACGTCGGAAGAG
TTGAAGAAGAGGGAGATGCTGGAAAAATTTATGAAACAACACCCGGAGAT
GGATTTTAGTGGGGCGTCGATAAAGTGA
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Synonyms
Publications