NO02G02010.1, NO02G02010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02010.1
Unique NameNO02G02010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1728
Alignment locationchr2:573246..575076 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:573246..575076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G02010.1 vs.
Match: EWM30450.1 (soluble pyridine nucleotide transhydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 953.7 bits (2464), Expect = 2.500e-274
Identity = 478/577 (82.84%), Postives = 525/577 (90.99%), Query Frame = 0
Query:    1 MLMAAGSAVRRRLLPVVAGLPRVRLPIMSQQSCRAFANDSASKKDDEATTKVPIHPANANPFPTAGA-HAGKPDFDLIVIGSGPAAQACAISSSRRGKRVAVIDKPGMLGGVCVNTGTIPSKTFREAVLHLTGYRHQGFYGKVYAPSDRISMEGILHRVSMVVKGEKDVMRNRFRQYGITHIYGTAQFTGEEKSVQVTSAALEIEDRKKEHAIGTPGAGLEVEPYSKPFTAEKMLVAVGTTPARRPDFEFDGVHIIDSDDLLSGSIQKVPRELIVVGAGVIGMEYASMFNVIPGSRVTVIDGRPDILTFADKEIIQSLEYEMRQKGARFLLGEEVLSARIEGDHVVADMASGKVLRGDCLLYTVGRQGNTAGLCLEKTGLEVNKRGLLTINDNYQTSVPWLYAAGDCIGFPALASTSSQQGRMAAHHMWGEEGEEANKAFGGFPYGIYTIPEISMVGYTEQQLTQQKIPYEMGVARYDELAKGQMMGGSNGMLKILFHAETLKILGVHCMGESATEIVHVGQVAMDMNLDMHFLTENVFNYPTFAESYRVAAFNGLKRLALAGYTDLSDH---GAAS 574
            ML +  + +R     +V  +  VR P +++   RAFA+ S S KD+++ ++  IHP ++NP  T GA ++ KPDFDL+VIGSGPAAQACAISSSRRGK+VAVIDKPGMLGGVCVNTGTIPSKTFREAVLHLTGYRHQGFYGK YAP+ RISMEGILHRVSMVVKGEKDVMRNRFRQYGI+HIYGTA FTGEEK+VQVTS A+E E+RK++ A+GT GAGLEVEP+SKPFT EK LVAVGTTPARR DF+FDGVHIIDSDDLLSGS+Q+VPRELIVVGAGVIGMEYASMFNVIPG+RVTVIDGRPD+LTFADKEIIQSLEYEMRQKGARFLLGEEVL+AR+EGDHVVA+MASGKVLRGDCLLYTVGRQGNTAGL L+K G+EV+KRGL+T+NDNYQTSVPWLYAAGDCIGFPALASTSSQQGRMAAHHMWG    +A KAFGGFPYGIYTIPEISMVGYTEQQLTQQKIPYEMGVARYDELAKGQMMGGS+GMLK+LFHAETLKILGVHCMGESATEIVHVGQVAMDM +DMHFLTENVFNYPTFAESYRVAAFNGLKRLALAGYTD+S H   GAAS
Sbjct:    1 MLNSTSTTLRGPFSLLVGRMSLVRRPTLARNG-RAFADSSKSTKDEDSGSQTTIHPTHSNPKATPGAVNSQKPDFDLMVIGSGPAAQACAISSSRRGKKVAVIDKPGMLGGVCVNTGTIPSKTFREAVLHLTGYRHQGFYGKSYAPAGRISMEGILHRVSMVVKGEKDVMRNRFRQYGISHIYGTAHFTGEEKTVQVTSVAVEEEERKRKRAVGTAGAGLEVEPFSKPFTTEKALVAVGTTPARRADFDFDGVHIIDSDDLLSGSLQRVPRELIVVGAGVIGMEYASMFNVIPGTRVTVIDGRPDVLTFADKEIIQSLEYEMRQKGARFLLGEEVLNARVEGDHVVANMASGKVLRGDCLLYTVGRQGNTAGLGLDKAGVEVSKRGLMTVNDNYQTSVPWLYAAGDCIGFPALASTSSQQGRMAAHHMWGGNEGDALKAFGGFPYGIYTIPEISMVGYTEQQLTQQKIPYEMGVARYDELAKGQMMGGSSGMLKVLFHAETLKILGVHCMGESATEIVHVGQVAMDMGMDMHFLTENVFNYPTFAESYRVAAFNGLKRLALAGYTDVSQHQHEGAAS 576          
The following BLAST results are available for this feature:
BLAST of NO02G02010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30450.12.500e-27482.84soluble pyridine nucleotide transhydrogenase [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02010NO02G02010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02010.1NO02G02010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02010.1.cds1NO02G02010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02010.1.cds2NO02G02010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02010.1 ID=NO02G02010.1|Name=NO02G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp
ATGCTGATGGCAGCTGGTAGCGCAGTCAGGAGACGTCTGCTACCTGTCGT
TGCGGGGCTACCGCGCGTCCGCCTCCCCATAATGTCCCAGCAGAGTTGCC
GTGCATTTGCCAACGACAGCGCCTCGAAAAAGGACGACGAGGCCACCACT
AAAGTCCCCATACATCCCGCCAACGCCAACCCCTTTCCCACCGCTGGTGC
GCATGCGGGCAAACCTGATTTTGATCTTATTGTAATAGGCTCTGGTCCAG
CCGCCCAAGCCTGCGCCATCTCTTCCAGCCGACGTGGCAAGAGGGTTGCT
GTCATTGACAAGCCCGGTATGCTTGGTGGGGTGTGCGTCAACACGGGCAC
GATACCTAGCAAAACGTTTCGAGAGGCCGTCCTTCATCTGACGGGCTATC
GGCACCAAGGCTTTTACGGCAAGGTCTACGCGCCATCGGATCGCATCAGT
ATGGAGGGGATACTGCATCGTGTCTCAATGGTGGTAAAGGGCGAGAAGGA
TGTGATGCGGAATCGTTTTCGGCAATACGGCATTACCCACATCTATGGCA
CGGCACAATTTACGGGGGAAGAGAAGTCGGTGCAAGTCACCTCGGCGGCC
TTGGAGATTGAAGACCGAAAGAAAGAGCACGCCATAGGTACACCAGGGGC
GGGGCTTGAGGTGGAACCGTATAGCAAGCCGTTCACGGCGGAGAAGATGT
TGGTGGCTGTGGGGACAACGCCAGCCCGCAGGCCCGATTTTGAATTTGAC
GGGGTGCACATCATTGATAGTGATGATTTGCTCAGTGGGTCGATTCAGAA
GGTACCGCGGGAGCTGATTGTGGTGGGGGCGGGCGTGATTGGGATGGAGT
ATGCGAGTATGTTTAATGTTATCCCCGGGTCGAGGGTAACGGTGATTGAT
GGACGTCCGGATATCTTGACGTTCGCGGATAAAGAGATCATCCAGAGCTT
GGAATATGAAATGCGTCAGAAGGGGGCTCGGTTTTTGTTGGGGGAGGAGG
TGTTGAGTGCTCGGATTGAGGGTGATCATGTGGTAGCGGATATGGCGAGC
GGCAAAGTGCTGAGGGGGGATTGCCTGTTGTACACCGTGGGGAGGCAAGG
GAACACGGCGGGATTGTGCTTGGAAAAGACGGGTTTGGAGGTGAATAAAC
GAGGGCTTTTGACGATCAATGATAACTATCAAACATCTGTCCCGTGGTTA
TATGCCGCTGGCGATTGTATTGGATTTCCTGCCCTGGCCTCGACCTCCTC
GCAGCAGGGGCGGATGGCGGCGCATCACATGTGGGGGGAGGAGGGGGAGG
AGGCAAATAAGGCCTTTGGGGGTTTCCCGTATGGAATCTACACAATCCCG
GAGATTTCGATGGTGGGCTACACGGAGCAGCAGTTAACACAGCAAAAGAT
TCCCTATGAGATGGGCGTGGCGAGATATGATGAGTTGGCGAAGGGGCAGA
TGATGGGGGGGAGTAATGGGATGTTGAAGATTTTGTTCCATGCGGAGACA
TTGAAAATTTTGGGCGTGCATTGTATGGGTGAGAGTGCGACGGAAATTGT
GCATGTGGGCCAAGTAGCGATGGATATGAATCTGGATATGCATTTTTTGA
CGGAAAATGTTTTCAATTACCCGACATTTGCCGAGTCATATCGGGTGGCG
GCGTTTAATGGATTGAAGAGGTTGGCCTTGGCGGGGTATACTGACTTGTC
GGACCATGGGGCGGCGTCGTCGCCTTAA
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protein sequence of NO02G02010.1

>NO02G02010.1-protein ID=NO02G02010.1-protein|Name=NO02G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=576bp
MLMAAGSAVRRRLLPVVAGLPRVRLPIMSQQSCRAFANDSASKKDDEATT
KVPIHPANANPFPTAGAHAGKPDFDLIVIGSGPAAQACAISSSRRGKRVA
VIDKPGMLGGVCVNTGTIPSKTFREAVLHLTGYRHQGFYGKVYAPSDRIS
MEGILHRVSMVVKGEKDVMRNRFRQYGITHIYGTAQFTGEEKSVQVTSAA
LEIEDRKKEHAIGTPGAGLEVEPYSKPFTAEKMLVAVGTTPARRPDFEFD
GVHIIDSDDLLSGSIQKVPRELIVVGAGVIGMEYASMFNVIPGSRVTVID
GRPDILTFADKEIIQSLEYEMRQKGARFLLGEEVLSARIEGDHVVADMAS
GKVLRGDCLLYTVGRQGNTAGLCLEKTGLEVNKRGLLTINDNYQTSVPWL
YAAGDCIGFPALASTSSQQGRMAAHHMWGEEGEEANKAFGGFPYGIYTIP
EISMVGYTEQQLTQQKIPYEMGVARYDELAKGQMMGGSNGMLKILFHAET
LKILGVHCMGESATEIVHVGQVAMDMNLDMHFLTENVFNYPTFAESYRVA
AFNGLKRLALAGYTDLSDHGAASSP*
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mRNA from alignment at chr2:573246..575076-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02010.1 ID=NO02G02010.1|Name=NO02G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp|location=Sequence derived from alignment at chr2:573246..575076- (Nannochloropsis oceanica)
ATGCTGATGGCAGCTGGTAGCGCAGTCAGGAGACGTCTGCTACCTGTCGT TGCGGGGCTACCGCGCGTCCGCCTCCCCATAATGTCCCAGCAGAGTTGCC GTGCATTTGCCAACGACAGCGCCTCGAAAAAGGACGACGAGGCCACCACT AAAGTCCCCATACATCCCGCCAACGCCAACCCCTTTCCCACCGCTGGTGC GCATGCGGGCAAACCTGATTTTGATCTTATTGTAATAGGCTCTGGTCCAG GTTAGTTAACTCATTTGAGTAGAGTAGGGTTTGATTTTGATTCGATTAAC ATTCAACCGTCTCACTCCCTTCTCTCTCCCTCCCTCCTTCCTCACAATTA CAGCCGCCCAAGCCTGCGCCATCTCTTCCAGCCGACGTGGCAAGAGGGTT GCTGTCATTGACAAGCCCGGTATGCTTGGTGGGGTGTGCGTCAACACGGG CACGATACCTAGCAAAACGTTTCGAGAGGCCGTCCTTCATCTGACGGGCT ATCGGCACCAAGGCTTTTACGGCAAGGTCTACGCGCCATCGGATCGCATC AGTATGGAGGGGATACTGCATCGTGTCTCAATGGTGGTAAAGGGCGAGAA GGATGTGATGCGGAATCGTTTTCGGCAATACGGCATTACCCACATCTATG GCACGGCACAATTTACGGGGGAAGAGAAGTCGGTGCAAGTCACCTCGGCG GCCTTGGAGATTGAAGACCGAAAGAAAGAGCACGCCATAGGTACACCAGG GGCGGGGCTTGAGGTGGAACCGTATAGCAAGCCGTTCACGGCGGAGAAGA TGTTGGTGGCTGTGGGGACAACGCCAGCCCGCAGGCCCGATTTTGAATTT GACGGGGTGCACATCATTGATAGTGATGATTTGCTCAGTGGGTCGATTCA GAAGGTACCGCGGGAGCTGATTGTGGTGGGGGCGGGCGTGATTGGGATGG AGTATGCGAGTATGTTTAATGTTATCCCCGGGTCGAGGGTAACGGTGATT GATGGACGTCCGGATATCTTGACGTTCGCGGATAAAGAGATCATCCAGAG CTTGGAATATGAAATGCGTCAGAAGGGGGCTCGGTTTTTGTTGGGGGAGG AGGTGTTGAGTGCTCGGATTGAGGGTGATCATGTGGTAGCGGATATGGCG AGCGGCAAAGTGCTGAGGGGGGATTGCCTGTTGTACACCGTGGGGAGGCA AGGGAACACGGCGGGATTGTGCTTGGAAAAGACGGGTTTGGAGGTGAATA AACGAGGGCTTTTGACGATCAATGATAACTATCAAACATCTGTCCCGTGG TTATATGCCGCTGGCGATTGTATTGGATTTCCTGCCCTGGCCTCGACCTC CTCGCAGCAGGGGCGGATGGCGGCGCATCACATGTGGGGGGAGGAGGGGG AGGAGGCAAATAAGGCCTTTGGGGGTTTCCCGTATGGAATCTACACAATC CCGGAGATTTCGATGGTGGGCTACACGGAGCAGCAGTTAACACAGCAAAA GATTCCCTATGAGATGGGCGTGGCGAGATATGATGAGTTGGCGAAGGGGC AGATGATGGGGGGGAGTAATGGGATGTTGAAGATTTTGTTCCATGCGGAG ACATTGAAAATTTTGGGCGTGCATTGTATGGGTGAGAGTGCGACGGAAAT TGTGCATGTGGGCCAAGTAGCGATGGATATGAATCTGGATATGCATTTTT TGACGGAAAATGTTTTCAATTACCCGACATTTGCCGAGTCATATCGGGTG GCGGCGTTTAATGGATTGAAGAGGTTGGCCTTGGCGGGGTATACTGACTT GTCGGACCATGGGGCGGCGTCGTCGCCTTAA
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Coding sequence (CDS) from alignment at chr2:573246..575076-

>NO02G02010.1 ID=NO02G02010.1|Name=NO02G02010.1|organism=Nannochloropsis oceanica|type=CDS|length=1728bp|location=Sequence derived from alignment at chr2:573246..575076- (Nannochloropsis oceanica)
ATGCTGATGGCAGCTGGTAGCGCAGTCAGGAGACGTCTGCTACCTGTCGT
TGCGGGGCTACCGCGCGTCCGCCTCCCCATAATGTCCCAGCAGAGTTGCC
GTGCATTTGCCAACGACAGCGCCTCGAAAAAGGACGACGAGGCCACCACT
AAAGTCCCCATACATCCCGCCAACGCCAACCCCTTTCCCACCGCTGGTGC
GCATGCGGGCAAACCTGATTTTGATCTTATTGTAATAGGCTCTGGTCCAG
CCGCCCAAGCCTGCGCCATCTCTTCCAGCCGACGTGGCAAGAGGGTTGCT
GTCATTGACAAGCCCGGTATGCTTGGTGGGGTGTGCGTCAACACGGGCAC
GATACCTAGCAAAACGTTTCGAGAGGCCGTCCTTCATCTGACGGGCTATC
GGCACCAAGGCTTTTACGGCAAGGTCTACGCGCCATCGGATCGCATCAGT
ATGGAGGGGATACTGCATCGTGTCTCAATGGTGGTAAAGGGCGAGAAGGA
TGTGATGCGGAATCGTTTTCGGCAATACGGCATTACCCACATCTATGGCA
CGGCACAATTTACGGGGGAAGAGAAGTCGGTGCAAGTCACCTCGGCGGCC
TTGGAGATTGAAGACCGAAAGAAAGAGCACGCCATAGGTACACCAGGGGC
GGGGCTTGAGGTGGAACCGTATAGCAAGCCGTTCACGGCGGAGAAGATGT
TGGTGGCTGTGGGGACAACGCCAGCCCGCAGGCCCGATTTTGAATTTGAC
GGGGTGCACATCATTGATAGTGATGATTTGCTCAGTGGGTCGATTCAGAA
GGTACCGCGGGAGCTGATTGTGGTGGGGGCGGGCGTGATTGGGATGGAGT
ATGCGAGTATGTTTAATGTTATCCCCGGGTCGAGGGTAACGGTGATTGAT
GGACGTCCGGATATCTTGACGTTCGCGGATAAAGAGATCATCCAGAGCTT
GGAATATGAAATGCGTCAGAAGGGGGCTCGGTTTTTGTTGGGGGAGGAGG
TGTTGAGTGCTCGGATTGAGGGTGATCATGTGGTAGCGGATATGGCGAGC
GGCAAAGTGCTGAGGGGGGATTGCCTGTTGTACACCGTGGGGAGGCAAGG
GAACACGGCGGGATTGTGCTTGGAAAAGACGGGTTTGGAGGTGAATAAAC
GAGGGCTTTTGACGATCAATGATAACTATCAAACATCTGTCCCGTGGTTA
TATGCCGCTGGCGATTGTATTGGATTTCCTGCCCTGGCCTCGACCTCCTC
GCAGCAGGGGCGGATGGCGGCGCATCACATGTGGGGGGAGGAGGGGGAGG
AGGCAAATAAGGCCTTTGGGGGTTTCCCGTATGGAATCTACACAATCCCG
GAGATTTCGATGGTGGGCTACACGGAGCAGCAGTTAACACAGCAAAAGAT
TCCCTATGAGATGGGCGTGGCGAGATATGATGAGTTGGCGAAGGGGCAGA
TGATGGGGGGGAGTAATGGGATGTTGAAGATTTTGTTCCATGCGGAGACA
TTGAAAATTTTGGGCGTGCATTGTATGGGTGAGAGTGCGACGGAAATTGT
GCATGTGGGCCAAGTAGCGATGGATATGAATCTGGATATGCATTTTTTGA
CGGAAAATGTTTTCAATTACCCGACATTTGCCGAGTCATATCGGGTGGCG
GCGTTTAATGGATTGAAGAGGTTGGCCTTGGCGGGGTATACTGACTTGTC
GGACCATGGGGCGGCGTCGTCGCCTTAA
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Synonyms
Publications