NO02G01940.1, NO02G01940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01940.1
Unique NameNO02G01940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length642
Alignment locationchr2:555834..557584 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:555834..557584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01940.1 vs.
Match: EWM30455.1 (gtp-binding nuclear protein ran [Nannochloropsis gaditana])

HSP 1 Score: 449.5 bits (1155), Expect = 5.800e-123
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0 
Query:    1 MTDFIPEFKLILVGDGGVGKTTFVRRHLTGEFEKRYVATLGVEVHPLLFHTNRGQIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVKPKQIIFHRKKNLQYYDISAKSNYNFEKPFLWLARKLTGDNNLHFVEAPALAPPEVAYDQNDMVRYEQELTEAAAMPLPDEDDDL 214
            MTDFIPEFKLILVGDGGVGKTTFVRRHLTGEFEKRYVATLGVEVHPLLFHTNRGQIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVKPKQIIFHRKKNLQYYDISAKSNYNFEKPFLWLARKLTGDNNLHFVEAPALAPPEVAYDQNDMVRYEQELTEAAAMPLPDEDDDL
Sbjct:    1 MTDFIPEFKLILVGDGGVGKTTFVRRHLTGEFEKRYVATLGVEVHPLLFHTNRGQIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLTRVCENIPIVLCGNKVEIKDRKVKPKQIIFHRKKNLQYYDISAKSNYNFEKPFLWLARKLTGDNNLHFVEAPALAPPEVAYDQNDMVRYEQELTEAAAMPLPDEDDDL 213
The following BLAST results are available for this feature:
BLAST of NO02G01940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30455.15.800e-123100.00gtp-binding nuclear protein ran [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01940NO02G01940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01940.1NO02G01940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01940.1.cds1NO02G01940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01940.1.cds2NO02G01940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01940.1.cds3NO02G01940.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01940.1.cds4NO02G01940.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01940.1.cds5NO02G01940.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01940.1 ID=NO02G01940.1|Name=NO02G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=642bp
ATGACCGACTTCATCCCCGAGTTTAAGTTGATTCTAGTTGGAGATGGTGG
AGTGGGTAAGACGACGTTTGTGCGTCGTCATTTGACGGGAGAATTTGAGA
AGCGCTACGTTGCGACCTTGGGGGTGGAGGTGCACCCGCTGTTGTTCCAC
ACGAACCGCGGTCAGATCAAGTTCAATGTGTGGGACACGGCGGGACAGGA
GAAATTTGGGGGTCTGCGGGACGGTTATTATATTCAGGGGCAGTGTGCGA
TCATCATGTTTGATGTCACGAGTCGAATTACGTATAAAAACGTGCCCAAC
TGGCATAGAGACCTGACGAGGGTGTGTGAGAACATCCCTATTGTACTGTG
CGGGAACAAGGTGGAGATCAAGGACCGGAAGGTGAAGCCGAAGCAAATCA
TTTTCCATCGCAAGAAGAACCTGCAGTATTATGACATTTCTGCCAAATCC
AACTACAACTTCGAGAAGCCTTTCCTCTGGTTGGCGCGCAAACTGACGGG
CGACAACAACCTGCACTTTGTGGAGGCGCCCGCGCTGGCTCCGCCCGAGG
TGGCCTACGACCAGAACGACATGGTTCGCTACGAGCAAGAGCTGACCGAG
GCTGCTGCCATGCCCCTGCCCGATGAGGATGATGACTTGTAA
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protein sequence of NO02G01940.1

>NO02G01940.1-protein ID=NO02G01940.1-protein|Name=NO02G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MTDFIPEFKLILVGDGGVGKTTFVRRHLTGEFEKRYVATLGVEVHPLLFH
TNRGQIKFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN
WHRDLTRVCENIPIVLCGNKVEIKDRKVKPKQIIFHRKKNLQYYDISAKS
NYNFEKPFLWLARKLTGDNNLHFVEAPALAPPEVAYDQNDMVRYEQELTE
AAAMPLPDEDDDL*
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mRNA from alignment at chr2:555834..557584+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01940.1 ID=NO02G01940.1|Name=NO02G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1751bp|location=Sequence derived from alignment at chr2:555834..557584+ (Nannochloropsis oceanica)
ATGGTACGTGCGAGGACGATTGACGAAAGGACGAGGAGGGAGGCTGGGAG
AGGACGAGATGATGGGGGAACACAAAGTGCGGACCCTTCGCTTGAGACAG
GGCGGAAGACATGTAGTGTAAGAAAAAGAAAGAGGGGCGCCTGAAATGTT
GTTTGTAGTAGTGTGGAGGTAGGATGCTCTGCAAGATTGGTGTTGCATGG
GGTTCCTCACGTCATGCTTCTTGGCCTTCCATGAGGCGTTGTGGGAAGAG
GTGGCCATGGGAGGTACATGGGAAGTGCTGACTCAAGATGTTAAGCATCC
TCTCGCTCTCACCCAAATAATATATTACCAAGACATACTCACCCACTACT
CCTCTCTACATACCTCCTTTCTCCCCTCTTTACGACCCCACCCACCCCTT
TCTCCCCTCCTTTCCTCCAATCCCTTCCCTTACAGACCGACTTCATCCCC
GAGTTTAAGTTGATTCTAGTTGGAGATGGTGGAGTGGGTAAGACGACGTT
TGTGCGTCGTCATTTGACGGGAGAATTTGAGAAGCGCTACGTTGCGACCT
TGGGGGTGGAGGTGCACCCGCTGTTGTTCCACACGAACCGCGGTCAGATC
AAGTTCAATGTGTGGGACACGGCGGGACAGGAGAAATTTGGGGGTCTGCG
GGACGGTTATTATATTCAGGGGCAGTGTGCGATCATCATGTTTGATGTCA
CGAGTCGAATTACGTATAAAAACGTGCCCAACTGGCATAGAGACCTGACG
AGGGTGTGTGAGAACATCCCTATTGTACTGTGCGGGAACAAGGTGGAGAT
CAAGGTCCGTTTTTGTGGTGGAAGTGGGTCGGGGTGAATGGAACGAGAAG
GTGACATATGAGTCGGCGTCTGTGCTCGAAGGACGCTGGTAGGGGGGGGG
GATGATCTCCAGGGGACTGTGTGAGCGTGCATGATATTCCTCATTTCATT
GGTGGGTCGAAGGACGGATAAGAATCTGTTTGTTGCGGACCTTTTCGTCT
CCTTACATAGCGTCGGTCTGTATGCTCACCGTTTCTCCCTCCCTCCCTCC
CTACTCTTCCTCCCTCCCTCCTTCCTTCCTCCATCGACAGGACCGGAAGG
TGAAGCCGAAGCAAATCATTTTCCATCGCAAGAAGAACCTGCAGTATTAT
GACATTTCTGCCAAATCCAACTACAACTTCGAGAAGCCTTTCCTCTGGTT
GGCGCGCAAACTGACGGGGTAAGGACAAGACCGCGGGGAAGGAGGGAAAT
AGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGAGGAAGACGTTCAGAGGTCTGGAGTGTGTTGTCTTGGTGAGTGCATT
GGTGATAAGCATACAATTATGGTAAGCCTCACTCCATCCTTGACTCCCTA
CTTATTCACGTCCAGCGACAACAACCTGCACTTTGTGGAGGCGCCCGCGC
TGGCTCCGCCCGAGGTGGCCTACGACCAGAACGACATGGTTCGCTACGAG
CAAGAGCTGACCGAGGCTGCTGCCATGCCCCTGCCCGATGTACGTGTACA
TGGGCATTTGTGTCTCGTGCTTCTTGTCTTTCCCTCTCACTGTCTCTATT
TTCCTCTCCTCTCGTTAACTCTTTATCTCATCTCCTTTCGCAATGGTTTG
CTGGATTGTGGCGTTTGGTCGGGATGAATTTTGTTATTCAAACACTAGCT
CATTTCTTTTTCCTTTTTCCTACACATATTTAGGAGGATGATGACTTGTA
A
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Coding sequence (CDS) from alignment at chr2:555834..557584+

>NO02G01940.1 ID=NO02G01940.1|Name=NO02G01940.1|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at chr2:555834..557584+ (Nannochloropsis oceanica)
ATGACCGACTTCATCCCCGAGTTTAAGTTGATTCTAGTTGGAGATGGTGG
AGTGGGTAAGACGACGTTTGTGCGTCGTCATTTGACGGGAGAATTTGAGA
AGCGCTACGTTGCGACCTTGGGGGTGGAGGTGCACCCGCTGTTGTTCCAC
ACGAACCGCGGTCAGATCAAGTTCAATGTGTGGGACACGGCGGGACAGGA
GAAATTTGGGGGTCTGCGGGACGGTTATTATATTCAGGGGCAGTGTGCGA
TCATCATGTTTGATGTCACGAGTCGAATTACGTATAAAAACGTGCCCAAC
TGGCATAGAGACCTGACGAGGGTGTGTGAGAACATCCCTATTGTACTGTG
CGGGAACAAGGTGGAGATCAAGGACCGGAAGGTGAAGCCGAAGCAAATCA
TTTTCCATCGCAAGAAGAACCTGCAGTATTATGACATTTCTGCCAAATCC
AACTACAACTTCGAGAAGCCTTTCCTCTGGTTGGCGCGCAAACTGACGGG
CGACAACAACCTGCACTTTGTGGAGGCGCCCGCGCTGGCTCCGCCCGAGG
TGGCCTACGACCAGAACGACATGGTTCGCTACGAGCAAGAGCTGACCGAG
GCTGCTGCCATGCCCCTGCCCGATGAGGATGATGACTTGTAA
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Synonyms
Publications