NO02G01910.1, NO02G01910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01910.1
Unique NameNO02G01910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1956
Alignment locationchr2:547949..550138 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:547949..550138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G01910.1 vs.
Match: EWM30443.1 (fucosyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 819.7 bits (2116), Expect = 5.900e-234
Identity = 409/582 (70.27%), Postives = 455/582 (78.18%), Query Frame = 0
Query:   16 EGSADFPDASGAGSDFEDSSLSSSLRKEAAESWPNCVGRGAWVLTFLLLVAGVVGFSMVAFSQGLLEPVGQHSPLATLRGATNSKSLAPAELRVAASRNSANDNAAAPSLPSDNAEKKKKTKKKDIFNSVEAVDKVWVDEEENPFDKDWETFPPSELADHCGVSDIFYWQRYDEEILAAAAADGAAVEVKNPWAKLGPERKYVTFEPDHGGWNNIRMAMEVVLVFAYATGRTLVMPPEQGMYLLNKGDAPDDNKLHFSDFFYLNRLREKMEMIEMKDFLEAEATSGHLGPLPPGNRTDLESGELWSYLNGLGQGPVRWNPFKVCVAFTETPGKAVEEHSKEQQERLDLFCGKREPVFYDKAMQEAKVIHFGSGEDMRVLAHFYTFEHFMDPALDKAVKRFVRNYIHYRDEVFCAAGRIIAAMETAAGPGGFKALHIRRGDLQFKEVKIPAEEIIETTKDILNEGETIYVATDEKDAAYLDVLRARFNVYFLNDFHERVGLGKLNQNYMGMVEQIVCSRSQVFIGTWFSTFTGYITRMRGYNGFDYRSNWYHYSLRKDSFQTEYYSRDPWYVREWPEGWVDID 598
            E S+D+ DASG+ SD EDSS+     KE+   W NC GR  WVL  L+ VA  +GF MV+FSQ         +P A LRG    + +AP  L          D A +P        ++KK KKKD+FNSV +VDKVWVDEE NPFDK+WE FPPSELADHCG SDIFYWQRYD ++           +V NPWA LGPE+KYVTFEPD GGWNNIRMAMEVVLVFAYATGRTLVMPPEQ MYLLNKG  P DN LHF+DFFYL+RL+EKMEMIEMKDFLE EA +G+LG LPP N TDL    LW YL GL  G   W PF VC+AF ETPGK +E+HS EQQERL  FCGKR PV Y++ +Q+AKVIHFG+G+  RVLAHFYTFEHFMDPALD+AVKRFVR+YIHYRDEVFCAAGRIIAAMET AGPGG+KALHIRRGDLQFKEVKIPAE+II  TKDIL E ETIY+ATDE D AYLDV R RFNV+FL DFHERVGL KLNQNYMGM+EQIVCSRSQVFIGTWFSTFTGYITRMRGY GFDYR+NWYH+ LRKDSFQTEY+ RDPWYVREWPEGWV+ID
Sbjct:   12 EESSDYVDASGSDSD-EDSSVLGHGLKESQAEWLNCTGRRPWVL--LVFVASAIGFVMVSFSQETTVSSRSFTPFAALRGVY-PRMVAPPVL---------GDAAISP--------REKKIKKKDVFNSVNSVDKVWVDEEANPFDKNWEKFPPSELADHCGASDIFYWQRYDPDL----------EKVVNPWAALGPEKKYVTFEPDRGGWNNIRMAMEVVLVFAYATGRTLVMPPEQNMYLLNKGSDPGDNTLHFADFFYLHRLQEKMEMIEMKDFLETEAVTGNLGALPPSNSTDLRRDVLWKYLEGLEVGTTHWKPFDVCLAFPETPGKPIEDHSAEQQERLKEFCGKRTPVHYNETLQDAKVIHFGAGQGSRVLAHFYTFEHFMDPALDRAVKRFVRSYIHYRDEVFCAAGRIIAAMETEAGPGGYKALHIRRGDLQFKEVKIPAEKIIANTKDILKENETIYIATDETDEAYLDVFRKRFNVFFLKDFHERVGLPKLNQNYMGMLEQIVCSRSQVFIGTWFSTFTGYITRMRGYYGFDYRTNWYHFGLRKDSFQTEYHPRDPWYVREWPEGWVNID 562          
The following BLAST results are available for this feature:
BLAST of NO02G01910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30443.15.900e-23470.27fucosyltransferase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01910NO02G01910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01910.1NO02G01910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01910.1.cds1NO02G01910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01910.1.cds2NO02G01910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01910.1 ID=NO02G01910.1|Name=NO02G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1956bp
ACAGCCGCCGCCACAATGCGACGTCGGCCTGTCGAGGATGATGACACCAG
CGATCATTCAGAAGGCTCAGCAGATTTTCCCGATGCCTCAGGTGCGGGCT
CAGACTTCGAGGACAGCTCTCTCTCTAGCAGCCTGCGGAAAGAAGCAGCT
GAGAGCTGGCCCAACTGCGTTGGGCGTGGCGCATGGGTCCTGACCTTCTT
GCTCCTGGTCGCGGGTGTGGTGGGCTTTAGCATGGTAGCCTTTTCTCAAG
GTCTATTGGAGCCGGTAGGGCAGCACAGCCCTTTGGCGACCTTACGGGGT
GCGACTAACTCAAAGAGCTTGGCCCCCGCGGAGCTGCGCGTGGCTGCAAG
CCGCAACAGCGCGAATGATAACGCAGCAGCACCATCCTTACCATCTGACA
ATGCCGAAAAGAAGAAAAAGACTAAGAAAAAGGATATATTCAATAGCGTG
GAGGCCGTCGACAAGGTGTGGGTGGATGAGGAGGAAAATCCCTTTGACAA
GGACTGGGAGACGTTCCCCCCCTCCGAGCTCGCGGACCACTGCGGTGTCT
CGGATATTTTCTACTGGCAGCGTTACGATGAAGAGATCTTGGCTGCTGCC
GCCGCAGACGGGGCGGCGGTGGAGGTGAAGAACCCTTGGGCAAAGTTGGG
ACCGGAGAGGAAGTATGTGACGTTTGAGCCGGACCATGGGGGGTGGAATA
ACATCCGAATGGCTATGGAGGTCGTCTTAGTTTTCGCTTATGCTACTGGA
CGAACGTTGGTAATGCCACCGGAGCAAGGAATGTATCTATTGAACAAGGG
CGATGCCCCCGACGACAATAAGTTACACTTTTCTGACTTCTTTTACTTGA
ACCGGCTGCGGGAGAAGATGGAGATGATCGAAATGAAGGACTTCTTGGAG
GCAGAGGCCACGTCAGGCCATCTTGGACCGCTTCCCCCTGGTAATCGCAC
GGACCTGGAAAGTGGCGAGCTATGGAGTTATTTGAATGGTCTGGGACAGG
GGCCAGTGCGCTGGAACCCTTTCAAGGTGTGTGTGGCTTTTACTGAGACT
CCGGGCAAGGCCGTAGAGGAGCATTCGAAGGAGCAGCAGGAGAGGTTGGA
CTTGTTTTGTGGGAAGCGAGAGCCAGTATTTTATGATAAGGCGATGCAGG
AGGCCAAGGTGATTCATTTCGGGTCGGGCGAGGACATGCGTGTGTTGGCG
CATTTTTACACTTTCGAGCACTTCATGGACCCGGCTTTGGATAAGGCGGT
GAAACGATTTGTCAGAAACTACATACATTACCGCGACGAGGTCTTTTGCG
CGGCCGGCCGGATCATTGCGGCAATGGAGACAGCTGCTGGCCCCGGGGGA
TTCAAAGCCCTCCACATTCGCCGGGGAGACTTGCAATTTAAGGAGGTCAA
GATCCCTGCAGAAGAGATCATTGAGACCACCAAGGATATTTTGAATGAGG
GGGAGACGATTTACGTTGCCACGGACGAGAAGGACGCGGCTTATTTGGAT
GTGCTAAGGGCGCGATTTAATGTGTATTTTTTGAATGATTTCCACGAGAG
GGTGGGTTTGGGGAAGCTAAATCAGAATTATATGGGCATGGTGGAGCAGA
TTGTGTGCTCGCGGTCGCAGGTCTTCATTGGGACGTGGTTCTCGACGTTC
ACGGGGTATATTACCCGGATGCGCGGGTACAATGGGTTTGATTATCGCTC
GAATTGGTATCATTATAGTCTGCGGAAAGACTCGTTTCAGACGGAGTACT
ACTCACGGGACCCCTGGTATGTCCGTGAATGGCCGGAAGGATGGGTGGAT
ATTGATTAATCGGAGACATGATTAGGAATGGAGGGCGGTGGGGAGGAGGA
TAGAGGAAGAAGGAGGATGCAGGGAAAGTATGCATGCATGTAAACCAAGG
GAAAAAGAGGGAACACAAGAAAAAGAAAAAATAAGTCGACAATAGAATCA
AGAAGC
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protein sequence of NO02G01910.1

>NO02G01910.1-protein ID=NO02G01910.1-protein|Name=NO02G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=598bp
MRRRPVEDDDTSDHSEGSADFPDASGAGSDFEDSSLSSSLRKEAAESWPN
CVGRGAWVLTFLLLVAGVVGFSMVAFSQGLLEPVGQHSPLATLRGATNSK
SLAPAELRVAASRNSANDNAAAPSLPSDNAEKKKKTKKKDIFNSVEAVDK
VWVDEEENPFDKDWETFPPSELADHCGVSDIFYWQRYDEEILAAAAADGA
AVEVKNPWAKLGPERKYVTFEPDHGGWNNIRMAMEVVLVFAYATGRTLVM
PPEQGMYLLNKGDAPDDNKLHFSDFFYLNRLREKMEMIEMKDFLEAEATS
GHLGPLPPGNRTDLESGELWSYLNGLGQGPVRWNPFKVCVAFTETPGKAV
EEHSKEQQERLDLFCGKREPVFYDKAMQEAKVIHFGSGEDMRVLAHFYTF
EHFMDPALDKAVKRFVRNYIHYRDEVFCAAGRIIAAMETAAGPGGFKALH
IRRGDLQFKEVKIPAEEIIETTKDILNEGETIYVATDEKDAAYLDVLRAR
FNVYFLNDFHERVGLGKLNQNYMGMVEQIVCSRSQVFIGTWFSTFTGYIT
RMRGYNGFDYRSNWYHYSLRKDSFQTEYYSRDPWYVREWPEGWVDID*
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mRNA from alignment at chr2:547949..550138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01910.1 ID=NO02G01910.1|Name=NO02G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp|location=Sequence derived from alignment at chr2:547949..550138- (Nannochloropsis oceanica)
ACAGCCGCCGCCACAATGCGACGTCGGCCTGTCGAGGATGATGACACCAG CGATCATTCAGAAGGCTCAGCAGATTTTCCCGATGCCTCAGGTGCGGGCT CAGACTTCGAGGACAGCTCTCTCTCTAGCAGCCTGCGGAAAGAAGCAGCT GAGAGCTGGCCCAACTGCGTTGGGCGTGGCGCATGGGTCCTGACCTTCTT GCTCCTGGTCGCGGGTGTGGTGGGCTTTAGCATGGTAGCCTTTTCTCAAG GTCTATTGGAGCCGGTAGGGCAGCACAGCCCTTTGGCGACCTTACGGGGT GCGACTAACTCAAAGAGCTTGGCCCCCGCGGAGCTGCGCGTGGCTGCAAG CCGCAACAGCGCGAATGATAACGCAGCAGCACCATCCTTACCATCTGACA ATGCCGAAAAGAAGAAAAAGACTAAGAAAAAGGATATATTCAATAGCGTG GAGGCCGTCGACAAGGTGTGGGTGGATGAGGAGGAAAATCCCTTTGACAA GGACTGGGAGACGTTCCCCCCCTCCGAGCTCGCGGACCACTGCGGTGTCT CGGATATTTTCTACTGGCAGCGTTACGATGAAGAGATCTTGGCTGCTGCC GCCGCAGACGGGGCGGCGGTGGAGGTGAAGAACCCTTGGGCAAAGTTGGG ACCGGAGAGGAAGTATGTGACGTTTGAGCCGGACCATGGGGGGTGGAATA ACATCCGAATGGCTATGGAGGTCGTCTTAGTTTTCGCTTATGCTACTGGA CGAACGTTGGTAATGCCACCGGAGCAAGGAATGTATCTATTGAACAAGGG CGATGCCCCCGACGACAATAAGTTACACTTTTCTGACTTCTTTTACTTGA ACCGGCTGCGGGAGAAGATGGAGATGATCGAAATGAAGGACTTCTTGGAG GCAGAGGCCACGTCAGGCCATCTTGGACCGCTTCCCCCTGGTAATCGCAC GGACCTGGAAAGTGGCGAGCTATGGAGTTATTTGAATGGTCTGGGACAGG GGCCAGTGCGCTGGAACCCTTTCAAGGTGTGTGTGGCTTTTACTGAGACT CCGGGCAAGGCCGTAGAGGAGCATTCGAAGGAGCAGCAGGAGAGGTTGGA CTTGTTTTGTGGGAAGCGAGAGCCAGTATTTTATGATAAGGCGATGCAGG AGGCCAAGGTGATTCATTTCGGGTCGGGCGAGGACATGCGTGTGTTGGCG CATTTTTACACTTTCGAGCACTTCATGGACCCGGCTTTGGATAAGGCGGT GAAACGATTTGTCAGGTATGACTGTATGGACAGAGGGACAGAAGAAGAGG GTGATTATAAAGGTTTGTGGGATAGATGCTTTGTATTGAATTGAATGGAA CGTCCCCGGACTTGACAGCTGCACGCCCTCCTCCTGTGTGTGCATTCTCT TTTTTTCCGTCCTCCCTCCCTCCAATAGGACACCTTTCACACGACCCACA CATAAACATATGTTGCCACTTTCTTTATGTGTTCCCCTTTACCATACAGA AACTACATACATTACCGCGACGAGGTCTTTTGCGCGGCCGGCCGGATCAT TGCGGCAATGGAGACAGCTGCTGGCCCCGGGGGATTCAAAGCCCTCCACA TTCGCCGGGGAGACTTGCAATTTAAGGAGGTCAAGATCCCTGCAGAAGAG ATCATTGAGACCACCAAGGATATTTTGAATGAGGGGGAGACGATTTACGT TGCCACGGACGAGAAGGACGCGGCTTATTTGGATGTGCTAAGGGCGCGAT TTAATGTGTATTTTTTGAATGATTTCCACGAGAGGGTGGGTTTGGGGAAG CTAAATCAGAATTATATGGGCATGGTGGAGCAGATTGTGTGCTCGCGGTC GCAGGTCTTCATTGGGACGTGGTTCTCGACGTTCACGGGGTATATTACCC GGATGCGCGGGTACAATGGGTTTGATTATCGCTCGAATTGGTATCATTAT AGTCTGCGGAAAGACTCGTTTCAGACGGAGTACTACTCACGGGACCCCTG GTATGTCCGTGAATGGCCGGAAGGATGGGTGGATATTGATTAATCGGAGA CATGATTAGGAATGGAGGGCGGTGGGGAGGAGGATAGAGGAAGAAGGAGG ATGCAGGGAAAGTATGCATGCATGTAAACCAAGGGAAAAAGAGGGAACAC AAGAAAAAGAAAAAATAAGTCGACAATAGAATCAAGAAGC
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Coding sequence (CDS) from alignment at chr2:547949..550138-

>NO02G01910.1 ID=NO02G01910.1|Name=NO02G01910.1|organism=Nannochloropsis oceanica|type=CDS|length=1794bp|location=Sequence derived from alignment at chr2:547949..550138- (Nannochloropsis oceanica)
ATGCGACGTCGGCCTGTCGAGGATGATGACACCAGCGATCATTCAGAAGG
CTCAGCAGATTTTCCCGATGCCTCAGGTGCGGGCTCAGACTTCGAGGACA
GCTCTCTCTCTAGCAGCCTGCGGAAAGAAGCAGCTGAGAGCTGGCCCAAC
TGCGTTGGGCGTGGCGCATGGGTCCTGACCTTCTTGCTCCTGGTCGCGGG
TGTGGTGGGCTTTAGCATGGTAGCCTTTTCTCAAGGTCTATTGGAGCCGG
TAGGGCAGCACAGCCCTTTGGCGACCTTACGGGGTGCGACTAACTCAAAG
AGCTTGGCCCCCGCGGAGCTGCGCGTGGCTGCAAGCCGCAACAGCGCGAA
TGATAACGCAGCAGCACCATCCTTACCATCTGACAATGCCGAAAAGAAGA
AAAAGACTAAGAAAAAGGATATATTCAATAGCGTGGAGGCCGTCGACAAG
GTGTGGGTGGATGAGGAGGAAAATCCCTTTGACAAGGACTGGGAGACGTT
CCCCCCCTCCGAGCTCGCGGACCACTGCGGTGTCTCGGATATTTTCTACT
GGCAGCGTTACGATGAAGAGATCTTGGCTGCTGCCGCCGCAGACGGGGCG
GCGGTGGAGGTGAAGAACCCTTGGGCAAAGTTGGGACCGGAGAGGAAGTA
TGTGACGTTTGAGCCGGACCATGGGGGGTGGAATAACATCCGAATGGCTA
TGGAGGTCGTCTTAGTTTTCGCTTATGCTACTGGACGAACGTTGGTAATG
CCACCGGAGCAAGGAATGTATCTATTGAACAAGGGCGATGCCCCCGACGA
CAATAAGTTACACTTTTCTGACTTCTTTTACTTGAACCGGCTGCGGGAGA
AGATGGAGATGATCGAAATGAAGGACTTCTTGGAGGCAGAGGCCACGTCA
GGCCATCTTGGACCGCTTCCCCCTGGTAATCGCACGGACCTGGAAAGTGG
CGAGCTATGGAGTTATTTGAATGGTCTGGGACAGGGGCCAGTGCGCTGGA
ACCCTTTCAAGGTGTGTGTGGCTTTTACTGAGACTCCGGGCAAGGCCGTA
GAGGAGCATTCGAAGGAGCAGCAGGAGAGGTTGGACTTGTTTTGTGGGAA
GCGAGAGCCAGTATTTTATGATAAGGCGATGCAGGAGGCCAAGGTGATTC
ATTTCGGGTCGGGCGAGGACATGCGTGTGTTGGCGCATTTTTACACTTTC
GAGCACTTCATGGACCCGGCTTTGGATAAGGCGGTGAAACGATTTGTCAG
AAACTACATACATTACCGCGACGAGGTCTTTTGCGCGGCCGGCCGGATCA
TTGCGGCAATGGAGACAGCTGCTGGCCCCGGGGGATTCAAAGCCCTCCAC
ATTCGCCGGGGAGACTTGCAATTTAAGGAGGTCAAGATCCCTGCAGAAGA
GATCATTGAGACCACCAAGGATATTTTGAATGAGGGGGAGACGATTTACG
TTGCCACGGACGAGAAGGACGCGGCTTATTTGGATGTGCTAAGGGCGCGA
TTTAATGTGTATTTTTTGAATGATTTCCACGAGAGGGTGGGTTTGGGGAA
GCTAAATCAGAATTATATGGGCATGGTGGAGCAGATTGTGTGCTCGCGGT
CGCAGGTCTTCATTGGGACGTGGTTCTCGACGTTCACGGGGTATATTACC
CGGATGCGCGGGTACAATGGGTTTGATTATCGCTCGAATTGGTATCATTA
TAGTCTGCGGAAAGACTCGTTTCAGACGGAGTACTACTCACGGGACCCCT
GGTATGTCCGTGAATGGCCGGAAGGATGGGTGGATATTGATTAA
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Synonyms
Publications