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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:547949..550138 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G01910.1 vs.
Match: EWM30443.1 (fucosyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 819.7 bits (2116), Expect = 5.900e-234 Identity = 409/582 (70.27%), Postives = 455/582 (78.18%), Query Frame = 0
Query: 16 EGSADFPDASGAGSDFEDSSLSSSLRKEAAESWPNCVGRGAWVLTFLLLVAGVVGFSMVAFSQGLLEPVGQHSPLATLRGATNSKSLAPAELRVAASRNSANDNAAAPSLPSDNAEKKKKTKKKDIFNSVEAVDKVWVDEEENPFDKDWETFPPSELADHCGVSDIFYWQRYDEEILAAAAADGAAVEVKNPWAKLGPERKYVTFEPDHGGWNNIRMAMEVVLVFAYATGRTLVMPPEQGMYLLNKGDAPDDNKLHFSDFFYLNRLREKMEMIEMKDFLEAEATSGHLGPLPPGNRTDLESGELWSYLNGLGQGPVRWNPFKVCVAFTETPGKAVEEHSKEQQERLDLFCGKREPVFYDKAMQEAKVIHFGSGEDMRVLAHFYTFEHFMDPALDKAVKRFVRNYIHYRDEVFCAAGRIIAAMETAAGPGGFKALHIRRGDLQFKEVKIPAEEIIETTKDILNEGETIYVATDEKDAAYLDVLRARFNVYFLNDFHERVGLGKLNQNYMGMVEQIVCSRSQVFIGTWFSTFTGYITRMRGYNGFDYRSNWYHYSLRKDSFQTEYYSRDPWYVREWPEGWVDID 598
E S+D+ DASG+ SD EDSS+ KE+ W NC GR WVL L+ VA +GF MV+FSQ +P A LRG + +AP L D A +P ++KK KKKD+FNSV +VDKVWVDEE NPFDK+WE FPPSELADHCG SDIFYWQRYD ++ +V NPWA LGPE+KYVTFEPD GGWNNIRMAMEVVLVFAYATGRTLVMPPEQ MYLLNKG P DN LHF+DFFYL+RL+EKMEMIEMKDFLE EA +G+LG LPP N TDL LW YL GL G W PF VC+AF ETPGK +E+HS EQQERL FCGKR PV Y++ +Q+AKVIHFG+G+ RVLAHFYTFEHFMDPALD+AVKRFVR+YIHYRDEVFCAAGRIIAAMET AGPGG+KALHIRRGDLQFKEVKIPAE+II TKDIL E ETIY+ATDE D AYLDV R RFNV+FL DFHERVGL KLNQNYMGM+EQIVCSRSQVFIGTWFSTFTGYITRMRGY GFDYR+NWYH+ LRKDSFQTEY+ RDPWYVREWPEGWV+ID
Sbjct: 12 EESSDYVDASGSDSD-EDSSVLGHGLKESQAEWLNCTGRRPWVL--LVFVASAIGFVMVSFSQETTVSSRSFTPFAALRGVY-PRMVAPPVL---------GDAAISP--------REKKIKKKDVFNSVNSVDKVWVDEEANPFDKNWEKFPPSELADHCGASDIFYWQRYDPDL----------EKVVNPWAALGPEKKYVTFEPDRGGWNNIRMAMEVVLVFAYATGRTLVMPPEQNMYLLNKGSDPGDNTLHFADFFYLHRLQEKMEMIEMKDFLETEAVTGNLGALPPSNSTDLRRDVLWKYLEGLEVGTTHWKPFDVCLAFPETPGKPIEDHSAEQQERLKEFCGKRTPVHYNETLQDAKVIHFGAGQGSRVLAHFYTFEHFMDPALDRAVKRFVRSYIHYRDEVFCAAGRIIAAMETEAGPGGYKALHIRRGDLQFKEVKIPAEKIIANTKDILKENETIYIATDETDEAYLDVFRKRFNVFFLKDFHERVGLPKLNQNYMGMLEQIVCSRSQVFIGTWFSTFTGYITRMRGYYGFDYRTNWYHFGLRKDSFQTEYHPRDPWYVREWPEGWVNID 562
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G01910.1 ID=NO02G01910.1|Name=NO02G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1956bp ACAGCCGCCGCCACAATGCGACGTCGGCCTGTCGAGGATGATGACACCAG CGATCATTCAGAAGGCTCAGCAGATTTTCCCGATGCCTCAGGTGCGGGCT CAGACTTCGAGGACAGCTCTCTCTCTAGCAGCCTGCGGAAAGAAGCAGCT GAGAGCTGGCCCAACTGCGTTGGGCGTGGCGCATGGGTCCTGACCTTCTT GCTCCTGGTCGCGGGTGTGGTGGGCTTTAGCATGGTAGCCTTTTCTCAAG GTCTATTGGAGCCGGTAGGGCAGCACAGCCCTTTGGCGACCTTACGGGGT GCGACTAACTCAAAGAGCTTGGCCCCCGCGGAGCTGCGCGTGGCTGCAAG CCGCAACAGCGCGAATGATAACGCAGCAGCACCATCCTTACCATCTGACA ATGCCGAAAAGAAGAAAAAGACTAAGAAAAAGGATATATTCAATAGCGTG GAGGCCGTCGACAAGGTGTGGGTGGATGAGGAGGAAAATCCCTTTGACAA GGACTGGGAGACGTTCCCCCCCTCCGAGCTCGCGGACCACTGCGGTGTCT CGGATATTTTCTACTGGCAGCGTTACGATGAAGAGATCTTGGCTGCTGCC GCCGCAGACGGGGCGGCGGTGGAGGTGAAGAACCCTTGGGCAAAGTTGGG ACCGGAGAGGAAGTATGTGACGTTTGAGCCGGACCATGGGGGGTGGAATA ACATCCGAATGGCTATGGAGGTCGTCTTAGTTTTCGCTTATGCTACTGGA CGAACGTTGGTAATGCCACCGGAGCAAGGAATGTATCTATTGAACAAGGG CGATGCCCCCGACGACAATAAGTTACACTTTTCTGACTTCTTTTACTTGA ACCGGCTGCGGGAGAAGATGGAGATGATCGAAATGAAGGACTTCTTGGAG GCAGAGGCCACGTCAGGCCATCTTGGACCGCTTCCCCCTGGTAATCGCAC GGACCTGGAAAGTGGCGAGCTATGGAGTTATTTGAATGGTCTGGGACAGG GGCCAGTGCGCTGGAACCCTTTCAAGGTGTGTGTGGCTTTTACTGAGACT CCGGGCAAGGCCGTAGAGGAGCATTCGAAGGAGCAGCAGGAGAGGTTGGA CTTGTTTTGTGGGAAGCGAGAGCCAGTATTTTATGATAAGGCGATGCAGG AGGCCAAGGTGATTCATTTCGGGTCGGGCGAGGACATGCGTGTGTTGGCG CATTTTTACACTTTCGAGCACTTCATGGACCCGGCTTTGGATAAGGCGGT GAAACGATTTGTCAGAAACTACATACATTACCGCGACGAGGTCTTTTGCG CGGCCGGCCGGATCATTGCGGCAATGGAGACAGCTGCTGGCCCCGGGGGA TTCAAAGCCCTCCACATTCGCCGGGGAGACTTGCAATTTAAGGAGGTCAA GATCCCTGCAGAAGAGATCATTGAGACCACCAAGGATATTTTGAATGAGG GGGAGACGATTTACGTTGCCACGGACGAGAAGGACGCGGCTTATTTGGAT GTGCTAAGGGCGCGATTTAATGTGTATTTTTTGAATGATTTCCACGAGAG GGTGGGTTTGGGGAAGCTAAATCAGAATTATATGGGCATGGTGGAGCAGA TTGTGTGCTCGCGGTCGCAGGTCTTCATTGGGACGTGGTTCTCGACGTTC ACGGGGTATATTACCCGGATGCGCGGGTACAATGGGTTTGATTATCGCTC GAATTGGTATCATTATAGTCTGCGGAAAGACTCGTTTCAGACGGAGTACT ACTCACGGGACCCCTGGTATGTCCGTGAATGGCCGGAAGGATGGGTGGAT ATTGATTAATCGGAGACATGATTAGGAATGGAGGGCGGTGGGGAGGAGGA TAGAGGAAGAAGGAGGATGCAGGGAAAGTATGCATGCATGTAAACCAAGG GAAAAAGAGGGAACACAAGAAAAAGAAAAAATAAGTCGACAATAGAATCA AGAAGC back to topprotein sequence of NO02G01910.1 >NO02G01910.1-protein ID=NO02G01910.1-protein|Name=NO02G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=598bp MRRRPVEDDDTSDHSEGSADFPDASGAGSDFEDSSLSSSLRKEAAESWPN CVGRGAWVLTFLLLVAGVVGFSMVAFSQGLLEPVGQHSPLATLRGATNSK SLAPAELRVAASRNSANDNAAAPSLPSDNAEKKKKTKKKDIFNSVEAVDK VWVDEEENPFDKDWETFPPSELADHCGVSDIFYWQRYDEEILAAAAADGA AVEVKNPWAKLGPERKYVTFEPDHGGWNNIRMAMEVVLVFAYATGRTLVM PPEQGMYLLNKGDAPDDNKLHFSDFFYLNRLREKMEMIEMKDFLEAEATS GHLGPLPPGNRTDLESGELWSYLNGLGQGPVRWNPFKVCVAFTETPGKAV EEHSKEQQERLDLFCGKREPVFYDKAMQEAKVIHFGSGEDMRVLAHFYTF EHFMDPALDKAVKRFVRNYIHYRDEVFCAAGRIIAAMETAAGPGGFKALH IRRGDLQFKEVKIPAEEIIETTKDILNEGETIYVATDEKDAAYLDVLRAR FNVYFLNDFHERVGLGKLNQNYMGMVEQIVCSRSQVFIGTWFSTFTGYIT RMRGYNGFDYRSNWYHYSLRKDSFQTEYYSRDPWYVREWPEGWVDID* back to topmRNA from alignment at chr2:547949..550138- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G01910.1 ID=NO02G01910.1|Name=NO02G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp|location=Sequence derived from alignment at chr2:547949..550138- (Nannochloropsis oceanica) ACAGCCGCCGCCACAATGCGACGTCGGCCTGTCGAGGATGATGACACCAG
CGATCATTCAGAAGGCTCAGCAGATTTTCCCGATGCCTCAGGTGCGGGCT
CAGACTTCGAGGACAGCTCTCTCTCTAGCAGCCTGCGGAAAGAAGCAGCT
GAGAGCTGGCCCAACTGCGTTGGGCGTGGCGCATGGGTCCTGACCTTCTT
GCTCCTGGTCGCGGGTGTGGTGGGCTTTAGCATGGTAGCCTTTTCTCAAG
GTCTATTGGAGCCGGTAGGGCAGCACAGCCCTTTGGCGACCTTACGGGGT
GCGACTAACTCAAAGAGCTTGGCCCCCGCGGAGCTGCGCGTGGCTGCAAG
CCGCAACAGCGCGAATGATAACGCAGCAGCACCATCCTTACCATCTGACA
ATGCCGAAAAGAAGAAAAAGACTAAGAAAAAGGATATATTCAATAGCGTG
GAGGCCGTCGACAAGGTGTGGGTGGATGAGGAGGAAAATCCCTTTGACAA
GGACTGGGAGACGTTCCCCCCCTCCGAGCTCGCGGACCACTGCGGTGTCT
CGGATATTTTCTACTGGCAGCGTTACGATGAAGAGATCTTGGCTGCTGCC
GCCGCAGACGGGGCGGCGGTGGAGGTGAAGAACCCTTGGGCAAAGTTGGG
ACCGGAGAGGAAGTATGTGACGTTTGAGCCGGACCATGGGGGGTGGAATA
ACATCCGAATGGCTATGGAGGTCGTCTTAGTTTTCGCTTATGCTACTGGA
CGAACGTTGGTAATGCCACCGGAGCAAGGAATGTATCTATTGAACAAGGG
CGATGCCCCCGACGACAATAAGTTACACTTTTCTGACTTCTTTTACTTGA
ACCGGCTGCGGGAGAAGATGGAGATGATCGAAATGAAGGACTTCTTGGAG
GCAGAGGCCACGTCAGGCCATCTTGGACCGCTTCCCCCTGGTAATCGCAC
GGACCTGGAAAGTGGCGAGCTATGGAGTTATTTGAATGGTCTGGGACAGG
GGCCAGTGCGCTGGAACCCTTTCAAGGTGTGTGTGGCTTTTACTGAGACT
CCGGGCAAGGCCGTAGAGGAGCATTCGAAGGAGCAGCAGGAGAGGTTGGA
CTTGTTTTGTGGGAAGCGAGAGCCAGTATTTTATGATAAGGCGATGCAGG
AGGCCAAGGTGATTCATTTCGGGTCGGGCGAGGACATGCGTGTGTTGGCG
CATTTTTACACTTTCGAGCACTTCATGGACCCGGCTTTGGATAAGGCGGT
GAAACGATTTGTCAGGTATGACTGTATGGACAGAGGGACAGAAGAAGAGG
GTGATTATAAAGGTTTGTGGGATAGATGCTTTGTATTGAATTGAATGGAA
CGTCCCCGGACTTGACAGCTGCACGCCCTCCTCCTGTGTGTGCATTCTCT
TTTTTTCCGTCCTCCCTCCCTCCAATAGGACACCTTTCACACGACCCACA
CATAAACATATGTTGCCACTTTCTTTATGTGTTCCCCTTTACCATACAGA
AACTACATACATTACCGCGACGAGGTCTTTTGCGCGGCCGGCCGGATCAT
TGCGGCAATGGAGACAGCTGCTGGCCCCGGGGGATTCAAAGCCCTCCACA
TTCGCCGGGGAGACTTGCAATTTAAGGAGGTCAAGATCCCTGCAGAAGAG
ATCATTGAGACCACCAAGGATATTTTGAATGAGGGGGAGACGATTTACGT
TGCCACGGACGAGAAGGACGCGGCTTATTTGGATGTGCTAAGGGCGCGAT
TTAATGTGTATTTTTTGAATGATTTCCACGAGAGGGTGGGTTTGGGGAAG
CTAAATCAGAATTATATGGGCATGGTGGAGCAGATTGTGTGCTCGCGGTC
GCAGGTCTTCATTGGGACGTGGTTCTCGACGTTCACGGGGTATATTACCC
GGATGCGCGGGTACAATGGGTTTGATTATCGCTCGAATTGGTATCATTAT
AGTCTGCGGAAAGACTCGTTTCAGACGGAGTACTACTCACGGGACCCCTG
GTATGTCCGTGAATGGCCGGAAGGATGGGTGGATATTGATTAATCGGAGA
CATGATTAGGAATGGAGGGCGGTGGGGAGGAGGATAGAGGAAGAAGGAGG
ATGCAGGGAAAGTATGCATGCATGTAAACCAAGGGAAAAAGAGGGAACAC
AAGAAAAAGAAAAAATAAGTCGACAATAGAATCAAGAAGC back to topCoding sequence (CDS) from alignment at chr2:547949..550138- >NO02G01910.1 ID=NO02G01910.1|Name=NO02G01910.1|organism=Nannochloropsis oceanica|type=CDS|length=1794bp|location=Sequence derived from alignment at chr2:547949..550138- (Nannochloropsis oceanica) ATGCGACGTCGGCCTGTCGAGGATGATGACACCAGCGATCATTCAGAAGG CTCAGCAGATTTTCCCGATGCCTCAGGTGCGGGCTCAGACTTCGAGGACA GCTCTCTCTCTAGCAGCCTGCGGAAAGAAGCAGCTGAGAGCTGGCCCAAC TGCGTTGGGCGTGGCGCATGGGTCCTGACCTTCTTGCTCCTGGTCGCGGG TGTGGTGGGCTTTAGCATGGTAGCCTTTTCTCAAGGTCTATTGGAGCCGG TAGGGCAGCACAGCCCTTTGGCGACCTTACGGGGTGCGACTAACTCAAAG AGCTTGGCCCCCGCGGAGCTGCGCGTGGCTGCAAGCCGCAACAGCGCGAA TGATAACGCAGCAGCACCATCCTTACCATCTGACAATGCCGAAAAGAAGA AAAAGACTAAGAAAAAGGATATATTCAATAGCGTGGAGGCCGTCGACAAG GTGTGGGTGGATGAGGAGGAAAATCCCTTTGACAAGGACTGGGAGACGTT CCCCCCCTCCGAGCTCGCGGACCACTGCGGTGTCTCGGATATTTTCTACT GGCAGCGTTACGATGAAGAGATCTTGGCTGCTGCCGCCGCAGACGGGGCG GCGGTGGAGGTGAAGAACCCTTGGGCAAAGTTGGGACCGGAGAGGAAGTA TGTGACGTTTGAGCCGGACCATGGGGGGTGGAATAACATCCGAATGGCTA TGGAGGTCGTCTTAGTTTTCGCTTATGCTACTGGACGAACGTTGGTAATG CCACCGGAGCAAGGAATGTATCTATTGAACAAGGGCGATGCCCCCGACGA CAATAAGTTACACTTTTCTGACTTCTTTTACTTGAACCGGCTGCGGGAGA AGATGGAGATGATCGAAATGAAGGACTTCTTGGAGGCAGAGGCCACGTCA GGCCATCTTGGACCGCTTCCCCCTGGTAATCGCACGGACCTGGAAAGTGG CGAGCTATGGAGTTATTTGAATGGTCTGGGACAGGGGCCAGTGCGCTGGA ACCCTTTCAAGGTGTGTGTGGCTTTTACTGAGACTCCGGGCAAGGCCGTA GAGGAGCATTCGAAGGAGCAGCAGGAGAGGTTGGACTTGTTTTGTGGGAA GCGAGAGCCAGTATTTTATGATAAGGCGATGCAGGAGGCCAAGGTGATTC ATTTCGGGTCGGGCGAGGACATGCGTGTGTTGGCGCATTTTTACACTTTC GAGCACTTCATGGACCCGGCTTTGGATAAGGCGGTGAAACGATTTGTCAG AAACTACATACATTACCGCGACGAGGTCTTTTGCGCGGCCGGCCGGATCA TTGCGGCAATGGAGACAGCTGCTGGCCCCGGGGGATTCAAAGCCCTCCAC ATTCGCCGGGGAGACTTGCAATTTAAGGAGGTCAAGATCCCTGCAGAAGA GATCATTGAGACCACCAAGGATATTTTGAATGAGGGGGAGACGATTTACG TTGCCACGGACGAGAAGGACGCGGCTTATTTGGATGTGCTAAGGGCGCGA TTTAATGTGTATTTTTTGAATGATTTCCACGAGAGGGTGGGTTTGGGGAA GCTAAATCAGAATTATATGGGCATGGTGGAGCAGATTGTGTGCTCGCGGT CGCAGGTCTTCATTGGGACGTGGTTCTCGACGTTCACGGGGTATATTACC CGGATGCGCGGGTACAATGGGTTTGATTATCGCTCGAATTGGTATCATTA TAGTCTGCGGAAAGACTCGTTTCAGACGGAGTACTACTCACGGGACCCCT GGTATGTCCGTGAATGGCCGGAAGGATGGGTGGATATTGATTAA back to top
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