NO02G01880.1, NO02G01880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01880.1
Unique NameNO02G01880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1206
Alignment locationchr2:541245..542450 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:541245..542450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01880.1 vs.
Match: EWM30520.1 (metallo-beta-lactamase family protein [Nannochloropsis gaditana])

HSP 1 Score: 534.6 bits (1376), Expect = 2.600e-148
Identity = 270/392 (68.88%), Postives = 310/392 (79.08%), Query Frame = 0 
Query:   10 AVRRRRQCSGPLILSFSVLLLSTTVAAFYSSSLSRVPRHHNQQQQRRLHRHYTITTMRAHNKEEGPGNAEEANLYVDRSCTGCGTCRSLCPGVFGALGLRTVVERKPLDEIETRAAYRAMVTCPLGAIRLRKPDPLVKEVVTHDFPTPLDPVALPGVHLLGYHNRESMGTTPYLIVREGGAGNIMIDAPRFNGRLAMQIEALGGIRYNIVTHEGAAPHHDLWHAFFPTSERVVHRMDVTREMKGQVEAMLQGKGPWFIDDDIKIVALPGYSAGAVGVIYYPPPSQSSSISGSISIIISSSRNNGGILFSGRTIGWSPRLNRLDGFAQFSRGSLGKQAESIKALAKEDFEWILPSEGLKYRLPEGGRKDAKERLLTEAADRFSELGRVGGLSM 402
            A R+RR+CS     SF  L   +  +AF++     +P  H   ++ R       T MRA  KEE  GNA +ANLYVDRSC+GCGTCRS+CPGVFG LGL++VVER+PLD+ ETRAAYRAMVTCP+GAIRLRKPDPLVKEVV HDFPTPLDPVALPGV+ LGYHNRESMG TPYLIVR+ G GNIMIDAPRFNGRLA QIE+LGG+RY IVTHEG+APHHDLWHAFFP+SERVVHRMDVTREM+GQVEA+LQGKGPW IDDD+KIVALPGYS G++GV+++P    S+ I           RN  GILFSGRT+GWS RLNRLDGFAQFSRGSL KQA SIK L KEDF WILP+EGLK+ LP GG  + +ERLL EAA+ F   GRVGGL++
Sbjct:    8 ARRKRRKCSH-FFFSFLFLANFSVTSAFHTM----LPSMHRPVKETRRR-----TLMRARAKEESLGNAVDANLYVDRSCSGCGTCRSICPGVFGDLGLQSVVEREPLDKNETRAAYRAMVTCPMGAIRLRKPDPLVKEVVMHDFPTPLDPVALPGVYFLGYHNRESMGVTPYLIVRDNGEGNIMIDAPRFNGRLAQQIESLGGVRYMIVTHEGSAPHHDLWHAFFPSSERVVHRMDVTREMRGQVEAILQGKGPWRIDDDVKIVALPGYSPGSIGVLFHPSSVSSNGIEEDSKWGKDGERN--GILFSGRTLGWSARLNRLDGFAQFSRGSLRKQAASIKGLGKEDFAWILPAEGLKFHLPGGGNAETRERLLAEAAELFLARGRVGGLNV 387
The following BLAST results are available for this feature:
BLAST of NO02G01880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30520.12.600e-14868.88metallo-beta-lactamase family protein [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01880NO02G01880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01880.1NO02G01880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01880.1.cds1NO02G01880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01880.1 ID=NO02G01880.1|Name=NO02G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1206bp
ATGACATCGGTCGTGTTACAAAGGCCCGCAGTCAGAAGAAGAAGACAATG
CAGCGGCCCCCTTATCCTCTCTTTTTCCGTCCTCCTCCTCTCCACCACCG
TAGCCGCCTTCTACTCCTCCTCCTTGTCCAGGGTTCCGCGGCACCACAAT
CAGCAGCAACAACGACGCCTCCATCGGCATTACACGATCACAACAATGCG
TGCCCACAACAAGGAAGAAGGGCCTGGCAACGCCGAAGAGGCAAACTTGT
ACGTCGACCGAAGCTGCACTGGATGCGGGACCTGCCGGAGCCTCTGCCCT
GGAGTGTTCGGTGCCTTGGGCTTACGCACTGTGGTCGAGCGAAAGCCCTT
GGATGAAATCGAAACAAGGGCTGCGTATCGTGCCATGGTTACTTGTCCTC
TAGGAGCTATTCGTCTACGTAAGCCTGACCCGTTGGTCAAAGAGGTGGTG
ACGCATGATTTTCCTACTCCTCTCGATCCGGTGGCTTTGCCTGGGGTGCA
TTTACTGGGGTATCACAATCGAGAGAGCATGGGGACGACGCCTTATTTGA
TTGTGCGGGAGGGAGGGGCGGGAAACATAATGATTGATGCTCCTAGATTC
AACGGCAGGTTAGCAATGCAGATTGAAGCGCTTGGGGGGATCAGGTACAA
TATCGTGACTCATGAAGGCGCGGCTCCACACCATGACTTATGGCATGCAT
TTTTCCCGACGTCGGAAAGGGTGGTTCATCGGATGGATGTGACGAGGGAA
ATGAAGGGGCAGGTGGAGGCAATGCTGCAGGGGAAGGGTCCCTGGTTCAT
TGATGATGACATCAAGATAGTGGCCTTACCTGGCTATTCTGCTGGGGCGG
TTGGAGTTATTTACTACCCCCCACCATCACAGAGCAGTAGTATCAGTGGA
AGTATCAGCATCATCATCAGCAGCAGCAGGAATAATGGTGGCATCTTGTT
CAGCGGTCGTACCATTGGCTGGTCTCCGCGCTTGAACCGTCTGGACGGCT
TCGCCCAATTTTCCCGGGGTAGCCTCGGCAAACAAGCAGAGAGCATCAAA
GCTCTGGCAAAAGAAGACTTCGAATGGATTCTACCTTCTGAAGGACTCAA
GTACCGGTTGCCAGAAGGAGGGAGGAAGGATGCAAAAGAGCGACTGTTGA
CGGAGGCGGCGGATAGGTTTTCGGAGCTAGGGCGGGTGGGCGGGTTGAGC
ATGTAG
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protein sequence of NO02G01880.1

>NO02G01880.1-protein ID=NO02G01880.1-protein|Name=NO02G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MTSVVLQRPAVRRRRQCSGPLILSFSVLLLSTTVAAFYSSSLSRVPRHHN
QQQQRRLHRHYTITTMRAHNKEEGPGNAEEANLYVDRSCTGCGTCRSLCP
GVFGALGLRTVVERKPLDEIETRAAYRAMVTCPLGAIRLRKPDPLVKEVV
THDFPTPLDPVALPGVHLLGYHNRESMGTTPYLIVREGGAGNIMIDAPRF
NGRLAMQIEALGGIRYNIVTHEGAAPHHDLWHAFFPTSERVVHRMDVTRE
MKGQVEAMLQGKGPWFIDDDIKIVALPGYSAGAVGVIYYPPPSQSSSISG
SISIIISSSRNNGGILFSGRTIGWSPRLNRLDGFAQFSRGSLGKQAESIK
ALAKEDFEWILPSEGLKYRLPEGGRKDAKERLLTEAADRFSELGRVGGLS
M*
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mRNA from alignment at chr2:541245..542450-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01880.1 ID=NO02G01880.1|Name=NO02G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1206bp|location=Sequence derived from alignment at chr2:541245..542450- (Nannochloropsis oceanica)
ATGACATCGGTCGTGTTACAAAGGCCCGCAGTCAGAAGAAGAAGACAATG
CAGCGGCCCCCTTATCCTCTCTTTTTCCGTCCTCCTCCTCTCCACCACCG
TAGCCGCCTTCTACTCCTCCTCCTTGTCCAGGGTTCCGCGGCACCACAAT
CAGCAGCAACAACGACGCCTCCATCGGCATTACACGATCACAACAATGCG
TGCCCACAACAAGGAAGAAGGGCCTGGCAACGCCGAAGAGGCAAACTTGT
ACGTCGACCGAAGCTGCACTGGATGCGGGACCTGCCGGAGCCTCTGCCCT
GGAGTGTTCGGTGCCTTGGGCTTACGCACTGTGGTCGAGCGAAAGCCCTT
GGATGAAATCGAAACAAGGGCTGCGTATCGTGCCATGGTTACTTGTCCTC
TAGGAGCTATTCGTCTACGTAAGCCTGACCCGTTGGTCAAAGAGGTGGTG
ACGCATGATTTTCCTACTCCTCTCGATCCGGTGGCTTTGCCTGGGGTGCA
TTTACTGGGGTATCACAATCGAGAGAGCATGGGGACGACGCCTTATTTGA
TTGTGCGGGAGGGAGGGGCGGGAAACATAATGATTGATGCTCCTAGATTC
AACGGCAGGTTAGCAATGCAGATTGAAGCGCTTGGGGGGATCAGGTACAA
TATCGTGACTCATGAAGGCGCGGCTCCACACCATGACTTATGGCATGCAT
TTTTCCCGACGTCGGAAAGGGTGGTTCATCGGATGGATGTGACGAGGGAA
ATGAAGGGGCAGGTGGAGGCAATGCTGCAGGGGAAGGGTCCCTGGTTCAT
TGATGATGACATCAAGATAGTGGCCTTACCTGGCTATTCTGCTGGGGCGG
TTGGAGTTATTTACTACCCCCCACCATCACAGAGCAGTAGTATCAGTGGA
AGTATCAGCATCATCATCAGCAGCAGCAGGAATAATGGTGGCATCTTGTT
CAGCGGTCGTACCATTGGCTGGTCTCCGCGCTTGAACCGTCTGGACGGCT
TCGCCCAATTTTCCCGGGGTAGCCTCGGCAAACAAGCAGAGAGCATCAAA
GCTCTGGCAAAAGAAGACTTCGAATGGATTCTACCTTCTGAAGGACTCAA
GTACCGGTTGCCAGAAGGAGGGAGGAAGGATGCAAAAGAGCGACTGTTGA
CGGAGGCGGCGGATAGGTTTTCGGAGCTAGGGCGGGTGGGCGGGTTGAGC
ATGTAG
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Coding sequence (CDS) from alignment at chr2:541245..542450-

>NO02G01880.1 ID=NO02G01880.1|Name=NO02G01880.1|organism=Nannochloropsis oceanica|type=CDS|length=1206bp|location=Sequence derived from alignment at chr2:541245..542450- (Nannochloropsis oceanica)
ATGACATCGGTCGTGTTACAAAGGCCCGCAGTCAGAAGAAGAAGACAATG
CAGCGGCCCCCTTATCCTCTCTTTTTCCGTCCTCCTCCTCTCCACCACCG
TAGCCGCCTTCTACTCCTCCTCCTTGTCCAGGGTTCCGCGGCACCACAAT
CAGCAGCAACAACGACGCCTCCATCGGCATTACACGATCACAACAATGCG
TGCCCACAACAAGGAAGAAGGGCCTGGCAACGCCGAAGAGGCAAACTTGT
ACGTCGACCGAAGCTGCACTGGATGCGGGACCTGCCGGAGCCTCTGCCCT
GGAGTGTTCGGTGCCTTGGGCTTACGCACTGTGGTCGAGCGAAAGCCCTT
GGATGAAATCGAAACAAGGGCTGCGTATCGTGCCATGGTTACTTGTCCTC
TAGGAGCTATTCGTCTACGTAAGCCTGACCCGTTGGTCAAAGAGGTGGTG
ACGCATGATTTTCCTACTCCTCTCGATCCGGTGGCTTTGCCTGGGGTGCA
TTTACTGGGGTATCACAATCGAGAGAGCATGGGGACGACGCCTTATTTGA
TTGTGCGGGAGGGAGGGGCGGGAAACATAATGATTGATGCTCCTAGATTC
AACGGCAGGTTAGCAATGCAGATTGAAGCGCTTGGGGGGATCAGGTACAA
TATCGTGACTCATGAAGGCGCGGCTCCACACCATGACTTATGGCATGCAT
TTTTCCCGACGTCGGAAAGGGTGGTTCATCGGATGGATGTGACGAGGGAA
ATGAAGGGGCAGGTGGAGGCAATGCTGCAGGGGAAGGGTCCCTGGTTCAT
TGATGATGACATCAAGATAGTGGCCTTACCTGGCTATTCTGCTGGGGCGG
TTGGAGTTATTTACTACCCCCCACCATCACAGAGCAGTAGTATCAGTGGA
AGTATCAGCATCATCATCAGCAGCAGCAGGAATAATGGTGGCATCTTGTT
CAGCGGTCGTACCATTGGCTGGTCTCCGCGCTTGAACCGTCTGGACGGCT
TCGCCCAATTTTCCCGGGGTAGCCTCGGCAAACAAGCAGAGAGCATCAAA
GCTCTGGCAAAAGAAGACTTCGAATGGATTCTACCTTCTGAAGGACTCAA
GTACCGGTTGCCAGAAGGAGGGAGGAAGGATGCAAAAGAGCGACTGTTGA
CGGAGGCGGCGGATAGGTTTTCGGAGCTAGGGCGGGTGGGCGGGTTGAGC
ATGTAG
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Synonyms
Publications