NO02G01860.1, NO02G01860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01860.1
Unique NameNO02G01860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1086
Alignment locationchr2:537956..539041 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:537956..539041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G01860.1 vs.
Match: XP_005856199.1 (glucuronyl/N-acetylglucosaminyl transferase EXT2 [Nannochloropsis gaditana CCMP526]; EKU20149.1 glucuronyl/N-acetylglucosaminyl transferase EXT2 [Nannochloropsis gaditana CCMP526]; EWM30464.1 EXTL2, alpha-1,4-N-acetylhexosaminyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 505.0 bits (1299), Expect = 2.000e-139
Identity = 252/368 (68.48%), Postives = 284/368 (77.17%), Query Frame = 0
Query:    1 MRRPYHRV-GRGTLDGLESGGRIDPIDLPFSWWRLRGCSSRSFYMLSAVLIVGCLVLHLTHLALQTAFQVELLPATSRTGGVYGSTYTIRVNSFRRNDMLKGFLQHFATCPNVEAIHVVWSDQENKPPSMADWALPLTSDQLEKVQFEEQPTDSLNNRFRVLLPVPTPAVLSLDDDLVIPCGTLDFAFSVWQAAPHSLVGFTPRLITWDAGTSATAAEG----ETEGNEGGSGSLG--GSYRYQSSFKYVWWHGRYNLILTKCCFLHREFLSLYFSSLSSATLDYIDQKRNCEDIAMQFVVSNHTGCAPPVWVQAKVTDHGQTSGISQGQDHANERSACVGRLVKEFGHLPLTTTAHKAVDARGKWLW 362
            MRRP HRV G    DGLE G R D         R RG S++  Y L AV IVGCL+LHL+H ALQ  F+V+ LP TS TGG +GSTYTIRVN+FRRNDMLK FL HFA CPNV+AI V+WSDQ   PPS+ DWA+PL++ +L KV FE QPTDSLNNRFR LLPVPTPAVLSLDDDLVIPC TLDFA+S+WQAAP SLVGFTPRL+TWD  T++    G    E E  EG     G  GSYRY SSFK+VWWHGRYN+ILTKCCFLHR+FLSLYFSSL+   L YID +RNCEDIAMQFVV+NHT  APPVWVQA+ TD+GQ SGISQG+DHA ER ACVGRLVKEFG L LTTT+ KA+DAR  W+W
Sbjct:    1 MRRPNHRVAGWKPFDGLECGRRTDNNCFLSLASRFRGWSTKKCYYLFAVFIVGCLLLHLSHTALQMNFRVDFLPTTSPTGGPFGSTYTIRVNTFRRNDMLKRFLGHFARCPNVQAIQVIWSDQGYDPPSLMDWAIPLSTQELSKVAFEVQPTDSLNNRFRALLPVPTPAVLSLDDDLVIPCETLDFAYSIWQAAPQSLVGFTPRLVTWDGETASGVVAGKKVTELEAGEGAGPGPGAAGSYRYLSSFKHVWWHGRYNVILTKCCFLHRDFLSLYFSSLTPEVLQYIDDRRNCEDIAMQFVVANHTRGAPPVWVQARFTDYGQKSGISQGEDHARERGACVGRLVKEFGSLCLTTTSLKAIDARRSWIW 368          
The following BLAST results are available for this feature:
BLAST of NO02G01860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856199.12.000e-13968.48glucuronyl/N-acetylglucosaminyl transferase EXT2 [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01860NO02G01860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01860.1NO02G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01860.1.cds1NO02G01860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01860.1 ID=NO02G01860.1|Name=NO02G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp
ATGCGACGTCCTTACCATCGCGTTGGCCGCGGAACCCTTGACGGACTGGA
AAGCGGTGGCCGTATCGACCCAATTGATTTACCATTCTCATGGTGGCGGT
TGCGCGGCTGCTCTTCCCGGAGTTTCTACATGTTGTCGGCCGTGCTGATA
GTCGGTTGCCTAGTCCTGCACCTTACCCACCTTGCCCTCCAAACAGCCTT
TCAAGTTGAGCTCCTCCCCGCAACTTCACGCACCGGCGGAGTCTACGGCA
GCACGTACACCATTCGTGTCAATTCATTCAGGCGGAACGACATGCTTAAG
GGCTTTTTGCAGCATTTCGCCACATGCCCCAACGTCGAGGCCATTCATGT
GGTTTGGTCCGACCAAGAAAACAAACCCCCTTCCATGGCTGATTGGGCCC
TTCCCCTAACCTCCGACCAATTAGAAAAAGTCCAGTTCGAAGAACAGCCG
ACTGACAGCCTGAATAATCGCTTTCGTGTCTTGCTGCCGGTGCCCACCCC
TGCCGTGTTGTCCTTGGACGATGACCTGGTAATTCCTTGTGGCACACTTG
ACTTCGCATTTTCTGTCTGGCAAGCCGCCCCTCACTCCCTCGTGGGCTTC
ACTCCCCGACTTATCACCTGGGATGCTGGCACCAGTGCCACTGCTGCGGA
AGGAGAGACGGAGGGGAATGAGGGAGGGAGTGGATCACTGGGGGGGAGCT
ACAGATATCAAAGCTCGTTTAAGTACGTCTGGTGGCATGGCCGGTACAAC
CTGATCCTGACGAAATGCTGCTTTCTCCACCGGGAATTCCTTTCACTATA
TTTCTCCTCTCTGTCCTCGGCGACCTTGGATTATATCGACCAAAAACGAA
ATTGTGAAGACATAGCGATGCAGTTTGTTGTTTCCAACCACACGGGTTGC
GCGCCCCCTGTATGGGTTCAGGCGAAAGTCACGGACCATGGCCAAACGTC
GGGGATAAGTCAGGGGCAGGATCATGCGAATGAGAGAAGTGCGTGTGTTG
GGAGGTTGGTAAAGGAGTTTGGGCACTTGCCGTTGACGACCACGGCGCAT
AAGGCGGTGGATGCGAGGGGGAAGTGGCTGTGGTAG
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protein sequence of NO02G01860.1

>NO02G01860.1-protein ID=NO02G01860.1-protein|Name=NO02G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MRRPYHRVGRGTLDGLESGGRIDPIDLPFSWWRLRGCSSRSFYMLSAVLI
VGCLVLHLTHLALQTAFQVELLPATSRTGGVYGSTYTIRVNSFRRNDMLK
GFLQHFATCPNVEAIHVVWSDQENKPPSMADWALPLTSDQLEKVQFEEQP
TDSLNNRFRVLLPVPTPAVLSLDDDLVIPCGTLDFAFSVWQAAPHSLVGF
TPRLITWDAGTSATAAEGETEGNEGGSGSLGGSYRYQSSFKYVWWHGRYN
LILTKCCFLHREFLSLYFSSLSSATLDYIDQKRNCEDIAMQFVVSNHTGC
APPVWVQAKVTDHGQTSGISQGQDHANERSACVGRLVKEFGHLPLTTTAH
KAVDARGKWLW*
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mRNA from alignment at chr2:537956..539041-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01860.1 ID=NO02G01860.1|Name=NO02G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp|location=Sequence derived from alignment at chr2:537956..539041- (Nannochloropsis oceanica)
ATGCGACGTCCTTACCATCGCGTTGGCCGCGGAACCCTTGACGGACTGGA AAGCGGTGGCCGTATCGACCCAATTGATTTACCATTCTCATGGTGGCGGT TGCGCGGCTGCTCTTCCCGGAGTTTCTACATGTTGTCGGCCGTGCTGATA GTCGGTTGCCTAGTCCTGCACCTTACCCACCTTGCCCTCCAAACAGCCTT TCAAGTTGAGCTCCTCCCCGCAACTTCACGCACCGGCGGAGTCTACGGCA GCACGTACACCATTCGTGTCAATTCATTCAGGCGGAACGACATGCTTAAG GGCTTTTTGCAGCATTTCGCCACATGCCCCAACGTCGAGGCCATTCATGT GGTTTGGTCCGACCAAGAAAACAAACCCCCTTCCATGGCTGATTGGGCCC TTCCCCTAACCTCCGACCAATTAGAAAAAGTCCAGTTCGAAGAACAGCCG ACTGACAGCCTGAATAATCGCTTTCGTGTCTTGCTGCCGGTGCCCACCCC TGCCGTGTTGTCCTTGGACGATGACCTGGTAATTCCTTGTGGCACACTTG ACTTCGCATTTTCTGTCTGGCAAGCCGCCCCTCACTCCCTCGTGGGCTTC ACTCCCCGACTTATCACCTGGGATGCTGGCACCAGTGCCACTGCTGCGGA AGGAGAGACGGAGGGGAATGAGGGAGGGAGTGGATCACTGGGGGGGAGCT ACAGATATCAAAGCTCGTTTAAGTACGTCTGGTGGCATGGCCGGTACAAC CTGATCCTGACGAAATGCTGCTTTCTCCACCGGGAATTCCTTTCACTATA TTTCTCCTCTCTGTCCTCGGCGACCTTGGATTATATCGACCAAAAACGAA ATTGTGAAGACATAGCGATGCAGTTTGTTGTTTCCAACCACACGGGTTGC GCGCCCCCTGTATGGGTTCAGGCGAAAGTCACGGACCATGGCCAAACGTC GGGGATAAGTCAGGGGCAGGATCATGCGAATGAGAGAAGTGCGTGTGTTG GGAGGTTGGTAAAGGAGTTTGGGCACTTGCCGTTGACGACCACGGCGCAT AAGGCGGTGGATGCGAGGGGGAAGTGGCTGTGGTAG
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Coding sequence (CDS) from alignment at chr2:537956..539041-

>NO02G01860.1 ID=NO02G01860.1|Name=NO02G01860.1|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at chr2:537956..539041- (Nannochloropsis oceanica)
ATGCGACGTCCTTACCATCGCGTTGGCCGCGGAACCCTTGACGGACTGGA
AAGCGGTGGCCGTATCGACCCAATTGATTTACCATTCTCATGGTGGCGGT
TGCGCGGCTGCTCTTCCCGGAGTTTCTACATGTTGTCGGCCGTGCTGATA
GTCGGTTGCCTAGTCCTGCACCTTACCCACCTTGCCCTCCAAACAGCCTT
TCAAGTTGAGCTCCTCCCCGCAACTTCACGCACCGGCGGAGTCTACGGCA
GCACGTACACCATTCGTGTCAATTCATTCAGGCGGAACGACATGCTTAAG
GGCTTTTTGCAGCATTTCGCCACATGCCCCAACGTCGAGGCCATTCATGT
GGTTTGGTCCGACCAAGAAAACAAACCCCCTTCCATGGCTGATTGGGCCC
TTCCCCTAACCTCCGACCAATTAGAAAAAGTCCAGTTCGAAGAACAGCCG
ACTGACAGCCTGAATAATCGCTTTCGTGTCTTGCTGCCGGTGCCCACCCC
TGCCGTGTTGTCCTTGGACGATGACCTGGTAATTCCTTGTGGCACACTTG
ACTTCGCATTTTCTGTCTGGCAAGCCGCCCCTCACTCCCTCGTGGGCTTC
ACTCCCCGACTTATCACCTGGGATGCTGGCACCAGTGCCACTGCTGCGGA
AGGAGAGACGGAGGGGAATGAGGGAGGGAGTGGATCACTGGGGGGGAGCT
ACAGATATCAAAGCTCGTTTAAGTACGTCTGGTGGCATGGCCGGTACAAC
CTGATCCTGACGAAATGCTGCTTTCTCCACCGGGAATTCCTTTCACTATA
TTTCTCCTCTCTGTCCTCGGCGACCTTGGATTATATCGACCAAAAACGAA
ATTGTGAAGACATAGCGATGCAGTTTGTTGTTTCCAACCACACGGGTTGC
GCGCCCCCTGTATGGGTTCAGGCGAAAGTCACGGACCATGGCCAAACGTC
GGGGATAAGTCAGGGGCAGGATCATGCGAATGAGAGAAGTGCGTGTGTTG
GGAGGTTGGTAAAGGAGTTTGGGCACTTGCCGTTGACGACCACGGCGCAT
AAGGCGGTGGATGCGAGGGGGAAGTGGCTGTGGTAG
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Synonyms
Publications