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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:531980..534612 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G01830.2 vs.
Match: EWM30515.1 (dhhc zinc finger domain containing protein [Nannochloropsis gaditana]) HSP 1 Score: 387.5 bits (994), Expect = 3.600e-104 Identity = 190/259 (73.36%), Postives = 217/259 (83.78%), Query Frame = 0
Query: 5 DLAFSTALVVACLSSFVVACSIPAGTITPSSWPTFDNYKADEIIYASGKECVTCKVPKLARSKHCRLCGVCQSRFDHHCGWLNQCVGELNYRHFLFFLALHSMTFFWGSSCLWEVLRKEMAEKQLWEAKFYSPSSGATVGATPVVVLQYLVVHEGAVCGVLALCFVMAVVLAGFLLYHLRLALRNITTNESFKWSAVRAHAKLARDHARRAHEASGGALPLRQIADPQNSYHISFVDNLKEVFFPRCERPCTGS-GRKA 263
DLA S ALV+ACL+SFVVACS+PAGTI+PS+W +DNYK D +IY +G+ C TC V KLARSKHCRLCGVCQSRFDHHCGWLNQCVGE+NYRHFLFFLALHS TF +GSS LW +LR+EM + +LW+A FYSPSSG TVG++P+VV QYLVVHEGAVCGVLAL FVMA+VLAGFLLYHL LA +N TTNE+FKW+ VR K+ R ARRAHEASGGALPLR+IADP NSY+IS +NL EV FPR ER S GRKA
Sbjct: 105 DLALSVALVLACLASFVVACSVPAGTISPSTWERYDNYKPDNVIYVAGRVCPTCDVVKLARSKHCRLCGVCQSRFDHHCGWLNQCVGEVNYRHFLFFLALHSCTFLYGSSRLWGILRREMIKNKLWDATFYSPSSGQTVGSSPLVVCQYLVVHEGAVCGVLALAFVMAIVLAGFLLYHLWLAGQNTTTNETFKWAEVRLKVKIERSQARRAHEASGGALPLRRIADPVNSYNISLYENLMEVLFPRSERRAQNSTGRKA 363
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G01830.2 ID=NO02G01830.2|Name=NO02G01830.2|organism=Nannochloropsis oceanica|type=mRNA|length=2456bp
AGCACCTTATAGCGGCGCTTGAGGTAGCTGGACCTCGAAAGAGGGAGGGC
GGGGCGCCCTGAAAAGCGGCGGAGAGCATCATTTTCACCTCGCACCATCG
CCTGGAGCCGGGAGGCTGAATCGTCCCAGGCCTGAGCCATGGAGATCATG
ACCATTTTAATTGTCTACATCGTCCTCGTTACATTCTTGGTCTGGGTTTG
CGTGGTAGCGGACCCCAACAGTGACTCATTAGGTACGTTTGTGTCTCTCT
AAGAGGGCACGCCGCCTCTGGGCTTGAATGAAGTGATGTCCCCCTTCCGG
GCTTGAATGAAGTGATGTAGGACACAGGGTACTAGAGTGAGAATCGTCAA
CTCTCTTGCTTCCTCTTCTCTTACTGCTAAGCAGCTTTATCTACTTATGT
ACTGCATAGTTATGCCTGTACGTCTAGCTCCAATTTTGATGTCGCCACTC
ATCCATTCACATTTAAGAGACCCACCCTCCTCCTCCCTCTTTCCCCACCT
ACGTCAATAACTCCATTCCAACACTAGGCGGCAAGCTCAACATCCTCCTT
ACCGAAGATCTTCCCGGATTACTCACCAAAAAGCTCCGCCGTTGCCTGCC
CTCCTCGCTCTTCGACTCACTCGCCCGCTCCTACGACTATGTGGTGAATC
AACGCAATCCCCTCCTCCAGCTCCTCTACCTCTTTCTTTACCTCGGCTCC
TTCGCCACCTTCATCTATGAAGGCTTGGGACGCATGGAGCCTATAGACTT
GGCCTTTTCTACCGCGTTGGTCGTTGCCTGTTTGTCTTCGTTTGTCGTAG
CGTGCTCGATCCCGGCGGGTACCATCACCCCGTCGAGCTGGCCAACCTTT
GACAATTACAAGGCGGACGAGATTATCTATGCTTCCGGAAAAGAGTGTGT
GACATGTAAGGTACCCAAATTGGCGAGGAGCAAGCATTGTCGTCTGTGTG
GGGTGTGTCAGTCGAGGTTTGATCACCACTGTGGGTGGTTAAACCAGTGC
GTGGGTGAGCTGAACTATAGACATTTTCTCTTCTTTTTGGCGTTGCACAG
CATGACTTTCTTTTGGGGAAGTTCGTGTTTATGGGAGGTGTTGAGGAAAG
AAATGGCAGAGAAACAATTGTGGGAGGCAAAATTCTATAGTCCGAGCTCT
GGGGCGACGGTGGGGGCGACCCCAGTGGTGGTGTTGCAATATCTTGTGGT
GCATGAAGGAGCAGTGTGTGGAGTGCTTGCATTGTGCTTTGTCATGGCTG
TGGTACTGGCGGGGTTTTTGTTGTATCACTTGCGTTTGGCCTTGAGAAAT
ATCACGACGAACGAGTCGTTTAAGTGGTCTGCGGTGAGGGCACATGCGAA
GTTGGCGAGGGACCATGCGAGGAGGGCGCATGAGGCGTCGGGAGGAGCCC
TGCCTTTACGTCAGATCGCCGACCCCCAAAATTCCTATCACATCTCCTTT
GTCGACAACTTGAAAGAAGTCTTCTTTCCACGCTGTGAAAGACCATGCAC
AGGTTCAGGGAGAAAAGCGGGAGGAACAGCAGCAGCAGGGGGGGGACCCA
AGCCAGAGTTGAACGATTTAACCTCCTCTCCTTCACGGCTAAAAAAGGAC
TAGGATTGCAGGATACTGGACTGAATGAAGAAAAACTCAGAAAGCATAAA
TAAAATGAGAAAAAAATAAAAATACCTTTTGAACTGAAATGGTTGATCTT
GTCGAAATTAATTGCGTATTGCGTATCGCATTTGAGGACTCTAGTAGGGT
TGGGGTGGGTGGGAGAGTGGGGCATTGAAGCGCAAGCAGATTTTTTTCCT
TTTGACGACGCTCGCAAGTCGAGTTTGGACTGCACTGCAGCACCCCCGCG
AACTGATGCGAACAAGCAGGTTACGAATTGGTTATCTTCCTGCTCTGAGA
TTGTCCTCTCGAGCTTGACTGTGGGTCCATAGAGGGTCAGGGGGATCCAT
GATTGTTTCCCTTGCTCCAGCGCGAGGTTTAGTACATCTCTCTTAACAAA
AGAACTTTGCGTTCCAAAATATTCACGGTTTTCACCTTTGTGTTTTTCCC
ACGCACCACTCCGCCACTTGCCCTGTCGCACGAAAGATGAAAAAAATCAG
GTCTACATATTTCACTACGTGACTTGGTGTGTCTTTTTTCTTTGTGTTGT
GCATTTGGCGTTCCCGAGTAATTTCTTCCCAGGTGGTCGTCGCCTCGCGG
GTCCTCACAAACAGGTCCCTCCCTCCCTCCTCATCGCCAAGTTTTCAGAT
CCCACATGGACGTTTGCACCACATGGAAGCCCTCTGCACCCCATGCATGC
ACACAATCAGACACATATAATGCCATTGTAAGCAAAGAGACGTGAAGAGA
GGGCATAGGCAGTCAGCCGTACCAACGCCAGGTACAGCCACAGAGCAGTC
CTCCCACGACGCCGTTGATGATGATGATGATGGGCCCCTTCGTCAGCAAA
ATGAAG back to topprotein sequence of NO02G01830.2 >NO02G01830.2-protein ID=NO02G01830.2-protein|Name=NO02G01830.2|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MEPIDLAFSTALVVACLSSFVVACSIPAGTITPSSWPTFDNYKADEIIYA
SGKECVTCKVPKLARSKHCRLCGVCQSRFDHHCGWLNQCVGELNYRHFLF
FLALHSMTFFWGSSCLWEVLRKEMAEKQLWEAKFYSPSSGATVGATPVVV
LQYLVVHEGAVCGVLALCFVMAVVLAGFLLYHLRLALRNITTNESFKWSA
VRAHAKLARDHARRAHEASGGALPLRQIADPQNSYHISFVDNLKEVFFPR
CERPCTGSGRKAGGTAAAGGGPKPELNDLTSSPSRLKKD* back to topmRNA from alignment at chr2:531980..534612- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G01830.2 ID=NO02G01830.2|Name=NO02G01830.2|organism=Nannochloropsis oceanica|type=mRNA|length=2633bp|location=Sequence derived from alignment at chr2:531980..534612- (Nannochloropsis oceanica)
AGCACCTTATAGCGGCGCTTGAGGTAGCTGGACCTCGAAAGAGGGAGGGC
GGGGCGCCCTGAAAAGCGGCGGAGAGCATCATTTTCACCTCGCACCATCG
CCTGGAGCCGGGAGGCTGAATCGTCCCAGGCCTGAGCCATGGAGATCATG
ACCATTTTAATTGTCTACATCGTCCTCGTTACATTCTTGGTCTGGGTTTG
CGTGGTAGCGGACCCCAACAGTGACTCATTAGGTACGTTTGTGTCTCTCT
AAGAGGGCACGCCGCCTCTGGGCTTGAATGAAGTGATGTCCCCCTTCCGG
GCTTGAATGAAGTGATGTAGGACACAGGGTACTAGAGTGAGAATCGTCAA
CTCTCTTGCTTCCTCTTCTCTTACTGCTAAGCAGCTTTATCTACTTATGT
ACTGCATAGTTATGCCTGTACGTCTAGCTCCAATTTTGATGTCGCCACTC
ATCCATTCACATTTAAGAGACCCACCCTCCTCCTCCCTCTTTCCCCACCT
ACGTCAATAACTCCATTCCAACACTAGGCGGCAAGCTCAACATCCTCCTT
ACCGAAGATCTTCCCGGATTACTCACCAAAAAGCTCCGCCGTTGCCTGCC
CTCCTCGCTCTTCGACTCACTCGCCCGCTCCTACGACTATGTGGTGAATC
AACGCAATCCCCTCCTCCAGCTCCTCTACCTCTTTCTTTACCTCGGCTCC
TTCGCCACCTTCATCTATGAAGGCTTGGGACGCATGGAGCCTATAGACTT
GGCCTTTTCTACCGCGTTGGTCGTTGCCTGTTTGTCTTCGTTTGTCGTAG
CGTGCTCGATCCCGGCGGGTACCATCACCCCGTCGAGCTGGCCAACCTTT
GACAATTACAAGGCGGACGAGATTATCTATGCTTCCGGAAAAGAGTGTGT
GACATGTAAGGTACCCAAATTGGCGAGGAGCAAGCATTGTCGTCTGTGTG
GGGTGTGTCAGTCGAGGTTTGATCACCACTGTGGGTGGTTAAACCAGTGC
GTGGGTGAGCTGAACTATAGACATTTTCTCTTCTTTTTGGCGTTGCACAG
CATGACTTTCTTTTGGGGAAGTTCGTGTTTATGGGAGGTGTTGAGGAAAG
AAATGGCAGAGAAACAATTGTGGGAGGCAAAATTCTATAGTCCGAGCTCT
GGGGCGACGGTGGGGGCGACCCCAGTGGTGGTGTTGCAATATCTTGTGGT
GCATGAAGGAGCAGTGTGTGGAGTGCTTGCATTGTGCTTTGTCATGGCTG
TGGTACTGGCGGGGTTTTTGTTGTATCACTTGCGTTTGGCCTTGAGAAAT
ATCACGACGAACGAGTCGTTTAAGTGGTCTGCGGTGAGGGCACATGCGAA
GTTGGCGAGGGACCATGCGAGGAGGGCGCATGAGGCGTCGGGTAAGGATT
CAAGAAGGGAAAGAGTGGACAAGGGGAGGGATGGACTGCACGAGAAAATT
GGCTCGATCTTATCGAACGGATTTTCTAGATGCAAGATTTGCAAGGTCTC
GAACCGCTTCATGGATGTCGTGTATGATGCTCACTTCTCTTTTGTCCCTC
CCTTCCCTTGAACGTCAGGAGGAGCCCTGCCTTTACGTCAGATCGCCGAC
CCCCAAAATTCCTATCACATCTCCTTTGTCGACAACTTGAAAGAAGTCTT
CTTTCCACGCTGTGAAAGACCATGCACAGGTTCAGGGAGAAAAGCGGGAG
GAACAGCAGCAGCAGGGGGGGGACCCAAGCCAGAGTTGAACGATTTAACC
TCCTCTCCTTCACGGCTAAAAAAGGACTAGGATTGCAGGATACTGGACTG
AATGAAGAAAAACTCAGAAAGCATAAATAAAATGAGAAAAAAATAAAAAT
ACCTTTTGAACTGAAATGGTTGATCTTGTCGAAATTAATTGCGTATTGCG
TATCGCATTTGAGGACTCTAGTAGGGTTGGGGTGGGTGGGAGAGTGGGGC
ATTGAAGCGCAAGCAGATTTTTTTCCTTTTGACGACGCTCGCAAGTCGAG
TTTGGACTGCACTGCAGCACCCCCGCGAACTGATGCGAACAAGCAGGTTA
CGAATTGGTTATCTTCCTGCTCTGAGATTGTCCTCTCGAGCTTGACTGTG
GGTCCATAGAGGGTCAGGGGGATCCATGATTGTTTCCCTTGCTCCAGCGC
GAGGTTTAGTACATCTCTCTTAACAAAAGAACTTTGCGTTCCAAAATATT
CACGGTTTTCACCTTTGTGTTTTTCCCACGCACCACTCCGCCACTTGCCC
TGTCGCACGAAAGATGAAAAAAATCAGGTCTACATATTTCACTACGTGAC
TTGGTGTGTCTTTTTTCTTTGTGTTGTGCATTTGGCGTTCCCGAGTAATT
TCTTCCCAGGTGGTCGTCGCCTCGCGGGTCCTCACAAACAGGTCCCTCCC
TCCCTCCTCATCGCCAAGTTTTCAGATCCCACATGGACGTTTGCACCACA
TGGAAGCCCTCTGCACCCCATGCATGCACACAATCAGACACATATAATGC
CATTGTAAGCAAAGAGACGTGAAGAGAGGGCATAGGCAGTCAGCCGTACC
AACGCCAGGTACAGCCACAGAGCAGTCCTCCCACGACGCCGTTGATGATG
ATGATGATGGGCCCCTTCGTCAGCAAAATGAAG back to topCoding sequence (CDS) from alignment at chr2:531980..534612- >NO02G01830.2 ID=NO02G01830.2|Name=NO02G01830.2|organism=Nannochloropsis oceanica|type=CDS|length=870bp|location=Sequence derived from alignment at chr2:531980..534612- (Nannochloropsis oceanica)
ATGGAGCCTATAGACTTGGCCTTTTCTACCGCGTTGGTCGTTGCCTGTTT
GTCTTCGTTTGTCGTAGCGTGCTCGATCCCGGCGGGTACCATCACCCCGT
CGAGCTGGCCAACCTTTGACAATTACAAGGCGGACGAGATTATCTATGCT
TCCGGAAAAGAGTGTGTGACATGTAAGGTACCCAAATTGGCGAGGAGCAA
GCATTGTCGTCTGTGTGGGGTGTGTCAGTCGAGGTTTGATCACCACTGTG
GGTGGTTAAACCAGTGCGTGGGTGAGCTGAACTATAGACATTTTCTCTTC
TTTTTGGCGTTGCACAGCATGACTTTCTTTTGGGGAAGTTCGTGTTTATG
GGAGGTGTTGAGGAAAGAAATGGCAGAGAAACAATTGTGGGAGGCAAAAT
TCTATAGTCCGAGCTCTGGGGCGACGGTGGGGGCGACCCCAGTGGTGGTG
TTGCAATATCTTGTGGTGCATGAAGGAGCAGTGTGTGGAGTGCTTGCATT
GTGCTTTGTCATGGCTGTGGTACTGGCGGGGTTTTTGTTGTATCACTTGC
GTTTGGCCTTGAGAAATATCACGACGAACGAGTCGTTTAAGTGGTCTGCG
GTGAGGGCACATGCGAAGTTGGCGAGGGACCATGCGAGGAGGGCGCATGA
GGCGTCGGGAGGAGCCCTGCCTTTACGTCAGATCGCCGACCCCCAAAATT
CCTATCACATCTCCTTTGTCGACAACTTGAAAGAAGTCTTCTTTCCACGC
TGTGAAAGACCATGCACAGGTTCAGGGAGAAAAGCGGGAGGAACAGCAGC
AGCAGGGGGGGGACCCAAGCCAGAGTTGAACGATTTAACCTCCTCTCCTT
CACGGCTAAAAAAGGACTAG back to top
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