NO02G01760.1, NO02G01760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01760.1
Unique NameNO02G01760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2136
Alignment locationchr2:516709..518844 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:516709..518844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01760.1 vs.
Match: EWM30507.1 (nucleotide-binding protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 594.0 bits (1530), Expect = 3.500e-166
Identity = 299/377 (79.31%), Postives = 329/377 (87.27%), Query Frame = 0 
Query:    4 SETSTSTAPPPADANEGCVGPTSEHAGKANACAGCPNQKVCASGEAKRVDPALAVVQDKLAQVKHKLVVLSGKGGVGKTTFACQLAFSLAQQHGLQVGLLDVDICGPSVPRVMGLNGQEVHQSAAGWSPVYVDDNLGVMSIGFMLPNQDDAVIWRGPRKNGLIKQFLTDVDWGELDYLIIDTPPGTSDEHLSIVQYLKQGCGVDGAVVVTTPQEVAMMDVRKELNFCKKTGLRVIGVVENMSGLTVPLKALRFWGGPLTASTDDVSG-QDTSR----NKPVVAAVAREDKTAAVLKALRQIDHSLLDCLVEADVFPAFGSGPQGMAAAFDVPFLGKLPLDPDLLRACEEGVSLAEKAPESSAVLALENIVRGVLDGT 376
            S  + S AP P DANEGCVGPTSE AGKA+ CAGCPNQKVCASGE ++ DPAL +VQDKLAQVKHKLVVLSGKGGVGKTTFACQLAF LAQQ+GLQVGLLDVDICGPSVPRVMGL GQEVHQSAAGWSPVYVDDNLGVMSIGFMLPN DDAVIWRGPRKNGLIKQFLTDVDWGELDYLIIDTPPGTSDEHLSI+QYLK GCG+DGAVVVTTPQEVAM DVRKELNFCKKTGL+V+GVVENMSGL VPL AL F   P+   + + +G ++T +    +KPV+     +DKTA VL+ALR++D SLLDC+V+A+VFPAFGSGPQGMAAAF+VPFLGKLPLDPDLLRACEEGVSL EKAP+S AV AL  IVR ++  T
Sbjct:    6 SSGARSQAPVPPDANEGCVGPTSEEAGKASTCAGCPNQKVCASGEPRQPDPALVIVQDKLAQVKHKLVVLSGKGGVGKTTFACQLAFCLAQQYGLQVGLLDVDICGPSVPRVMGLTGQEVHQSAAGWSPVYVDDNLGVMSIGFMLPNADDAVIWRGPRKNGLIKQFLTDVDWGELDYLIIDTPPGTSDEHLSIIQYLKDGCGIDGAVVVTTPQEVAMADVRKELNFCKKTGLQVVGVVENMSGLNVPLTALNFLEKPVARHSGNGAGIEETDKSMETDKPVI-----KDKTAEVLEALRKVDPSLLDCVVQAEVFPAFGSGPQGMAAAFEVPFLGKLPLDPDLLRACEEGVSLEEKAPQSPAVPALHTIVRSIVAAT 377
The following BLAST results are available for this feature:
BLAST of NO02G01760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30507.13.500e-16679.31nucleotide-binding protein 1 [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01760NO02G01760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01760.1NO02G01760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01760.1.cds1NO02G01760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01760.1 ID=NO02G01760.1|Name=NO02G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp
CATAGGGTTTTAATATCCTTGCAGGGAAAATATTGGCCTAAATACGCAAT
ATTTTTTATGAGTTAAATAAATTCCTCTGAATTTATGCACTTGATGTTAT
GACAGGATTTTGGGGGGCCGTTGGTGCGATCTGAGGTGTGGTCTGAGGAT
AAAGTATGTCTTACCCCCGCCGGCCTTGGTGCTTCGCAGCAGACGCAAAT
TGCTGCCCAAGCTGACGACCTAAAAATGAAATCTTTTTCGTCTTACATTA
AATCTTCTCTCGATATTTACGTGAGTTTTCTATATGCGACAGTAATCCGA
AGCTGATTAGGTGTGGCCGATCTCATGTGTTTAGGCCATGTACACACAAA
TTAGTGTAAGACACAAAAGCCGAGCGTACCAAGGCATTTAAGTGCTGCCT
TGGCATAATTCCTCTTTTTTAGTTGGCCAATATCAGCTTGTCAGGTTGTC
TTTGGAGGGTGGAGCCGGCACAAGTGGAGGATACCAGACGAGAGCGACGA
GAGCTCGGAGTCGTTGTTCTGTTATTTGCACACGCATTGTTACCATCCAA
TGAGATTCAAATTCTGAGTGGCAGCATACACCTTAAACACGGCAGATATA
CTCTCACATACTTTCTTTCAACGCGTGGGCCGGTTGTCCTGGTCCCGGCA
GCTTTCTTCGCGATGGAACGCTCCATCACGGGTTACGAGGGGGTAGCCAT
GATCCACACCCACATACACGCAAAAACTCACCACCATCCTCCTCATACCC
CTATCGACAGCCATGTCCTCCTCGGAAACCTCCACCTCCACAGCTCCACC
GCCTGCCGACGCCAACGAGGGCTGTGTCGGCCCCACATCTGAGCACGCGG
GAAAGGCCAACGCCTGCGCGGGGTGCCCGAATCAGAAAGTATGTGCGTCA
GGCGAGGCTAAGCGGGTCGACCCTGCACTGGCCGTCGTCCAAGACAAGCT
AGCTCAAGTAAAGCACAAGCTGGTGGTGCTCTCAGGGAAGGGTGGTGTCG
GAAAGACGACTTTTGCCTGTCAGCTAGCGTTTAGTCTGGCGCAGCAGCAT
GGCTTGCAAGTGGGGTTGTTGGACGTGGATATTTGTGGGCCGAGCGTGCC
GCGTGTCATGGGATTGAACGGACAAGAAGTGCACCAAAGTGCGGCGGGCT
GGTCCCCTGTCTACGTAGACGACAATCTAGGAGTCATGTCTATTGGTTTT
ATGCTCCCTAATCAGGATGATGCTGTCATATGGCGGGGGCCGCGGAAAAA
TGGGTTGATCAAACAGTTTTTGACCGATGTAGACTGGGGAGAGTTGGATT
ATCTTATCATTGACACTCCACCTGGGACGTCTGACGAACATCTTTCCATC
GTGCAGTATTTGAAGCAAGGGTGTGGGGTGGATGGTGCTGTGGTCGTGAC
GACGCCACAGGAAGTGGCCATGATGGACGTGCGTAAGGAGCTGAATTTTT
GCAAGAAGACGGGGTTGAGGGTGATAGGGGTTGTGGAAAATATGAGCGGG
CTCACTGTTCCTCTGAAAGCCTTGCGGTTTTGGGGCGGACCTCTGACAGC
TAGCACTGATGATGTGAGTGGCCAAGATACCAGTAGGAACAAGCCAGTGG
TGGCGGCCGTGGCACGGGAGGACAAGACAGCCGCAGTGCTGAAGGCACTT
AGGCAGATTGATCATTCCTTGCTCGACTGCCTGGTGGAAGCGGATGTTTT
CCCTGCATTTGGTAGTGGACCACAAGGGATGGCCGCGGCATTCGATGTTC
CTTTTTTGGGAAAATTGCCCTTGGATCCTGATTTGTTGCGGGCCTGTGAG
GAAGGTGTGTCGTTGGCCGAGAAGGCGCCTGAGTCCTCGGCGGTGCTGGC
GTTGGAAAATATCGTGCGGGGTGTTTTGGATGGGACTAGGCTAGAGGTAG
GGAAGGAGAGGGATGTAGTTGGTGATGGAAAGGGAGGGGAGGCGCAGCTG
TGAGGGGTGATGTGTAAAAAGAGGTGGACTGTATTGAGCGTAGTCGTATA
TGCGCAGGTACGTTGTGAAAGAAATGGTGCGGAAAGAAGACGATTTAGAT
CTAGATTTCGGATTGAAAACTATTCTTTGGCTTGCTATTATCTTGATTTA
TCGATGCAAAAAAAAGGAATGAACCTCCTCCCAGGC
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protein sequence of NO02G01760.1

>NO02G01760.1-protein ID=NO02G01760.1-protein|Name=NO02G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp
MSSSETSTSTAPPPADANEGCVGPTSEHAGKANACAGCPNQKVCASGEAK
RVDPALAVVQDKLAQVKHKLVVLSGKGGVGKTTFACQLAFSLAQQHGLQV
GLLDVDICGPSVPRVMGLNGQEVHQSAAGWSPVYVDDNLGVMSIGFMLPN
QDDAVIWRGPRKNGLIKQFLTDVDWGELDYLIIDTPPGTSDEHLSIVQYL
KQGCGVDGAVVVTTPQEVAMMDVRKELNFCKKTGLRVIGVVENMSGLTVP
LKALRFWGGPLTASTDDVSGQDTSRNKPVVAAVAREDKTAAVLKALRQID
HSLLDCLVEADVFPAFGSGPQGMAAAFDVPFLGKLPLDPDLLRACEEGVS
LAEKAPESSAVLALENIVRGVLDGTRLEVGKERDVVGDGKGGEAQL*
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mRNA from alignment at chr2:516709..518844+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01760.1 ID=NO02G01760.1|Name=NO02G01760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp|location=Sequence derived from alignment at chr2:516709..518844+ (Nannochloropsis oceanica)
CATAGGGTTTTAATATCCTTGCAGGGAAAATATTGGCCTAAATACGCAAT
ATTTTTTATGAGTTAAATAAATTCCTCTGAATTTATGCACTTGATGTTAT
GACAGGATTTTGGGGGGCCGTTGGTGCGATCTGAGGTGTGGTCTGAGGAT
AAAGTATGTCTTACCCCCGCCGGCCTTGGTGCTTCGCAGCAGACGCAAAT
TGCTGCCCAAGCTGACGACCTAAAAATGAAATCTTTTTCGTCTTACATTA
AATCTTCTCTCGATATTTACGTGAGTTTTCTATATGCGACAGTAATCCGA
AGCTGATTAGGTGTGGCCGATCTCATGTGTTTAGGCCATGTACACACAAA
TTAGTGTAAGACACAAAAGCCGAGCGTACCAAGGCATTTAAGTGCTGCCT
TGGCATAATTCCTCTTTTTTAGTTGGCCAATATCAGCTTGTCAGGTTGTC
TTTGGAGGGTGGAGCCGGCACAAGTGGAGGATACCAGACGAGAGCGACGA
GAGCTCGGAGTCGTTGTTCTGTTATTTGCACACGCATTGTTACCATCCAA
TGAGATTCAAATTCTGAGTGGCAGCATACACCTTAAACACGGCAGATATA
CTCTCACATACTTTCTTTCAACGCGTGGGCCGGTTGTCCTGGTCCCGGCA
GCTTTCTTCGCGATGGAACGCTCCATCACGGGTTACGAGGGGGTAGCCAT
GATCCACACCCACATACACGCAAAAACTCACCACCATCCTCCTCATACCC
CTATCGACAGCCATGTCCTCCTCGGAAACCTCCACCTCCACAGCTCCACC
GCCTGCCGACGCCAACGAGGGCTGTGTCGGCCCCACATCTGAGCACGCGG
GAAAGGCCAACGCCTGCGCGGGGTGCCCGAATCAGAAAGTATGTGCGTCA
GGCGAGGCTAAGCGGGTCGACCCTGCACTGGCCGTCGTCCAAGACAAGCT
AGCTCAAGTAAAGCACAAGCTGGTGGTGCTCTCAGGGAAGGGTGGTGTCG
GAAAGACGACTTTTGCCTGTCAGCTAGCGTTTAGTCTGGCGCAGCAGCAT
GGCTTGCAAGTGGGGTTGTTGGACGTGGATATTTGTGGGCCGAGCGTGCC
GCGTGTCATGGGATTGAACGGACAAGAAGTGCACCAAAGTGCGGCGGGCT
GGTCCCCTGTCTACGTAGACGACAATCTAGGAGTCATGTCTATTGGTTTT
ATGCTCCCTAATCAGGATGATGCTGTCATATGGCGGGGGCCGCGGAAAAA
TGGGTTGATCAAACAGTTTTTGACCGATGTAGACTGGGGAGAGTTGGATT
ATCTTATCATTGACACTCCACCTGGGACGTCTGACGAACATCTTTCCATC
GTGCAGTATTTGAAGCAAGGGTGTGGGGTGGATGGTGCTGTGGTCGTGAC
GACGCCACAGGAAGTGGCCATGATGGACGTGCGTAAGGAGCTGAATTTTT
GCAAGAAGACGGGGTTGAGGGTGATAGGGGTTGTGGAAAATATGAGCGGG
CTCACTGTTCCTCTGAAAGCCTTGCGGTTTTGGGGCGGACCTCTGACAGC
TAGCACTGATGATGTGAGTGGCCAAGATACCAGTAGGAACAAGCCAGTGG
TGGCGGCCGTGGCACGGGAGGACAAGACAGCCGCAGTGCTGAAGGCACTT
AGGCAGATTGATCATTCCTTGCTCGACTGCCTGGTGGAAGCGGATGTTTT
CCCTGCATTTGGTAGTGGACCACAAGGGATGGCCGCGGCATTCGATGTTC
CTTTTTTGGGAAAATTGCCCTTGGATCCTGATTTGTTGCGGGCCTGTGAG
GAAGGTGTGTCGTTGGCCGAGAAGGCGCCTGAGTCCTCGGCGGTGCTGGC
GTTGGAAAATATCGTGCGGGGTGTTTTGGATGGGACTAGGCTAGAGGTAG
GGAAGGAGAGGGATGTAGTTGGTGATGGAAAGGGAGGGGAGGCGCAGCTG
TGAGGGGTGATGTGTAAAAAGAGGTGGACTGTATTGAGCGTAGTCGTATA
TGCGCAGGTACGTTGTGAAAGAAATGGTGCGGAAAGAAGACGATTTAGAT
CTAGATTTCGGATTGAAAACTATTCTTTGGCTTGCTATTATCTTGATTTA
TCGATGCAAAAAAAAGGAATGAACCTCCTCCCAGGC
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Coding sequence (CDS) from alignment at chr2:516709..518844+

>NO02G01760.1 ID=NO02G01760.1|Name=NO02G01760.1|organism=Nannochloropsis oceanica|type=CDS|length=1191bp|location=Sequence derived from alignment at chr2:516709..518844+ (Nannochloropsis oceanica)
ATGTCCTCCTCGGAAACCTCCACCTCCACAGCTCCACCGCCTGCCGACGC
CAACGAGGGCTGTGTCGGCCCCACATCTGAGCACGCGGGAAAGGCCAACG
CCTGCGCGGGGTGCCCGAATCAGAAAGTATGTGCGTCAGGCGAGGCTAAG
CGGGTCGACCCTGCACTGGCCGTCGTCCAAGACAAGCTAGCTCAAGTAAA
GCACAAGCTGGTGGTGCTCTCAGGGAAGGGTGGTGTCGGAAAGACGACTT
TTGCCTGTCAGCTAGCGTTTAGTCTGGCGCAGCAGCATGGCTTGCAAGTG
GGGTTGTTGGACGTGGATATTTGTGGGCCGAGCGTGCCGCGTGTCATGGG
ATTGAACGGACAAGAAGTGCACCAAAGTGCGGCGGGCTGGTCCCCTGTCT
ACGTAGACGACAATCTAGGAGTCATGTCTATTGGTTTTATGCTCCCTAAT
CAGGATGATGCTGTCATATGGCGGGGGCCGCGGAAAAATGGGTTGATCAA
ACAGTTTTTGACCGATGTAGACTGGGGAGAGTTGGATTATCTTATCATTG
ACACTCCACCTGGGACGTCTGACGAACATCTTTCCATCGTGCAGTATTTG
AAGCAAGGGTGTGGGGTGGATGGTGCTGTGGTCGTGACGACGCCACAGGA
AGTGGCCATGATGGACGTGCGTAAGGAGCTGAATTTTTGCAAGAAGACGG
GGTTGAGGGTGATAGGGGTTGTGGAAAATATGAGCGGGCTCACTGTTCCT
CTGAAAGCCTTGCGGTTTTGGGGCGGACCTCTGACAGCTAGCACTGATGA
TGTGAGTGGCCAAGATACCAGTAGGAACAAGCCAGTGGTGGCGGCCGTGG
CACGGGAGGACAAGACAGCCGCAGTGCTGAAGGCACTTAGGCAGATTGAT
CATTCCTTGCTCGACTGCCTGGTGGAAGCGGATGTTTTCCCTGCATTTGG
TAGTGGACCACAAGGGATGGCCGCGGCATTCGATGTTCCTTTTTTGGGAA
AATTGCCCTTGGATCCTGATTTGTTGCGGGCCTGTGAGGAAGGTGTGTCG
TTGGCCGAGAAGGCGCCTGAGTCCTCGGCGGTGCTGGCGTTGGAAAATAT
CGTGCGGGGTGTTTTGGATGGGACTAGGCTAGAGGTAGGGAAGGAGAGGG
ATGTAGTTGGTGATGGAAAGGGAGGGGAGGCGCAGCTGTGA
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Synonyms
Publications