NO02G01720.1, NO02G01720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01720.1
Unique NameNO02G01720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1626
Alignment locationchr2:503936..505561 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:503936..505561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01720.1 vs.
Match: EWM30534.1 (armadillo repeat containing 6 [Nannochloropsis gaditana])

HSP 1 Score: 694.1 bits (1790), Expect = 3.400e-196
Identity = 351/534 (65.73%), Postives = 426/534 (79.78%), Query Frame = 0 
Query:   13 KKRISQVTFDETVRENMEEFELEREEAVTDAVRQFTSQGVDLGNICVALHECDGHWLKEVDAQLTFFITCLDNGVQVALPASWDRVGTVVALRALHAALTNADADKAANARKLMGSKGTVNVVARLWQEHQEEAAA-----DDDSAVVDARILALAVTQALCSGGSAGEASRDMFWPTSMRMLCNAAQQAYSQQDRAFYLPFLSLARVLCTRAEDNKVHYVRYGGLDLLVGALKDDPWASDRNIVCETCKALKAVTATDDFRKDFSASHTHTRALVGKGAIPLLLQSCHRFRTDLDTSAAALAALRNLANNDESVNQIASEGGLDLAVRALEAHWFHPPLAQTAIGLFRNISANDRHKTSLCNNGAAELMLKAMKKHGGKVKIQEHGLATMGAMALRSPENCKQLVGLGAVLVILQALRNHAEARSVQRQACLAIRNMVSREPEVGEAFLEGGAEPLLRLAGRYQESVDEAYAALRDLKCDVKRVTVDPVTGKVQDADQFGSTKSCFHPVFESSDNIEGAVEAAISAPSNSYRF 542
            KKRISQ TFDETV ENM + E++R +AV DA++QFTSQGVDL NICV L+E DG WL+EVDAQLT    CLDNG  ++LP SW    T+ AL+ALH+ALT++D  +A NARKL+GSK  VNV+AR+WQE  +E +       +  A+  AR+LA+AVT+A C GGSAG+ S+  F PTSMRMLC AA++A  ++ R+F +  LSL RVL TRAED+KV +V +GGLD LV  L+ + WASD  IV E C A+KAVTA DDFRKDFSASHTHTRAL  KG IP+LLQ+C RF  D DT A  L ALRNLANN+ESVNQIASEGG+   VRAL+AH  HP LA+ A GLFRN+SA+DRHKT LC NGAA+LML+AM++H  + KIQEHGLAT+GAMALRSP+NC+ L G+GAV VIL+AL  H EAR++QRQ CLA+RNMVSR PE+GEAFLE GAEPLLRLAGRYQESVDEAYAALRDLKCDVKRV VDP+TG+++  ++FGS K+ F P+F+SS++IEGAV+AAI+APSNSYRF
Sbjct:   33 KKRISQATFDETVYENMVDLEMDRADAVKDALQQFTSQGVDLENICVTLNENDGRWLEEVDAQLTALKNCLDNGTDLSLPPSWSPEATLAALQALHSALTDSDIKRADNARKLLGSKDAVNVIARIWQEWGDEPSCVTLDPAEAEAIAKARLLAVAVTEAACGGGSAGDQSKHAFRPTSMRMLCQAARRAQLREQRSFLIASLSLVRVLSTRAEDHKVSFVEHGGLDTLVECLEKEAWASDCEIVREACGAIKAVTAVDDFRKDFSASHTHTRALTAKGCIPVLLQACRRFGADSDTVATGLDALRNLANNEESVNQIASEGGVVGTVRALQAHLSHPALARAATGLFRNVSADDRHKTRLCKNGAAQLMLEAMREHAQERKIQEHGLATLGAMALRSPDNCRHLFGMGAVSVILEALERHPEARAIQRQGCLAVRNMVSRVPELGEAFLEAGAEPLLRLAGRYQESVDEAYAALRDLKCDVKRVIVDPLTGEIKAPEEFGSAKTSFRPLFDSSNDIEGAVQAAINAPSNSYRF 566
The following BLAST results are available for this feature:
BLAST of NO02G01720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30534.13.400e-19665.73armadillo repeat containing 6 [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01720NO02G01720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01720.1NO02G01720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01720.1.cds1NO02G01720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01720.1 ID=NO02G01720.1|Name=NO02G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp
ATGACCTCCACCACCGCGCCTGCCGCGGGGCCCGCAAAGAAGAGAATATC
GCAAGTCACGTTCGATGAGACGGTGCGGGAGAACATGGAGGAGTTTGAGT
TAGAGCGGGAAGAGGCCGTGACGGATGCTGTTCGGCAGTTCACGTCGCAA
GGCGTTGACTTGGGCAACATTTGCGTGGCCTTGCACGAATGCGACGGGCA
TTGGCTCAAGGAGGTCGATGCACAATTGACTTTCTTCATAACGTGCTTAG
ATAATGGGGTCCAGGTAGCGTTGCCGGCATCGTGGGACCGTGTGGGGACG
GTGGTGGCTTTGCGGGCTCTGCACGCGGCTTTGACGAATGCGGACGCTGA
CAAAGCAGCGAATGCGCGGAAGCTGATGGGCTCTAAAGGAACGGTGAATG
TGGTGGCACGGTTATGGCAAGAACATCAGGAAGAAGCTGCTGCTGACGAT
GATAGTGCTGTGGTCGATGCCCGCATCCTGGCACTGGCCGTGACGCAGGC
TCTGTGTAGTGGAGGCTCTGCGGGGGAGGCAAGCCGTGACATGTTCTGGC
CGACAAGCATGCGAATGCTGTGCAATGCTGCCCAACAAGCATATTCACAA
CAGGACCGAGCGTTCTATTTGCCTTTCCTTTCCTTGGCCCGTGTGTTGTG
CACCCGGGCGGAAGATAACAAGGTGCATTATGTGCGATATGGTGGACTAG
ACCTATTAGTAGGCGCATTGAAAGATGATCCCTGGGCCAGCGACCGCAAT
ATCGTCTGCGAGACCTGCAAAGCTCTAAAGGCTGTGACTGCAACTGATGA
CTTTAGGAAGGATTTCAGCGCCTCACACACCCATACCCGCGCTTTGGTCG
GCAAGGGTGCCATCCCCCTCCTCCTTCAATCATGTCACCGCTTTCGCACC
GATCTCGACACTTCGGCCGCCGCCCTGGCCGCCTTGCGAAATTTGGCCAA
CAACGACGAGAGCGTCAATCAGATTGCCTCGGAGGGAGGCTTAGATCTCG
CGGTACGTGCCTTGGAAGCGCATTGGTTTCATCCTCCTCTGGCCCAAACG
GCCATTGGGCTGTTTCGCAACATCTCTGCCAATGATCGACACAAGACAAG
CTTGTGCAATAACGGTGCTGCGGAATTGATGCTCAAGGCTATGAAAAAGC
ACGGGGGAAAAGTGAAGATTCAAGAACATGGGCTCGCGACGATGGGTGCA
ATGGCTCTGCGGAGCCCTGAAAACTGTAAGCAGCTGGTGGGGCTGGGTGC
GGTGTTGGTGATCTTGCAAGCACTACGCAACCATGCGGAGGCTCGTAGCG
TCCAGAGGCAGGCATGCTTGGCAATCAGGAACATGGTAAGCCGGGAACCG
GAGGTGGGGGAGGCATTTTTGGAGGGGGGAGCGGAACCCTTGTTGAGACT
TGCGGGGAGGTATCAGGAAAGCGTGGATGAGGCATATGCGGCGCTGCGTG
ACTTGAAATGTGATGTAAAGAGAGTGACCGTTGACCCTGTCACAGGGAAG
GTTCAGGATGCAGACCAATTTGGGAGTACCAAGAGTTGTTTCCACCCCGT
GTTTGAGAGTAGTGATAATATCGAGGGGGCAGTGGAAGCCGCTATCAGTG
CGCCGTCTAACTCGTATCGATTTTAA
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protein sequence of NO02G01720.1

>NO02G01720.1-protein ID=NO02G01720.1-protein|Name=NO02G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=542bp
MTSTTAPAAGPAKKRISQVTFDETVRENMEEFELEREEAVTDAVRQFTSQ
GVDLGNICVALHECDGHWLKEVDAQLTFFITCLDNGVQVALPASWDRVGT
VVALRALHAALTNADADKAANARKLMGSKGTVNVVARLWQEHQEEAAADD
DSAVVDARILALAVTQALCSGGSAGEASRDMFWPTSMRMLCNAAQQAYSQ
QDRAFYLPFLSLARVLCTRAEDNKVHYVRYGGLDLLVGALKDDPWASDRN
IVCETCKALKAVTATDDFRKDFSASHTHTRALVGKGAIPLLLQSCHRFRT
DLDTSAAALAALRNLANNDESVNQIASEGGLDLAVRALEAHWFHPPLAQT
AIGLFRNISANDRHKTSLCNNGAAELMLKAMKKHGGKVKIQEHGLATMGA
MALRSPENCKQLVGLGAVLVILQALRNHAEARSVQRQACLAIRNMVSREP
EVGEAFLEGGAEPLLRLAGRYQESVDEAYAALRDLKCDVKRVTVDPVTGK
VQDADQFGSTKSCFHPVFESSDNIEGAVEAAISAPSNSYRF*
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mRNA from alignment at chr2:503936..505561-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01720.1 ID=NO02G01720.1|Name=NO02G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp|location=Sequence derived from alignment at chr2:503936..505561- (Nannochloropsis oceanica)
ATGACCTCCACCACCGCGCCTGCCGCGGGGCCCGCAAAGAAGAGAATATC
GCAAGTCACGTTCGATGAGACGGTGCGGGAGAACATGGAGGAGTTTGAGT
TAGAGCGGGAAGAGGCCGTGACGGATGCTGTTCGGCAGTTCACGTCGCAA
GGCGTTGACTTGGGCAACATTTGCGTGGCCTTGCACGAATGCGACGGGCA
TTGGCTCAAGGAGGTCGATGCACAATTGACTTTCTTCATAACGTGCTTAG
ATAATGGGGTCCAGGTAGCGTTGCCGGCATCGTGGGACCGTGTGGGGACG
GTGGTGGCTTTGCGGGCTCTGCACGCGGCTTTGACGAATGCGGACGCTGA
CAAAGCAGCGAATGCGCGGAAGCTGATGGGCTCTAAAGGAACGGTGAATG
TGGTGGCACGGTTATGGCAAGAACATCAGGAAGAAGCTGCTGCTGACGAT
GATAGTGCTGTGGTCGATGCCCGCATCCTGGCACTGGCCGTGACGCAGGC
TCTGTGTAGTGGAGGCTCTGCGGGGGAGGCAAGCCGTGACATGTTCTGGC
CGACAAGCATGCGAATGCTGTGCAATGCTGCCCAACAAGCATATTCACAA
CAGGACCGAGCGTTCTATTTGCCTTTCCTTTCCTTGGCCCGTGTGTTGTG
CACCCGGGCGGAAGATAACAAGGTGCATTATGTGCGATATGGTGGACTAG
ACCTATTAGTAGGCGCATTGAAAGATGATCCCTGGGCCAGCGACCGCAAT
ATCGTCTGCGAGACCTGCAAAGCTCTAAAGGCTGTGACTGCAACTGATGA
CTTTAGGAAGGATTTCAGCGCCTCACACACCCATACCCGCGCTTTGGTCG
GCAAGGGTGCCATCCCCCTCCTCCTTCAATCATGTCACCGCTTTCGCACC
GATCTCGACACTTCGGCCGCCGCCCTGGCCGCCTTGCGAAATTTGGCCAA
CAACGACGAGAGCGTCAATCAGATTGCCTCGGAGGGAGGCTTAGATCTCG
CGGTACGTGCCTTGGAAGCGCATTGGTTTCATCCTCCTCTGGCCCAAACG
GCCATTGGGCTGTTTCGCAACATCTCTGCCAATGATCGACACAAGACAAG
CTTGTGCAATAACGGTGCTGCGGAATTGATGCTCAAGGCTATGAAAAAGC
ACGGGGGAAAAGTGAAGATTCAAGAACATGGGCTCGCGACGATGGGTGCA
ATGGCTCTGCGGAGCCCTGAAAACTGTAAGCAGCTGGTGGGGCTGGGTGC
GGTGTTGGTGATCTTGCAAGCACTACGCAACCATGCGGAGGCTCGTAGCG
TCCAGAGGCAGGCATGCTTGGCAATCAGGAACATGGTAAGCCGGGAACCG
GAGGTGGGGGAGGCATTTTTGGAGGGGGGAGCGGAACCCTTGTTGAGACT
TGCGGGGAGGTATCAGGAAAGCGTGGATGAGGCATATGCGGCGCTGCGTG
ACTTGAAATGTGATGTAAAGAGAGTGACCGTTGACCCTGTCACAGGGAAG
GTTCAGGATGCAGACCAATTTGGGAGTACCAAGAGTTGTTTCCACCCCGT
GTTTGAGAGTAGTGATAATATCGAGGGGGCAGTGGAAGCCGCTATCAGTG
CGCCGTCTAACTCGTATCGATTTTAA
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Coding sequence (CDS) from alignment at chr2:503936..505561-

>NO02G01720.1 ID=NO02G01720.1|Name=NO02G01720.1|organism=Nannochloropsis oceanica|type=CDS|length=1626bp|location=Sequence derived from alignment at chr2:503936..505561- (Nannochloropsis oceanica)
ATGACCTCCACCACCGCGCCTGCCGCGGGGCCCGCAAAGAAGAGAATATC
GCAAGTCACGTTCGATGAGACGGTGCGGGAGAACATGGAGGAGTTTGAGT
TAGAGCGGGAAGAGGCCGTGACGGATGCTGTTCGGCAGTTCACGTCGCAA
GGCGTTGACTTGGGCAACATTTGCGTGGCCTTGCACGAATGCGACGGGCA
TTGGCTCAAGGAGGTCGATGCACAATTGACTTTCTTCATAACGTGCTTAG
ATAATGGGGTCCAGGTAGCGTTGCCGGCATCGTGGGACCGTGTGGGGACG
GTGGTGGCTTTGCGGGCTCTGCACGCGGCTTTGACGAATGCGGACGCTGA
CAAAGCAGCGAATGCGCGGAAGCTGATGGGCTCTAAAGGAACGGTGAATG
TGGTGGCACGGTTATGGCAAGAACATCAGGAAGAAGCTGCTGCTGACGAT
GATAGTGCTGTGGTCGATGCCCGCATCCTGGCACTGGCCGTGACGCAGGC
TCTGTGTAGTGGAGGCTCTGCGGGGGAGGCAAGCCGTGACATGTTCTGGC
CGACAAGCATGCGAATGCTGTGCAATGCTGCCCAACAAGCATATTCACAA
CAGGACCGAGCGTTCTATTTGCCTTTCCTTTCCTTGGCCCGTGTGTTGTG
CACCCGGGCGGAAGATAACAAGGTGCATTATGTGCGATATGGTGGACTAG
ACCTATTAGTAGGCGCATTGAAAGATGATCCCTGGGCCAGCGACCGCAAT
ATCGTCTGCGAGACCTGCAAAGCTCTAAAGGCTGTGACTGCAACTGATGA
CTTTAGGAAGGATTTCAGCGCCTCACACACCCATACCCGCGCTTTGGTCG
GCAAGGGTGCCATCCCCCTCCTCCTTCAATCATGTCACCGCTTTCGCACC
GATCTCGACACTTCGGCCGCCGCCCTGGCCGCCTTGCGAAATTTGGCCAA
CAACGACGAGAGCGTCAATCAGATTGCCTCGGAGGGAGGCTTAGATCTCG
CGGTACGTGCCTTGGAAGCGCATTGGTTTCATCCTCCTCTGGCCCAAACG
GCCATTGGGCTGTTTCGCAACATCTCTGCCAATGATCGACACAAGACAAG
CTTGTGCAATAACGGTGCTGCGGAATTGATGCTCAAGGCTATGAAAAAGC
ACGGGGGAAAAGTGAAGATTCAAGAACATGGGCTCGCGACGATGGGTGCA
ATGGCTCTGCGGAGCCCTGAAAACTGTAAGCAGCTGGTGGGGCTGGGTGC
GGTGTTGGTGATCTTGCAAGCACTACGCAACCATGCGGAGGCTCGTAGCG
TCCAGAGGCAGGCATGCTTGGCAATCAGGAACATGGTAAGCCGGGAACCG
GAGGTGGGGGAGGCATTTTTGGAGGGGGGAGCGGAACCCTTGTTGAGACT
TGCGGGGAGGTATCAGGAAAGCGTGGATGAGGCATATGCGGCGCTGCGTG
ACTTGAAATGTGATGTAAAGAGAGTGACCGTTGACCCTGTCACAGGGAAG
GTTCAGGATGCAGACCAATTTGGGAGTACCAAGAGTTGTTTCCACCCCGT
GTTTGAGAGTAGTGATAATATCGAGGGGGCAGTGGAAGCCGCTATCAGTG
CGCCGTCTAACTCGTATCGATTTTAA
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Synonyms
Publications