NO02G01700.1, NO02G01700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01700.1
Unique NameNO02G01700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1024
Alignment locationchr2:499934..501267 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:499934..501267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G01700.1 vs.
Match: EWM30532.1 (NAD(P)-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 505.4 bits (1300), Expect = 1.300e-139
Identity = 257/321 (80.06%), Postives = 278/321 (86.60%), Query Frame = 0
Query:    1 MRVLAALAGFVLFAVAVVPPFTQGYMFGASAGTCQ-TTMSLDEPTRKVLITGAAGRTGALVFKKLQAKTDFQPVGLVRSQKSAAKLRKAAGATDEQIVIGDVMDSIALGKVLEGCDSLILCTSATPKILFGSILKILIKKLLRRTPGRPAFKFPPGGEPEEVDWIGAKNQIDAAVAAGVKHFVFLGSMGGTQPDNFLNSIGKREDGTGGDILLWKRKAEKYLIEKAKAQGMAYTIVHPGGLLDKPGGQQALVVDVDDVLLQRTTRSIPREDVAEVCVQALLQPKAKNVALDVIAEAVGVGVPTTDFDSLFGSLKGRSCAYE 321
            MR LA   G  L  V+V+P  TQGYM   S+GTCQ  TMSL +  RKVL+TGA GRTG LVF+KLQAKTDFQP+GLVRS+KSA+KLRKAAGATDEQIVIGDVMD   L K LEGCDSLILCTSATPKIL  S++KIL KKLLRR PGRP FKFPP GEPEEVDW+GAKNQ+DAA+AAGVKHFVFLGSMGGTQPDNFLNSIGKR DG+GGDILLWKRKAEKYLI++A + GM+YTIVHPGGLLDKPGGQQ LV DVDDVLLQRTTRSIPREDVAEVCVQALLQ KAKNVALDVIAEAVG G PTTDF +LF SL+ RSCA E
Sbjct:    8 MRALAFFGGLAL--VSVLPTITQGYMLATSSGTCQGPTMSLGDSPRKVLVTGAGGRTGTLVFQKLQAKTDFQPIGLVRSKKSASKLRKAAGATDEQIVIGDVMDPATLSKALEGCDSLILCTSATPKILLFSVIKILFKKLLRRAPGRPEFKFPPRGEPEEVDWLGAKNQVDAALAAGVKHFVFLGSMGGTQPDNFLNSIGKRPDGSGGDILLWKRKAEKYLIQRANSHGMSYTIVHPGGLLDKPGGQQELVFDVDDVLLQRTTRSIPREDVAEVCVQALLQSKAKNVALDVIAEAVGTGTPTTDFSALFDSLQNRSCAGE 326          
The following BLAST results are available for this feature:
BLAST of NO02G01700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30532.11.300e-13980.06NAD(P)-binding domain protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01700NO02G01700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01700.1NO02G01700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01700.1.cds1NO02G01700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01700.1.cds2NO02G01700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01700.1 ID=NO02G01700.1|Name=NO02G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1024bp
ACAGTGCACTCGTTCCACGCACAGGTAGACAAGGAGCGAATGCGGGTGCT
GGCTGCCCTGGCGGGCTTCGTGCTTTTTGCAGTGGCAGTGGTACCACCCT
TCACACAAGGGTACATGTTTGGCGCCTCCGCCGGCACCTGCCAAACGACT
ATGTCCTTGGATGAGCCCACGCGCAAGGTCTTGATCACGGGAGCTGCCGG
TCGCACAGGTGCTTTGGTTTTTAAGAAACTGCAGGCTAAGACTGACTTTC
AACCTGTCGGCCTTGTCCGTTCCCAAAAATCAGCGGCCAAGCTCCGCAAA
GCTGCGGGGGCCACTGATGAACAAATCGTGATTGGCGATGTCATGGACTC
CATTGCCCTAGGCAAGGTATTGGAGGGCTGCGACTCTCTTATTTTGTGCA
CAAGCGCCACGCCCAAAATTTTGTTTGGTAGTATTTTGAAAATTTTGATT
AAAAAACTCTTGCGAAGGACTCCCGGCCGACCTGCGTTTAAATTCCCCCC
TGGCGGAGAGCCGGAGGAGGTCGATTGGATTGGCGCCAAGAATCAGATCG
ATGCCGCGGTGGCTGCTGGTGTGAAGCATTTTGTGTTCTTAGGGTCCATG
GGGGGAACGCAGCCGGACAACTTTTTGAACTCAATTGGGAAGAGGGAAGA
CGGAACGGGGGGGGATATTCTGTTGTGGAAACGCAAGGCCGAGAAGTATT
TGATTGAGAAGGCGAAAGCACAGGGGATGGCGTATACAATCGTGCACCCG
GGAGGACTGTTAGACAAGCCGGGGGGACAACAGGCATTGGTCGTGGATGT
TGATGATGTGTTACTGCAGAGGACGACACGGTCAATCCCAAGGGAGGACG
TGGCCGAGGTGTGCGTGCAGGCGTTGTTGCAGCCGAAGGCGAAGAATGTG
GCGTTGGATGTGATTGCTGAAGCAGTCGGAGTCGGTGTCCCCACGACAGA
TTTTGATAGTCTTTTTGGGAGTTTAAAGGGGAGGAGTTGTGCATACGAGT
CGCCTTAGAAAAGGGGAGGGAGGG
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protein sequence of NO02G01700.1

>NO02G01700.1-protein ID=NO02G01700.1-protein|Name=NO02G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MRVLAALAGFVLFAVAVVPPFTQGYMFGASAGTCQTTMSLDEPTRKVLIT
GAAGRTGALVFKKLQAKTDFQPVGLVRSQKSAAKLRKAAGATDEQIVIGD
VMDSIALGKVLEGCDSLILCTSATPKILFGSILKILIKKLLRRTPGRPAF
KFPPGGEPEEVDWIGAKNQIDAAVAAGVKHFVFLGSMGGTQPDNFLNSIG
KREDGTGGDILLWKRKAEKYLIEKAKAQGMAYTIVHPGGLLDKPGGQQAL
VVDVDDVLLQRTTRSIPREDVAEVCVQALLQPKAKNVALDVIAEAVGVGV
PTTDFDSLFGSLKGRSCAYESP*
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mRNA from alignment at chr2:499934..501267+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01700.1 ID=NO02G01700.1|Name=NO02G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1334bp|location=Sequence derived from alignment at chr2:499934..501267+ (Nannochloropsis oceanica)
ACAGTGCACTCGTTCCACGCACAGGTAGACAAGGAGCGAATGCGGGTGCT GGCTGCCCTGGCGGGCTTCGTGCTTTTTGCAGGTACGTGATCGGACCCAG TCCAACCTGGAGCTCAGGCGAGACCCTCTCCAAGACCCCTTTCGCTTTAG CTTGTCTTTTTGTATCAGGAACAAATTTGTCGTGCATGTGTACGGAGTTG TTGGCATGCTCCGTGCTAGTCTCGTGGTCCTTTGTCCCTTGAAACGACAA TCAAGGCTTCTTCGGACCCCTGGCCCCAAGGTTTTTGTTGATGTTTGCGC CGTGTGCTTTCCCCTTTTCTATATGAATCCCGCAGGTAGTTCCATGCCTT ATCCCTTGTCTCCCATTCCCTCCCTATATAAATATCCCTCAGTGGCAGTG GTACCACCCTTCACACAAGGGTACATGTTTGGCGCCTCCGCCGGCACCTG CCAAACGACTATGTCCTTGGATGAGCCCACGCGCAAGGTCTTGATCACGG GAGCTGCCGGTCGCACAGGTGCTTTGGTTTTTAAGAAACTGCAGGCTAAG ACTGACTTTCAACCTGTCGGCCTTGTCCGTTCCCAAAAATCAGCGGCCAA GCTCCGCAAAGCTGCGGGGGCCACTGATGAACAAATCGTGATTGGCGATG TCATGGACTCCATTGCCCTAGGCAAGGTATTGGAGGGCTGCGACTCTCTT ATTTTGTGCACAAGCGCCACGCCCAAAATTTTGTTTGGTAGTATTTTGAA AATTTTGATTAAAAAACTCTTGCGAAGGACTCCCGGCCGACCTGCGTTTA AATTCCCCCCTGGCGGAGAGCCGGAGGAGGTCGATTGGATTGGCGCCAAG AATCAGATCGATGCCGCGGTGGCTGCTGGTGTGAAGCATTTTGTGTTCTT AGGGTCCATGGGGGGAACGCAGCCGGACAACTTTTTGAACTCAATTGGGA AGAGGGAAGACGGAACGGGGGGGGATATTCTGTTGTGGAAACGCAAGGCC GAGAAGTATTTGATTGAGAAGGCGAAAGCACAGGGGATGGCGTATACAAT CGTGCACCCGGGAGGACTGTTAGACAAGCCGGGGGGACAACAGGCATTGG TCGTGGATGTTGATGATGTGTTACTGCAGAGGACGACACGGTCAATCCCA AGGGAGGACGTGGCCGAGGTGTGCGTGCAGGCGTTGTTGCAGCCGAAGGC GAAGAATGTGGCGTTGGATGTGATTGCTGAAGCAGTCGGAGTCGGTGTCC CCACGACAGATTTTGATAGTCTTTTTGGGAGTTTAAAGGGGAGGAGTTGT GCATACGAGTCGCCTTAGAAAAGGGGAGGGAGGG
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Coding sequence (CDS) from alignment at chr2:499934..501267+

>NO02G01700.1 ID=NO02G01700.1|Name=NO02G01700.1|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at chr2:499934..501267+ (Nannochloropsis oceanica)
ATGCGGGTGCTGGCTGCCCTGGCGGGCTTCGTGCTTTTTGCAGTGGCAGT
GGTACCACCCTTCACACAAGGGTACATGTTTGGCGCCTCCGCCGGCACCT
GCCAAACGACTATGTCCTTGGATGAGCCCACGCGCAAGGTCTTGATCACG
GGAGCTGCCGGTCGCACAGGTGCTTTGGTTTTTAAGAAACTGCAGGCTAA
GACTGACTTTCAACCTGTCGGCCTTGTCCGTTCCCAAAAATCAGCGGCCA
AGCTCCGCAAAGCTGCGGGGGCCACTGATGAACAAATCGTGATTGGCGAT
GTCATGGACTCCATTGCCCTAGGCAAGGTATTGGAGGGCTGCGACTCTCT
TATTTTGTGCACAAGCGCCACGCCCAAAATTTTGTTTGGTAGTATTTTGA
AAATTTTGATTAAAAAACTCTTGCGAAGGACTCCCGGCCGACCTGCGTTT
AAATTCCCCCCTGGCGGAGAGCCGGAGGAGGTCGATTGGATTGGCGCCAA
GAATCAGATCGATGCCGCGGTGGCTGCTGGTGTGAAGCATTTTGTGTTCT
TAGGGTCCATGGGGGGAACGCAGCCGGACAACTTTTTGAACTCAATTGGG
AAGAGGGAAGACGGAACGGGGGGGGATATTCTGTTGTGGAAACGCAAGGC
CGAGAAGTATTTGATTGAGAAGGCGAAAGCACAGGGGATGGCGTATACAA
TCGTGCACCCGGGAGGACTGTTAGACAAGCCGGGGGGACAACAGGCATTG
GTCGTGGATGTTGATGATGTGTTACTGCAGAGGACGACACGGTCAATCCC
AAGGGAGGACGTGGCCGAGGTGTGCGTGCAGGCGTTGTTGCAGCCGAAGG
CGAAGAATGTGGCGTTGGATGTGATTGCTGAAGCAGTCGGAGTCGGTGTC
CCCACGACAGATTTTGATAGTCTTTTTGGGAGTTTAAAGGGGAGGAGTTG
TGCATACGAGTCGCCTTAG
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Synonyms
Publications