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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:494385..496977 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G01680.1 vs.
Match: EWM30500.1 (poly -specific ribonuclease parn [Nannochloropsis gaditana]) HSP 1 Score: 560.1 bits (1442), Expect = 8.600e-156 Identity = 318/577 (55.11%), Postives = 409/577 (70.88%), Query Frame = 0
Query: 1 MDVTKENFAETLPELEVALQDCEFATIDFEMSGISLPGNSGSSRPNYGDTPQERYAKTYPISSRYNIVQMGVCIFSKVPDEKTKSKKGEEAKKETLIARPFNFYTFAAEGEDVVLSLSAMHFLKDQGMDFNKWVRQGVSYTNEAGEAYLVKKMEQEREQDRQDAEAAAAAAAGGGEASEKSRIKLTRAADIDFVKAQMEMVTAWVKTEKVEGSGKG-TEEEVREAARRFKELSLTRTNAFLRRVLFEAIGAAYPEIVTEARNNQVILMRLSEAEKKERDAAREAARQAKLTSKVGMRLVFKAIGACGKPLVVHNGMHDLLFMMSAFNKPLPETLIDLKGQLSECFPNTIIYDTKYISTREELLGKTLGTDTGVEGLYHTLVVEEDKKEKGAGIGPKLVLAEGFEKYAGGGEGGGGGGYAHEAGYDAYLTGAIFARMRELLKEGGKEREVAMKVFNYRSLFETNLG-GNDELVYRKEGQLVFHLGWRKEDGTRLNDDSLMKVFGERAASVSILWVDDLSAFAVVNGEEG---LKEEDVMGGLTGPAAAVVRVTPYKKWLEGKEAKERVGSGRRDGGED 573
MDVTK FA+ LPE+E ALQ+CEF +DFEMSGI+L +G R Y DT QERYA+ ++SR+ I+QMG+ I SKV EKT S G A TL+A P+NFYTFAA+G+DV+LSLSA+HFLKD GMDFNKW+++GVSYTN A E L+K+++ ERE+D ++ + A G K+++ LT+ AD++F+K QME+V AW + ++ G + +EEE EAARR KEL+L RTNAF+RR LFEAI YP+++TE+RNNQVI++RLS AEK+ER AAREAARQ++ S VGMRLVFKA+ AC +P+VVHNG DLLFMM+AF+KPLPE L+D K + CFP +YDT+ ISTRE+LLGK+LG D G+EGL LV E + G LVLAEGFEKY GG E +AHEAGYDAYLTGA+FARM+ LL + G E+ + M VF++RS+F TNLG D VY ++G+LVFHLGW KE G L D LMK+FG+R+A ILW+DD AFAV+ G+EG L+ EDV+ L + VVRVT +K W KEA+ + G+D
Sbjct: 20 MDVTKATFADVLPEIEAALQNCEFVAVDFEMSGINL---AGQPRITYADTMQERYAQQRVVASRFKIIQMGISIVSKV--EKTGSS-GNSAS-HTLVACPYNFYTFAADGDDVILSLSAIHFLKDHGMDFNKWIQEGVSYTNAAREEELIKRLDCERERDEEEIKKPEGGAPG------KTQMNLTKPADVEFMKKQMEVVKAWREESEILGGAESLSEEEKSEAARRRKELTLARTNAFMRRALFEAIEIYYPDLITESRNNQVIVLRLSAAEKEERMAAREAARQSRRLSTVGMRLVFKAMSACARPIVVHNGFFDLLFMMAAFHKPLPEKLVDFKADVRACFP-AGVYDTRLISTREDLLGKSLG-DKGLEGLCQALVQETPEG------GVDLVLAEGFEKY-GGSE---RQAFAHEAGYDAYLTGAVFARMQVLLGDAGLEK-LKMMVFSFRSMFVTNLGEDRDWPVYGQQGELVFHLGWEKEAGKDLKDADLMKLFGDRSADTWILWIDDCGAFAVLQGKEGGEALRGEDVLKALP-ETSTVVRVTTFKDWCAAKEAETEAAGEPVEVGKD 569
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G01680.1 ID=NO02G01680.1|Name=NO02G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2593bp
ATGGACGTGACGAAGGAGAATTTTGCCGAGACCCTGCCCGAGCTCGAGGT
GGCACTGCAGGACTGCGAGTTCGCGACCATCGACTTCGAGATGTCGGGAA
TCAGTTTGCCTGGGAATAGCGGTTCTTCCCGCCCTAATTATGGCGACACA
CCACAGGAGAGGTATGCCAAAACGTACCCTATCAGCTCTCGTTACAATAT
CGTGCAGATGGGCGTCTGTATTTTTAGCAAAGTGCCAGACGAGAAGACAA
AGAGCAAGAAGGGGGAAGAGGCCAAAAAGGAAACTTTAATCGCACGGCCA
TTCAATTTTTACACTTTTGCCGCAGAGGGGGAGGACGTGGTCCTGAGCCT
GTCTGCGATGCATTTTTTGAAGGACCAAGGGATGGACTTCAATAAATGGG
TTCGACAGGGCGTATCGTACACAAATGAGGCAGGCGAGGCGTATTTGGTG
AAGAAAATGGAGCAGGAACGGGAGCAGGACCGACAGGACGCCGAGGCAGC
TGCAGCAGCAGCAGCGGGAGGAGGAGAAGCGTCGGAAAAGAGCAGGATAA
AGCTGACAAGGGCAGCAGATATCGACTTCGTCAAGGCCCAGATGGAGATG
GTTACAGCGTGGGTTAAGACTGAAAAGGTCGAGGGGAGTGGGAAAGGGAC
AGAGGAGGAAGTGAGGGAGGCTGCCCGCAGATTCAAGGAGTTGAGCTTGA
CGCGGACGAATGCGTTTTTGCGTCGGGTGTTGTTTGAAGCAATTGGCGCG
GCGTATCCGGAGATAGTGACGGAGGCCAGGAATAACCAGGTGATATTAAT
GAGGCTGTCGGAGGCGGAGAAGAAGGAGAGAGACGCTGCCAGGGAGGCGG
CGAGGCAGGCCAAGTTGACCAGTAAGGTGGGCATGCGCCTGGTGTTCAAG
GCGATTGGCGCGTGTGGTAAACCGTTGGTGGTCCACAATGGGATGCACGA
CTTGCTCTTCATGATGTCTGCATTCAACAAGCCACTTCCCGAGACCTTGA
TAGACTTGAAAGGGCAGCTGTCGGAATGCTTCCCGAATACGATAATTTAC
GATACGAAGTACATCTCGACGAGGGAAGAGTTGTTGGGCAAAACCTTGGG
GACGGATACGGGCGTGGAGGGGCTGTATCATACCTTGGTGGTAGAGGAGG
ACAAGAAGGAGAAAGGGGCTGGGATCGGTCCGAAGTTGGTCTTGGCGGAG
GGGTTTGAGAAATATGCGGGAGGAGGGGAGGGGGGGGGGGGGGGAGGGTA
TGCACATGAAGCGGGGTATGATGCTTATTTGACGGGGGCAATTTTTGCGA
GAATGCGAGAGTTGTTGAAGGAGGGAGGGAAGGAGCGGGAGGTGGCCATG
AAGGTGTTCAATTACCGGAGTTTGTTCGAGACGAATCTCGGGGGAAATGA
TGAGTTGGTGTACCGGAAGGAGGGGCAGTTGGTGTTTCATTTGGGGTGGA
GGAAGGAGGATGGCACAAGATTGAATGACGATTCCTTGATGAAAGTATTT
GGAGAGCGGGCGGCGAGTGTCTCAATCTTGTGGGTTGATGACTTGTCGGC
GTTTGCTGTCGTAAATGGAGAGGAGGGCTTGAAGGAGGAAGACGTGATGG
GCGGGCTTACGGGGCCGGCAGCGGCCGTCGTGCGGGTGACGCCTTATAAG
AAATGGTTGGAAGGGAAAGAGGCGAAAGAAAGGGTCGGGAGTGGACGAAG
GGATGGAGGGGAAGATGATGATGTGGCGGGAGCGTTGGCTTGGATCATGA
AGAGGACGTTGCGGCTGCTGGGGTTGAAGCCGGGGGAGAGGGAGGGACAA
GTTGGGAAGCGCTTGCGTAGTGCCTAGGGGACGACAGGGATAATAAGATT
GCTTTAAATTGAGAATTTAGACGGAATCAAGGACTAACATAATCTGCCAA
ATTAGGCCATGTATTAGATAAAATGCGTCATGTCGAGATCTGAGGTAGAG
AGACAAGAGGCGGCTGAGTAAAAGATTAGGTAGAGAAGATGTAGCTATAG
CAATAGCTCTCAGCAGGTCTTCCAGAAGGCAATGAACAGAGGAAAGAAGG
ATGGCTTTTTATCCTTCTCCTACTATCTCTAATCAGCAATAGGGAAAGAG
GGAGGGAGGGAATGCGAGAGGGGGGAGGAAGGGAGGATCGCTGATCGCCG
ACACTACCTCATGTTTTCTCGGCGACCGACACAGATCAAGAAATCGAAAG
AAAAGTGGTCGACAAAATTACAAGTGACTGTCAGGGAGGGGGGTTGGTTC
CCTTTTTGGTGCAGGACAAGAACATCCAATTGGAGAATCATTTCAGGTAG
AAACGAACCATACTACTCCGGGCTCTCCTATACATGCGGTGCGTAGCCCC
ATATAACGACAGACAGCTGCATTGGTGTTCACTATGTCTGCGGTTGTCGA
GATAACAGAAAACTATTTCTTCGGGCAAACCGTGCCTTCTCATACGAGCT
CGTAAGAAAGGTGCTCGAGACTGACGGGCCTGAGGCGTGCTTTGGACAAG
TCGATCACTGCACTCTTTGAGAAGGCAAAGGAACTTACTGAGAACAGATT
ATGTATGTATTGAACAACGACACAACCAATATCGCCGTGGTAA back to topprotein sequence of NO02G01680.1 >NO02G01680.1-protein ID=NO02G01680.1-protein|Name=NO02G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=609bp
MDVTKENFAETLPELEVALQDCEFATIDFEMSGISLPGNSGSSRPNYGDT
PQERYAKTYPISSRYNIVQMGVCIFSKVPDEKTKSKKGEEAKKETLIARP
FNFYTFAAEGEDVVLSLSAMHFLKDQGMDFNKWVRQGVSYTNEAGEAYLV
KKMEQEREQDRQDAEAAAAAAAGGGEASEKSRIKLTRAADIDFVKAQMEM
VTAWVKTEKVEGSGKGTEEEVREAARRFKELSLTRTNAFLRRVLFEAIGA
AYPEIVTEARNNQVILMRLSEAEKKERDAAREAARQAKLTSKVGMRLVFK
AIGACGKPLVVHNGMHDLLFMMSAFNKPLPETLIDLKGQLSECFPNTIIY
DTKYISTREELLGKTLGTDTGVEGLYHTLVVEEDKKEKGAGIGPKLVLAE
GFEKYAGGGEGGGGGGYAHEAGYDAYLTGAIFARMRELLKEGGKEREVAM
KVFNYRSLFETNLGGNDELVYRKEGQLVFHLGWRKEDGTRLNDDSLMKVF
GERAASVSILWVDDLSAFAVVNGEEGLKEEDVMGGLTGPAAAVVRVTPYK
KWLEGKEAKERVGSGRRDGGEDDDVAGALAWIMKRTLRLLGLKPGEREGQ
VGKRLRSA* back to topmRNA from alignment at chr2:494385..496977+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G01680.1 ID=NO02G01680.1|Name=NO02G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2593bp|location=Sequence derived from alignment at chr2:494385..496977+ (Nannochloropsis oceanica)
ATGGACGTGACGAAGGAGAATTTTGCCGAGACCCTGCCCGAGCTCGAGGT
GGCACTGCAGGACTGCGAGTTCGCGACCATCGACTTCGAGATGTCGGGAA
TCAGTTTGCCTGGGAATAGCGGTTCTTCCCGCCCTAATTATGGCGACACA
CCACAGGAGAGGTATGCCAAAACGTACCCTATCAGCTCTCGTTACAATAT
CGTGCAGATGGGCGTCTGTATTTTTAGCAAAGTGCCAGACGAGAAGACAA
AGAGCAAGAAGGGGGAAGAGGCCAAAAAGGAAACTTTAATCGCACGGCCA
TTCAATTTTTACACTTTTGCCGCAGAGGGGGAGGACGTGGTCCTGAGCCT
GTCTGCGATGCATTTTTTGAAGGACCAAGGGATGGACTTCAATAAATGGG
TTCGACAGGGCGTATCGTACACAAATGAGGCAGGCGAGGCGTATTTGGTG
AAGAAAATGGAGCAGGAACGGGAGCAGGACCGACAGGACGCCGAGGCAGC
TGCAGCAGCAGCAGCGGGAGGAGGAGAAGCGTCGGAAAAGAGCAGGATAA
AGCTGACAAGGGCAGCAGATATCGACTTCGTCAAGGCCCAGATGGAGATG
GTTACAGCGTGGGTTAAGACTGAAAAGGTCGAGGGGAGTGGGAAAGGGAC
AGAGGAGGAAGTGAGGGAGGCTGCCCGCAGATTCAAGGAGTTGAGCTTGA
CGCGGACGAATGCGTTTTTGCGTCGGGTGTTGTTTGAAGCAATTGGCGCG
GCGTATCCGGAGATAGTGACGGAGGCCAGGAATAACCAGGTGATATTAAT
GAGGCTGTCGGAGGCGGAGAAGAAGGAGAGAGACGCTGCCAGGGAGGCGG
CGAGGCAGGCCAAGTTGACCAGTAAGGTGGGCATGCGCCTGGTGTTCAAG
GCGATTGGCGCGTGTGGTAAACCGTTGGTGGTCCACAATGGGATGCACGA
CTTGCTCTTCATGATGTCTGCATTCAACAAGCCACTTCCCGAGACCTTGA
TAGACTTGAAAGGGCAGCTGTCGGAATGCTTCCCGAATACGATAATTTAC
GATACGAAGTACATCTCGACGAGGGAAGAGTTGTTGGGCAAAACCTTGGG
GACGGATACGGGCGTGGAGGGGCTGTATCATACCTTGGTGGTAGAGGAGG
ACAAGAAGGAGAAAGGGGCTGGGATCGGTCCGAAGTTGGTCTTGGCGGAG
GGGTTTGAGAAATATGCGGGAGGAGGGGAGGGGGGGGGGGGGGGAGGGTA
TGCACATGAAGCGGGGTATGATGCTTATTTGACGGGGGCAATTTTTGCGA
GAATGCGAGAGTTGTTGAAGGAGGGAGGGAAGGAGCGGGAGGTGGCCATG
AAGGTGTTCAATTACCGGAGTTTGTTCGAGACGAATCTCGGGGGAAATGA
TGAGTTGGTGTACCGGAAGGAGGGGCAGTTGGTGTTTCATTTGGGGTGGA
GGAAGGAGGATGGCACAAGATTGAATGACGATTCCTTGATGAAAGTATTT
GGAGAGCGGGCGGCGAGTGTCTCAATCTTGTGGGTTGATGACTTGTCGGC
GTTTGCTGTCGTAAATGGAGAGGAGGGCTTGAAGGAGGAAGACGTGATGG
GCGGGCTTACGGGGCCGGCAGCGGCCGTCGTGCGGGTGACGCCTTATAAG
AAATGGTTGGAAGGGAAAGAGGCGAAAGAAAGGGTCGGGAGTGGACGAAG
GGATGGAGGGGAAGATGATGATGTGGCGGGAGCGTTGGCTTGGATCATGA
AGAGGACGTTGCGGCTGCTGGGGTTGAAGCCGGGGGAGAGGGAGGGACAA
GTTGGGAAGCGCTTGCGTAGTGCCTAGGGGACGACAGGGATAATAAGATT
GCTTTAAATTGAGAATTTAGACGGAATCAAGGACTAACATAATCTGCCAA
ATTAGGCCATGTATTAGATAAAATGCGTCATGTCGAGATCTGAGGTAGAG
AGACAAGAGGCGGCTGAGTAAAAGATTAGGTAGAGAAGATGTAGCTATAG
CAATAGCTCTCAGCAGGTCTTCCAGAAGGCAATGAACAGAGGAAAGAAGG
ATGGCTTTTTATCCTTCTCCTACTATCTCTAATCAGCAATAGGGAAAGAG
GGAGGGAGGGAATGCGAGAGGGGGGAGGAAGGGAGGATCGCTGATCGCCG
ACACTACCTCATGTTTTCTCGGCGACCGACACAGATCAAGAAATCGAAAG
AAAAGTGGTCGACAAAATTACAAGTGACTGTCAGGGAGGGGGGTTGGTTC
CCTTTTTGGTGCAGGACAAGAACATCCAATTGGAGAATCATTTCAGGTAG
AAACGAACCATACTACTCCGGGCTCTCCTATACATGCGGTGCGTAGCCCC
ATATAACGACAGACAGCTGCATTGGTGTTCACTATGTCTGCGGTTGTCGA
GATAACAGAAAACTATTTCTTCGGGCAAACCGTGCCTTCTCATACGAGCT
CGTAAGAAAGGTGCTCGAGACTGACGGGCCTGAGGCGTGCTTTGGACAAG
TCGATCACTGCACTCTTTGAGAAGGCAAAGGAACTTACTGAGAACAGATT
ATGTATGTATTGAACAACGACACAACCAATATCGCCGTGGTAA back to topCoding sequence (CDS) from alignment at chr2:494385..496977+ >NO02G01680.1 ID=NO02G01680.1|Name=NO02G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=1827bp|location=Sequence derived from alignment at chr2:494385..496977+ (Nannochloropsis oceanica)
ATGGACGTGACGAAGGAGAATTTTGCCGAGACCCTGCCCGAGCTCGAGGT
GGCACTGCAGGACTGCGAGTTCGCGACCATCGACTTCGAGATGTCGGGAA
TCAGTTTGCCTGGGAATAGCGGTTCTTCCCGCCCTAATTATGGCGACACA
CCACAGGAGAGGTATGCCAAAACGTACCCTATCAGCTCTCGTTACAATAT
CGTGCAGATGGGCGTCTGTATTTTTAGCAAAGTGCCAGACGAGAAGACAA
AGAGCAAGAAGGGGGAAGAGGCCAAAAAGGAAACTTTAATCGCACGGCCA
TTCAATTTTTACACTTTTGCCGCAGAGGGGGAGGACGTGGTCCTGAGCCT
GTCTGCGATGCATTTTTTGAAGGACCAAGGGATGGACTTCAATAAATGGG
TTCGACAGGGCGTATCGTACACAAATGAGGCAGGCGAGGCGTATTTGGTG
AAGAAAATGGAGCAGGAACGGGAGCAGGACCGACAGGACGCCGAGGCAGC
TGCAGCAGCAGCAGCGGGAGGAGGAGAAGCGTCGGAAAAGAGCAGGATAA
AGCTGACAAGGGCAGCAGATATCGACTTCGTCAAGGCCCAGATGGAGATG
GTTACAGCGTGGGTTAAGACTGAAAAGGTCGAGGGGAGTGGGAAAGGGAC
AGAGGAGGAAGTGAGGGAGGCTGCCCGCAGATTCAAGGAGTTGAGCTTGA
CGCGGACGAATGCGTTTTTGCGTCGGGTGTTGTTTGAAGCAATTGGCGCG
GCGTATCCGGAGATAGTGACGGAGGCCAGGAATAACCAGGTGATATTAAT
GAGGCTGTCGGAGGCGGAGAAGAAGGAGAGAGACGCTGCCAGGGAGGCGG
CGAGGCAGGCCAAGTTGACCAGTAAGGTGGGCATGCGCCTGGTGTTCAAG
GCGATTGGCGCGTGTGGTAAACCGTTGGTGGTCCACAATGGGATGCACGA
CTTGCTCTTCATGATGTCTGCATTCAACAAGCCACTTCCCGAGACCTTGA
TAGACTTGAAAGGGCAGCTGTCGGAATGCTTCCCGAATACGATAATTTAC
GATACGAAGTACATCTCGACGAGGGAAGAGTTGTTGGGCAAAACCTTGGG
GACGGATACGGGCGTGGAGGGGCTGTATCATACCTTGGTGGTAGAGGAGG
ACAAGAAGGAGAAAGGGGCTGGGATCGGTCCGAAGTTGGTCTTGGCGGAG
GGGTTTGAGAAATATGCGGGAGGAGGGGAGGGGGGGGGGGGGGGAGGGTA
TGCACATGAAGCGGGGTATGATGCTTATTTGACGGGGGCAATTTTTGCGA
GAATGCGAGAGTTGTTGAAGGAGGGAGGGAAGGAGCGGGAGGTGGCCATG
AAGGTGTTCAATTACCGGAGTTTGTTCGAGACGAATCTCGGGGGAAATGA
TGAGTTGGTGTACCGGAAGGAGGGGCAGTTGGTGTTTCATTTGGGGTGGA
GGAAGGAGGATGGCACAAGATTGAATGACGATTCCTTGATGAAAGTATTT
GGAGAGCGGGCGGCGAGTGTCTCAATCTTGTGGGTTGATGACTTGTCGGC
GTTTGCTGTCGTAAATGGAGAGGAGGGCTTGAAGGAGGAAGACGTGATGG
GCGGGCTTACGGGGCCGGCAGCGGCCGTCGTGCGGGTGACGCCTTATAAG
AAATGGTTGGAAGGGAAAGAGGCGAAAGAAAGGGTCGGGAGTGGACGAAG
GGATGGAGGGGAAGATGATGATGTGGCGGGAGCGTTGGCTTGGATCATGA
AGAGGACGTTGCGGCTGCTGGGGTTGAAGCCGGGGGAGAGGGAGGGACAA
GTTGGGAAGCGCTTGCGTAGTGCCTAG back to top
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