NO02G01670.1, NO02G01670.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G01670.1
Unique Name	NO02G01670.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2969
Alignment location	chr2:491843..495600 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:491843..495600 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G01670.1 vs.
Match: EWM30462.1 (Hepatocellular carcinoma-associated antigen 59 [Nannochloropsis gaditana])

HSP 1 Score: 333.6 bits (854), Expect = 6.100e-88
Identity = 184/280 (65.71%), Postives = 227/280 (81.07%), Query Frame = 0

Query:    6 MRRRRADSSDEEEGGNDPGIKQKTLIELREEQRQRKAKLGIQAACTFDTEDGGGYAGKKKGSTTEEEDEEEAERQRSIGEMMESSFTGMKYVKKDEMSVHERIMEQYINEKLGGTKSEAPEAV--RDDLPLSKSTRRDKLLAITEEVNAQGRGPVHSKGGYANDDGGVGEGAPIAFSTGIAEVSLPMEFKLRNIEATEFARQQREEQHLLRQQQGGGKEEDIIGNVTYNYNAHRKDYAISMRARDPKPKAPFKRGDGEGPKGRDTMSDDQVYAKFKKRKY 284
            MRRRRA++SD+EE  N PGIK K L+++REEQ+QRK +LGIQAA T +TE  G    +K+     EE+E+EAE+QRSIGEMMESSFTGMKYV KD+ +VHERIMEQYI E+LG  K EAPE V   + +P SK +RR++LLAITEE++A+ RGP   K   A+ +GGVGEGAPIAFSTGIAEV+LP+EFKL+NIEATE AR  +EEQ LLRQQ  G K+ +IIG++T+NY+ HRK+YAI+MRAR+ KPK  F+R DGEGP+GRDTM+DDQVYAKFKKRKY
Sbjct:    1 MRRRRAENSDDEENDN-PGIKIKKLVQIREEQKQRKVRLGIQAASTLETERAGAGGSRKESKAAAEEEEDEAEQQRSIGEMMESSFTGMKYVTKDDTNVHERIMEQYIEERLGNVKEEAPEVVVPSEAVPPSKVSRREQLLAITEEIHARARGPAGDKA--ADAEGGVGEGAPIAFSTGIAEVALPVEFKLQNIEATERARLLQEEQLLLRQQ--GEKKGEIIGSLTHNYHHHRKEYAINMRAREGKPKGIFRREDGEGPRGRDTMTDDQVYAKFKKRKY 275

The following BLAST results are available for this feature:

BLAST of NO02G01670.1 vs.

BLAST of NO02G01670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30462.1	6.100e-88	65.71	Hepatocellular carcinoma-associated antigen 59 [Na...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G01670	NO02G01670	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G01670.1	NO02G01670.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G01670.1.cds1	NO02G01670.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G01670.1.cds2	NO02G01670.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G01670.1.cds3	NO02G01670.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G01670.1.cds4	NO02G01670.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G01670.1.cds5	NO02G01670.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:491843..495600-
coding sequence from alignment at chr2:491843..495600-

mRNA sequence

>NO02G01670.1 ID=NO02G01670.1|Name=NO02G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2969bp
CATATTTCTCAAACCCCTCCGCCAAGACCAACTTCGGACCGATCCCAGCC
CCTTTCTCCTTCTTGTCCTCCTCTACCACCAAGGTATGATACAGCCCCTC
CACGCCCGTATCCGTCCCCAAGGTTTTGCCCAACAACTCTTCCCTCGTCG
AGATGTACTTCGTATCGTAAATTATCGTATTCGGGAAGCATTCCGACAGC
TGCCCTTTCAAGTCTATCAAGGTCTCGGGAAGTGGCTTGTTGAATGCAGA
CATCATGAAGAGCAAGTCGTGCATCCCATTGTGGACCACCAACGGTTTAC
CACACGCGCCAATCGCCTTGAACACCAGGCGCATGCCCACCTTACTGGTC
AACTTGGCCTGCCTCGCCGCCTCCCTGGCAGCGTCTCTCTCCTTCTTCTC
CGCCTCCGACAGCCTCATTAATATCACCTGGTTATTCCTGGCCTCCGTCA
CTATCTCCGGATACGCCGCGCCAATTGCTTCAAACAACACCCGACGCAAA
AACGCATTCGTCCGCGTCAAGCTCAACTCCTTGAATCTGCGGGCAGCCTC
CCTCACTTCCTCCTCTGTCCCTTTCCCACTCCCCTCGACCTTTTCAGTCT
TAACCCACGCTGTAACCATCTCCATCTGGGCCTTGACGAAGTCGATATCT
GCTGCCCTTGTCAGCTTTATCCTGCTCTTTTCCGACGCTTCTCCTCCTCC
CGCTGCTGCTGCTGCAGCTGCCTCGGCGTCCTGTCGGTCCTGCTCCCGTT
CCTGCTCCATTTTCTTCACCAAATACGCCTCGCCTGCCTCATTTGTGTAC
GATACGCCCTGTCGAACCCATTTATTGAAGTCCATCCCTTGGTCCTTCAA
AAAATGCATCGCAGACAGGCTCAGGACCACGTCCTCCCCCTCTGCGGCAA
AAGTGTAAAAATTGAATGGCCGTGCGATTAAAGTTTCCTTTTTGGCCTCT
TCCCCCTTCTTGCTCTTTGTCTTCTCGTCTGGCACTTTGCTAAAAATACA
GACGCCCATCTGCACGATATTGTAACGAGAGCTGATAGGGTACGTTTTGG
CATACCTCTCCTGTGGTGTGTCGCCATAATTAGGGCGGGAAGAACCGCTA
TTCCCAGGCAAACTGATTCCCGACATCTCGAAGTCGATGGTCGCGAACTC
GCAGTCCTGCAGTGCCACCTCGAGCTCGGGCAGGGTCTCGGCAAAATTCT
CCTTCGTCACGTCCATGGTAAGGATGAGACCGAGAGGGCTAGACGCAAGG
GTGGGGAGGTAGGAGGGTCGTTGTTAGTGTGATTTACCTGTGCATTGTAC
AAGAAAGGGGCGGTTAGCAGGTATGAGAGGCAGTCGGTAGGATAAGTTGG
GAGTCCTGCATCCAATGGGGTGGAGTTTTTTTGACAGTAAGAGGGCTACG
AGGGAATTCAGTTCTTCCACCATGCCCTGTCTCCAGTGGAGTCTCGCATT
GCCACTTCGTCCAATTCATTCGCCATGCTTCCTGCCCTATGGTCTTGCAA
ACGAAATTCATGCACTCATTCGTCTGAGATGAAATAAAAGTATTCGTGGT
AGCCTACCGCTGGTAGAGAGGACCACTAGTAGGCCTGCTGGCACGACAAC
AAATATCCCGGCCCACATCCGTACGTGAAAACCAGAGACCCCTCACGTGG
TAATGGTATGCCCTGTATGGCTCAGTCTTAATGTCGTGTCATTACGTGCA
ACTAGTGGTTGTCAATAATGTCCTCCATAGATGTTATCATAGTTTACCTC
ACAATAAATAGTGTCGATGTTTTTCTCTCACTGGCGGCCACCAGCCGGTT
GCCAGGCCACACACACCTCTACGCAAAAAACATAACCAAAGCTGCACAAA
GGCAGCGCTGTAGCATACACACCTCGTCCTCGAATGCCAGGGCGCTCGTC
TTTATCTCTTTCAGGATAGGTGCAATAATTATTATCACATTGTATAATTA
TATGTTAAATTAATACGCTCCGTAATGAAGGAAGGTCAATCAGGACTACC
TCCTCCCTCAACCCACACACTACACCCCACACAGCGCAGCGGTCATTGCC
ATCATCACGACCATCAAAAGGGTTGGGAATATGAAGGGAAAACAGATGCG
ACGCCGACGTGCAGATAGCTCTGATGAGGAGGAAGGGGGAAACGACCCAG
GCATCAAGCAGAAGACGTTGATAGAGCTACGGGAGGAACAGAGGCAGCGT
AAGGCCAAGCTGGGCATCCAAGCGGCGTGCACTTTCGACACAGAAGATGG
AGGAGGGTATGCCGGTAAGAAGAAAGGCTCGACGACAGAGGAGGAGGATG
AGGAGGAAGCCGAGCGGCAACGGAGCATTGGCGAGATGATGGAATCCAGT
TTTACGGGTATGAAGTACGTCAAGAAGGACGAAATGAGCGTGCACGAGCG
CATCATGGAGCAGTACATAAACGAGAAGCTCGGCGGGACCAAGAGTGAGG
CGCCCGAAGCTGTCCGAGATGACCTGCCCTTATCCAAGTCGACGCGTCGG
GACAAACTTTTGGCAATCACCGAGGAGGTGAATGCGCAAGGTCGCGGGCC
TGTTCACAGCAAGGGAGGGTACGCCAATGACGACGGCGGGGTTGGGGAGG
GGGCTCCCATTGCATTCAGCACGGGGATCGCTGAAGTATCATTGCCCATG
GAGTTTAAGTTGCGGAATATCGAGGCCACAGAATTCGCTCGGCAGCAACG
GGAAGAGCAGCACTTACTCCGGCAGCAGCAGGGCGGGGGGAAGGAAGAAG
ACATCATCGGCAACGTGACGTATAACTACAATGCCCATAGGAAAGACTAC
GCAATCAGCATGCGGGCGCGAGATCCTAAACCAAAGGCTCCTTTCAAGCG
TGGGGATGGCGAAGGGCCTAAGGGCCGGGATACTATGTCAGATGATCAGG
TGTACGCCAAATTTAAGAAAAGGAAATATTAAATGTGCAAAATTAATCAA
AATACTTAATCGAAAAATC

protein sequence of NO02G01670.1

>NO02G01670.1-protein ID=NO02G01670.1-protein|Name=NO02G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MKGKQMRRRRADSSDEEEGGNDPGIKQKTLIELREEQRQRKAKLGIQAAC
TFDTEDGGGYAGKKKGSTTEEEDEEEAERQRSIGEMMESSFTGMKYVKKD
EMSVHERIMEQYINEKLGGTKSEAPEAVRDDLPLSKSTRRDKLLAITEEV
NAQGRGPVHSKGGYANDDGGVGEGAPIAFSTGIAEVSLPMEFKLRNIEAT
EFARQQREEQHLLRQQQGGGKEEDIIGNVTYNYNAHRKDYAISMRARDPK
PKAPFKRGDGEGPKGRDTMSDDQVYAKFKKRKY*

mRNA from alignment at chr2:491843..495600-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G01670.1 ID=NO02G01670.1|Name=NO02G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=3758bp|location=Sequence derived from alignment at chr2:491843..495600- (Nannochloropsis oceanica)
CATATTTCTCAAACCCCTCCGCCAAGACCAACTTCGGACCGATCCCAGCC
CCTTTCTCCTTCTTGTCCTCCTCTACCACCAAGGTATGATACAGCCCCTC
CACGCCCGTATCCGTCCCCAAGGTTTTGCCCAACAACTCTTCCCTCGTCG
AGATGTACTTCGTATCGTAAATTATCGTATTCGGGAAGCATTCCGACAGC
TGCCCTTTCAAGTCTATCAAGGTCTCGGGAAGTGGCTTGTTGAATGCAGA
CATCATGAAGAGCAAGTCGTGCATCCCATTGTGGACCACCAACGGTTTAC
CACACGCGCCAATCGCCTTGAACACCAGGCGCATGCCCACCTTACTGGTC
AACTTGGCCTGCCTCGCCGCCTCCCTGGCAGCGTCTCTCTCCTTCTTCTC
CGCCTCCGACAGCCTCATTAATATCACCTGGTTATTCCTGGCCTCCGTCA
CTATCTCCGGATACGCCGCGCCAATTGCTTCAAACAACACCCGACGCAAA
AACGCATTCGTCCGCGTCAAGCTCAACTCCTTGAATCTGCGGGCAGCCTC
CCTCACTTCCTCCTCTGTCCCTTTCCCACTCCCCTCGACCTTTTCAGTCT
TAACCCACGCTGTAACCATCTCCATCTGGGCCTTGACGAAGTCGATATCT
GCTGCCCTTGTCAGCTTTATCCTGCTCTTTTCCGACGCTTCTCCTCCTCC
CGCTGCTGCTGCTGCAGCTGCCTCGGCGTCCTGTCGGTCCTGCTCCCGTT
CCTGCTCCATTTTCTTCACCAAATACGCCTCGCCTGCCTCATTTGTGTAC
GATACGCCCTGTCGAACCCATTTATTGAAGTCCATCCCTTGGTCCTTCAA
AAAATGCATCGCAGACAGGCTCAGGACCACGTCCTCCCCCTCTGCGGCAA
AAGTGTAAAAATTGAATGGCCGTGCGATTAAAGTTTCCTTTTTGGCCTCT
TCCCCCTTCTTGCTCTTTGTCTTCTCGTCTGGCACTTTGCTAAAAATACA
GACGCCCATCTGCACGATATTGTAACGAGAGCTGATAGGGTACGTTTTGG
CATACCTCTCCTGTGGTGTGTCGCCATAATTAGGGCGGGAAGAACCGCTA
TTCCCAGGCAAACTGATTCCCGACATCTCGAAGTCGATGGTCGCGAACTC
GCAGTCCTGCAGTGCCACCTCGAGCTCGGGCAGGGTCTCGGCAAAATTCT
CCTTCGTCACGTCCATGGTAAGGATGAGACCGAGAGGGCTAGACGCAAGG
GTGGGGAGGTAGGAGGGTCGTTGTTAGTGTGATTTACCTGTGCATTGTAC
AAGAAAGGGGCGGTTAGCAGGTATGAGAGGCAGTCGGTAGGATAAGTTGG
GAGTCCTGCATCCAATGGGGTGGAGTTTTTTTGACAGTAAGAGGGCTACG
AGGGAATTCAGTTCTTCCACCATGCCCTGTCTCCAGTGGAGTCTCGCATT
GCCACTTCGTCCAATTCATTCGCCATGCTTCCTGCCCTATGGTCTTGCAA
ACGAAATTCATGCACTCATTCGTCTGAGATGAAATAAAAGTATTCGTGGT
AGCCTACCGCTGGTAGAGAGGACCACTAGTAGGCCTGCTGGCACGACAAC
AAATATCCCGGCCCACATCCGTACGTGAAAACCAGAGACCCCTCACGTGG
TAATGGTATGCCCTGTATGGCTCAGTCTTAATGTCGTGTCATTACGTGCA
ACTAGTGGTTGTCAATAATGTCCTCCATAGATGTTATCATAGTTTACCTC
ACAATAAATAGTGTCGATGTTTTTCTCTCACTGGCGGCCACCAGCCGGTT
GCCAGGCCACACACACCTCTACGCAAAAAACATAACCAAAGCTGCACAAA
GGCAGCGCTGTAGCATACACACCTCGTCCTCGAATGCCAGGGCGCTCGTC
TTTATCTCTTTCAGGATAGGTGCAATAATTATTATCACATTGTATAATTA
TATGTTAAATTAATACGCTCCGTAATGAAGGAAGGTCAATCAGGACTACC
TCCTCCCTCAACCCACACACTACACCCCACACAGCGCAGCGGTCATTGCC
ATCATCACGACCATCAAAAGGGTTGGGAATATGAAGGGAAAACAGATGCG
ACGCCGACGTGCAGGTAAGGCGCCATCTAAGGTCATGATAATTATCATCA
TCTGACGGGTTCACAGGGGTAGGAGAGTCACCTTGTCCGTCTGTGTGTGA
TTTGGTCTTGCTTCACCCCACACCCAGGCCTCCATTTGTATACGCAACAC
TTACACTTCTCTCATGCACCGTAAATCAAAATCACAGATAGCTCTGATGA
GGAGGAAGGGGGAAACGACCCAGGCATCAAGCAGAAGACGTTGATAGAGG
TATGTGTGAGGGTGGGGTTTGGGCGGTGATGCGACTCTTTGGTATCGAAA
CCAGCTGCCTGGTTGCGCCAGATATCTATATTGCATGCTTGTCTGTTTGT
CACACTGAGGGCTTTTGAACAAGCTCGCCTGCGTGTGGAGTGCATCGACT
ATATCTACATTCGCGCGCACTCACGCTCCCTTGCACACATTCTCAACCCA
GCTACGGGAGGAACAGAGGCAGCGTAAGGCCAAGCTGGGCATCCAAGCGG
CGTGCACTTTCGACACAGAAGATGGAGGAGGGTATGCCGGTAAGAAGAAA
GGCTCGACGACAGAGGAGGAGGATGAGGAGGAAGCCGAGCGGCAACGGAG
CATTGGCGAGGTGAGAAGGGATGCGGGAATGCAGGAGGATGGAGAATTGG
ATTACGAATGAAATGTCTCTGAGACATTTGGGGATTCGTTTTGACTGTGA
CTTGGGGCTAGGAGGGCGAGAGCTGCTGACATTTCTCTTTATTTTCCATA
TTGATTTGGTAGAAAGCGCCCCTGTCCACTCGACGCGAAGGCTTTCCGGA
AATGACACACTTGTACACACATTCCTTCACTTACCCTTAGATGATGGAAT
CCAGTTTTACGGGTATGAAGTACGTCAAGAAGGACGAAATGAGCGTGCAC
GAGCGCATCATGGAGCAGTACATAAACGAGAAGCTCGGCGGGACCAAGAG
TGAGGCGCCCGAAGGTAATTTGTGGTGATAGTATGGTTTTGTTTACATAA
GAACATGTATTCTTACGTCATAGCAGTAGTAGACCAAATTAAGAGCTAGC
AGGTGAACAGCCATTGCCTCCTGTTATTCCCCTCTCCCCCACTCCCCCCC
CCAAATACTGACGTGTACACATACATACATACAATTACATACATACAGCT
GTCCGAGATGACCTGCCCTTATCCAAGTCGACGCGTCGGGACAAACTTTT
GGCAATCACCGAGGAGGTGAATGCGCAAGGTCGCGGGCCTGTTCACAGCA
AGGGAGGGTACGCCAATGACGACGGCGGGGTTGGGGAGGGGGCTCCCATT
GCATTCAGCACGGGGATCGCTGAAGTATCATTGCCCATGGAGTTTAAGTT
GCGGAATATCGAGGCCACAGAATTCGCTCGGCAGCAACGGGAAGAGCAGC
ACTTACTCCGGCAGCAGCAGGGCGGGGGGAAGGAAGAAGACATCATCGGC
AACGTGACGTATAACTACAATGCCCATAGGAAAGACTACGCAATCAGCAT
GCGGGCGCGAGATCCTAAACCAAAGGCTCCTTTCAAGCGTGGGGATGGCG
AAGGGCCTAAGGGCCGGGATACTATGTCAGATGATCAGGTGTACGCCAAA
TTTAAGAAAAGGAAATATTAAATGTGCAAAATTAATCAAAATACTTAATC
GAAAAATC

Coding sequence (CDS) from alignment at chr2:491843..495600-

>NO02G01670.1 ID=NO02G01670.1|Name=NO02G01670.1|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at chr2:491843..495600- (Nannochloropsis oceanica)
ATGAAGGGAAAACAGATGCGACGCCGACGTGCAGATAGCTCTGATGAGGA
GGAAGGGGGAAACGACCCAGGCATCAAGCAGAAGACGTTGATAGAGCTAC
GGGAGGAACAGAGGCAGCGTAAGGCCAAGCTGGGCATCCAAGCGGCGTGC
ACTTTCGACACAGAAGATGGAGGAGGGTATGCCGGTAAGAAGAAAGGCTC
GACGACAGAGGAGGAGGATGAGGAGGAAGCCGAGCGGCAACGGAGCATTG
GCGAGATGATGGAATCCAGTTTTACGGGTATGAAGTACGTCAAGAAGGAC
GAAATGAGCGTGCACGAGCGCATCATGGAGCAGTACATAAACGAGAAGCT
CGGCGGGACCAAGAGTGAGGCGCCCGAAGCTGTCCGAGATGACCTGCCCT
TATCCAAGTCGACGCGTCGGGACAAACTTTTGGCAATCACCGAGGAGGTG
AATGCGCAAGGTCGCGGGCCTGTTCACAGCAAGGGAGGGTACGCCAATGA
CGACGGCGGGGTTGGGGAGGGGGCTCCCATTGCATTCAGCACGGGGATCG
CTGAAGTATCATTGCCCATGGAGTTTAAGTTGCGGAATATCGAGGCCACA
GAATTCGCTCGGCAGCAACGGGAAGAGCAGCACTTACTCCGGCAGCAGCA
GGGCGGGGGGAAGGAAGAAGACATCATCGGCAACGTGACGTATAACTACA
ATGCCCATAGGAAAGACTACGCAATCAGCATGCGGGCGCGAGATCCTAAA
CCAAAGGCTCCTTTCAAGCGTGGGGATGGCGAAGGGCCTAAGGGCCGGGA
TACTATGTCAGATGATCAGGTGTACGCCAAATTTAAGAAAAGGAAATATT
AA

Synonyms

Publications