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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:461888..463949 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G01560.1 vs.
Match: EWM30471.1 (short-chain dehydrogenase [Nannochloropsis gaditana]) HSP 1 Score: 479.6 bits (1233), Expect = 9.000e-132 Identity = 242/354 (68.36%), Postives = 297/354 (83.90%), Query Frame = 0
Query: 2 KLPGLGSWQAIGAGVVAASLFAGPLREIYLYVPPLTAAVAGFSVLPHGGLAQRVILATMGGMSASAFGYHQSRRKLPACPLLPPGEKELALVTGASSGIGREISLELAKKGFGLVLVARRADKLNELAADIQMTSEPTLQNKIPVHIVSADLTKPDAAQHLFNTVVLEKGLRVTALINNAGLGHTESFINMSISKIEEIIHLNTLALTTLTRLFGSEMAKRGRGRIMSVSSIAGAAPGPLVAVYSATKAFVTSFTLAIQHELEPLGVSITNLVPGATFTEFQGRAEAHAAMAFSMPGLAMSADRVARAGVKGMLRGDSIVIPGVVNQGFVLATAIFPAKLMRMVTQMAWSEMPM 356
K+ G GSWQA+GAG++A SL AGP R+I LYVPP+TA + G++ LPHGGL QR++L TMG +SA AFG+H RR+ P CP L GE+ELAL+TGASSGIGREISLELA++GFG++LVARRADKL ELA+DI+ + +P+HIV ADL+ P+AA+ ++ +VV EKGL+V+AL+NNAG+G+T+SF+ M +KIEEI+HLN L+LT L LFG EMA RGRGRIM VSSIAGAAPGPLVAVYSA+KAFV+SFTLAIQHELEP GVS+TNL+PGATFTEFQ RA A AA AFS+PGLAM ADRVAR GV GMLRGDS+V+PG+VNQ FVLATA+ P KL+R+VT +AWSE+P+
Sbjct: 5 KIAGPGSWQALGAGLLAISLVAGPSRQIQLYVPPVTALLCGYAALPHGGLGQRIVLGTMGALSAGAFGFHHLRRRHPICPALSQGEEELALITGASSGIGREISLELARRGFGVILVARRADKLQELASDIRALLADR-KRMVPIHIVPADLSCPEAARRVYESVVREKGLQVSALVNNAGVGYTDSFLKMPTAKIEEIVHLNALSLTQLCWLFGQEMASRGRGRIMCVSSIAGAAPGPLVAVYSASKAFVSSFTLAIQHELEPGGVSVTNLLPGATFTEFQARAHAQAAAAFSVPGLAMPADRVAREGVTGMLRGDSVVVPGLVNQAFVLATAVLPPKLLRLVTSLAWSEVPI 357
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G01560.1 ID=NO02G01560.1|Name=NO02G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1904bp TCAGACACGTCTATCTAAACGCATCGATCCAAAAAATGAAGCTGCCGGGG TTGGGTAGCTGGCAAGCTATCGGCGCTGGTGTGGTAGCCGCGTCGTTGTT TGCCGGCCCACTGCGTGAAATTTACCTCTACGTCCCCCCTTTAACGGCCG CCGTCGCAGGCTTTTCGGTCCTCCCACATGGCGGGCTGGCGCAACGAGTC ATACTGGCCACCATGGGCGGCATGAGCGCCAGCGCTTTTGGATATCATCA ATCAAGACGAAAGCTTCCGGCTTGTCCGTTGCTGCCTCCTGGCGAAAAAG AGCTGGCGTTAGTGACGGGGGCATCAAGCGGCATCGGGCGTGAAATCAGT CTTGAGCTCGCCAAGAAAGGGTTCGGCCTTGTCCTTGTCGCTCGCCGCGC CGACAAGCTTAATGAGTTAGCGGCAGACATTCAAATGACCAGTGAACCGA CTTTACAAAATAAAATACCCGTTCATATCGTGTCTGCAGACTTGACCAAG CCTGACGCTGCCCAGCACCTATTCAATACAGTAGTACTCGAGAAAGGACT GAGGGTCACTGCTCTCATCAATAACGCCGGCCTCGGACACACCGAATCTT TCATTAACATGTCCATCTCAAAAATTGAAGAGATTATTCATCTGAACACC TTGGCTCTCACGACTCTTACACGTCTCTTCGGGTCAGAAATGGCGAAGCG AGGCCGAGGACGCATCATGTCAGTCTCATCGATCGCAGGCGCTGCTCCTG GCCCGCTCGTTGCCGTTTACAGCGCTACAAAGGCATTCGTCACTTCTTTT ACATTGGCGATTCAACATGAACTGGAACCCTTGGGGGTATCAATCACGAA TTTGGTCCCTGGGGCGACGTTTACGGAGTTTCAGGGGCGGGCAGAAGCGC ATGCAGCGATGGCGTTCTCGATGCCTGGCCTAGCGATGTCTGCTGATCGA GTGGCACGGGCAGGGGTGAAAGGGATGCTACGAGGGGATAGTATCGTCAT ACCTGGAGTGGTGAATCAGGGCTTTGTATTAGCGACGGCAATATTTCCCG CGAAGTTAATGAGGATGGTTACCCAGATGGCCTGGAGCGAGATGCCGATG TTGGGACGGAAGAAGGGAGGAATGGGAGGAGATGGGAGGAAGTGATAGGT ATGAAATCAAAAAGAGACATGGGGACAAAGTACGACGGTGCAGTGGCAAT CCTGAATTTTATTTATTGTTGTAACTTGTGGAATCTTCTCTTTTCGTTTG GTTAATTTACTTCCATTTGTTGTTTTGATCTCTTGATTTGAAAAGAACAA TTTGGTAAGCATTCGGGCTCAAGCCATTCCTTCTTCAGAACCTAGTCACA TGATGTGTTTAACACCGAGAATCGTCTAAAGTCATCCCCTCCTTCGCCTG TACTTCCTCTTCCACCACCCACCCGTGCCCGCCTCCACCCACCTTTCCAT TGTCCTCCTTCCCTTCCTCTTCTTCTTCATCCCCCCTCTTCCCACCCTTC CTCAACCTCCCCGAGTCCCACAAGCCCCTGATCTCCTTCCTCAACAGATT CAATTTGACCGGCTTGGTAATAAACCCGTCCGCGCCCGCCAAGGCACACT CCTGCTTCTCCCTATCCAGAACCAACGCCGAAACCACCACGATGGGCATG GAAGCCAACCGCGGATCACTGTGCCCCCTCAAGGTTTTCAACACATCAAT GCCATGCATATCAGGTAACTGCAAATCCAGCAGTATCAAATCAAAACTCG GGTCAATTCCTGTCAGTGCCGCCGTCCCCGTCTCCACGAAGACCACCCGA TGTCCATCCTGCTGCAACATCCCTCCCAACACGATCTGGTTCACCAATAT GTCCTCCACAGACAAAATCTTCAACTCCCTCACCGGCGGAGCCTCCCCCC CCGC back to topprotein sequence of NO02G01560.1 >NO02G01560.1-protein ID=NO02G01560.1-protein|Name=NO02G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp MKLPGLGSWQAIGAGVVAASLFAGPLREIYLYVPPLTAAVAGFSVLPHGG LAQRVILATMGGMSASAFGYHQSRRKLPACPLLPPGEKELALVTGASSGI GREISLELAKKGFGLVLVARRADKLNELAADIQMTSEPTLQNKIPVHIVS ADLTKPDAAQHLFNTVVLEKGLRVTALINNAGLGHTESFINMSISKIEEI IHLNTLALTTLTRLFGSEMAKRGRGRIMSVSSIAGAAPGPLVAVYSATKA FVTSFTLAIQHELEPLGVSITNLVPGATFTEFQGRAEAHAAMAFSMPGLA MSADRVARAGVKGMLRGDSIVIPGVVNQGFVLATAIFPAKLMRMVTQMAW SEMPMLGRKKGGMGGDGRK* back to topmRNA from alignment at chr2:461888..463949- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G01560.1 ID=NO02G01560.1|Name=NO02G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2062bp|location=Sequence derived from alignment at chr2:461888..463949- (Nannochloropsis oceanica) TCAGACACGTCTATCTAAACGCATCGATCCAAAAAATGAAGCTGCCGGGG
TTGGGTAGCTGGCAAGGTGCGTAAGGGTTTTCATTTCAGCCTTCTCCGCA
TCATCGCCATCGCCTGCATGGCATGGCATTCAATGCAACTTGCTTCTTCC
ATGCTTGCTTTGATGGTTTTTACATCGGTCCGCTTTGATCTCGGTGTACA
CTCCTTCCCCATACGACATCACAGCTATCGGCGCTGGTGTGGTAGCCGCG
TCGTTGTTTGCCGGCCCACTGCGTGAAATTTACCTCTACGTCCCCCCTTT
AACGGCCGCCGTCGCAGGCTTTTCGGTCCTCCCACATGGCGGGCTGGCGC
AACGAGTCATACTGGCCACCATGGGCGGCATGAGCGCCAGCGCTTTTGGA
TATCATCAATCAAGACGAAAGCTTCCGGCTTGTCCGTTGCTGCCTCCTGG
CGAAAAAGAGCTGGCGTTAGTGACGGGGGCATCAAGCGGCATCGGGCGTG
AAATCAGTCTTGAGCTCGCCAAGAAAGGGTTCGGCCTTGTCCTTGTCGCT
CGCCGCGCCGACAAGCTTAATGAGTTAGCGGCAGACATTCAAATGACCAG
TGAACCGACTTTACAAAATAAAATACCCGTTCATATCGTGTCTGCAGACT
TGACCAAGCCTGACGCTGCCCAGCACCTATTCAATACAGTAGTACTCGAG
AAAGGACTGAGGGTCACTGCTCTCATCAATAACGCCGGCCTCGGACACAC
CGAATCTTTCATTAACATGTCCATCTCAAAAATTGAAGAGATTATTCATC
TGAACACCTTGGCTCTCACGACTCTTACACGTCTCTTCGGGTCAGAAATG
GCGAAGCGAGGCCGAGGACGCATCATGTCAGTCTCATCGATCGCAGGCGC
TGCTCCTGGCCCGCTCGTTGCCGTTTACAGCGCTACAAAGGCATTCGTCA
CTTCTTTTACATTGGCGATTCAACATGAACTGGAACCCTTGGGGGTATCA
ATCACGAATTTGGTCCCTGGGGCGACGTTTACGGAGTTTCAGGGGCGGGC
AGAAGCGCATGCAGCGATGGCGTTCTCGATGCCTGGCCTAGCGATGTCTG
CTGATCGAGTGGCACGGGCAGGGGTGAAAGGGATGCTACGAGGGGATAGT
ATCGTCATACCTGGAGTGGTGAATCAGGGCTTTGTATTAGCGACGGCAAT
ATTTCCCGCGAAGTTAATGAGGATGGTTACCCAGATGGCCTGGAGCGAGA
TGCCGATGTTGGGACGGAAGAAGGGAGGAATGGGAGGAGATGGGAGGAAG
TGATAGGTATGAAATCAAAAAGAGACATGGGGACAAAGTACGACGGTGCA
GTGGCAATCCTGAATTTTATTTATTGTTGTAACTTGTGGAATCTTCTCTT
TTCGTTTGGTTAATTTACTTCCATTTGTTGTTTTGATCTCTTGATTTGAA
AAGAACAATTTGGTAAGCATTCGGGCTCAAGCCATTCCTTCTTCAGAACC
TAGTCACATGATGTGTTTAACACCGAGAATCGTCTAAAGTCATCCCCTCC
TTCGCCTGTACTTCCTCTTCCACCACCCACCCGTGCCCGCCTCCACCCAC
CTTTCCATTGTCCTCCTTCCCTTCCTCTTCTTCTTCATCCCCCCTCTTCC
CACCCTTCCTCAACCTCCCCGAGTCCCACAAGCCCCTGATCTCCTTCCTC
AACAGATTCAATTTGACCGGCTTGGTAATAAACCCGTCCGCGCCCGCCAA
GGCACACTCCTGCTTCTCCCTATCCAGAACCAACGCCGAAACCACCACGA
TGGGCATGGAAGCCAACCGCGGATCACTGTGCCCCCTCAAGGTTTTCAAC
ACATCAATGCCATGCATATCAGGTAACTGCAAATCCAGCAGTATCAAATC
AAAACTCGGGTCAATTCCTGTCAGTGCCGCCGTCCCCGTCTCCACGAAGA
CCACCCGATGTCCATCCTGCTGCAACATCCCTCCCAACACGATCTGGTTC
ACCAATATGTCCTCCACAGACAAAATCTTCAACTCCCTCACCGGCGGAGC
CTCCCCCCCCGC back to topCoding sequence (CDS) from alignment at chr2:461888..463949- >NO02G01560.1 ID=NO02G01560.1|Name=NO02G01560.1|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr2:461888..463949- (Nannochloropsis oceanica) ATGAAGCTGCCGGGGTTGGGTAGCTGGCAAGCTATCGGCGCTGGTGTGGT AGCCGCGTCGTTGTTTGCCGGCCCACTGCGTGAAATTTACCTCTACGTCC CCCCTTTAACGGCCGCCGTCGCAGGCTTTTCGGTCCTCCCACATGGCGGG CTGGCGCAACGAGTCATACTGGCCACCATGGGCGGCATGAGCGCCAGCGC TTTTGGATATCATCAATCAAGACGAAAGCTTCCGGCTTGTCCGTTGCTGC CTCCTGGCGAAAAAGAGCTGGCGTTAGTGACGGGGGCATCAAGCGGCATC GGGCGTGAAATCAGTCTTGAGCTCGCCAAGAAAGGGTTCGGCCTTGTCCT TGTCGCTCGCCGCGCCGACAAGCTTAATGAGTTAGCGGCAGACATTCAAA TGACCAGTGAACCGACTTTACAAAATAAAATACCCGTTCATATCGTGTCT GCAGACTTGACCAAGCCTGACGCTGCCCAGCACCTATTCAATACAGTAGT ACTCGAGAAAGGACTGAGGGTCACTGCTCTCATCAATAACGCCGGCCTCG GACACACCGAATCTTTCATTAACATGTCCATCTCAAAAATTGAAGAGATT ATTCATCTGAACACCTTGGCTCTCACGACTCTTACACGTCTCTTCGGGTC AGAAATGGCGAAGCGAGGCCGAGGACGCATCATGTCAGTCTCATCGATCG CAGGCGCTGCTCCTGGCCCGCTCGTTGCCGTTTACAGCGCTACAAAGGCA TTCGTCACTTCTTTTACATTGGCGATTCAACATGAACTGGAACCCTTGGG GGTATCAATCACGAATTTGGTCCCTGGGGCGACGTTTACGGAGTTTCAGG GGCGGGCAGAAGCGCATGCAGCGATGGCGTTCTCGATGCCTGGCCTAGCG ATGTCTGCTGATCGAGTGGCACGGGCAGGGGTGAAAGGGATGCTACGAGG GGATAGTATCGTCATACCTGGAGTGGTGAATCAGGGCTTTGTATTAGCGA CGGCAATATTTCCCGCGAAGTTAATGAGGATGGTTACCCAGATGGCCTGG AGCGAGATGCCGATGTTGGGACGGAAGAAGGGAGGAATGGGAGGAGATGG GAGGAAGTGA back to top
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