NO02G01560.1, NO02G01560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01560.1
Unique NameNO02G01560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1904
Alignment locationchr2:461888..463949 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:461888..463949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G01560.1 vs.
Match: EWM30471.1 (short-chain dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 479.6 bits (1233), Expect = 9.000e-132
Identity = 242/354 (68.36%), Postives = 297/354 (83.90%), Query Frame = 0
Query:    2 KLPGLGSWQAIGAGVVAASLFAGPLREIYLYVPPLTAAVAGFSVLPHGGLAQRVILATMGGMSASAFGYHQSRRKLPACPLLPPGEKELALVTGASSGIGREISLELAKKGFGLVLVARRADKLNELAADIQMTSEPTLQNKIPVHIVSADLTKPDAAQHLFNTVVLEKGLRVTALINNAGLGHTESFINMSISKIEEIIHLNTLALTTLTRLFGSEMAKRGRGRIMSVSSIAGAAPGPLVAVYSATKAFVTSFTLAIQHELEPLGVSITNLVPGATFTEFQGRAEAHAAMAFSMPGLAMSADRVARAGVKGMLRGDSIVIPGVVNQGFVLATAIFPAKLMRMVTQMAWSEMPM 356
            K+ G GSWQA+GAG++A SL AGP R+I LYVPP+TA + G++ LPHGGL QR++L TMG +SA AFG+H  RR+ P CP L  GE+ELAL+TGASSGIGREISLELA++GFG++LVARRADKL ELA+DI+       +  +P+HIV ADL+ P+AA+ ++ +VV EKGL+V+AL+NNAG+G+T+SF+ M  +KIEEI+HLN L+LT L  LFG EMA RGRGRIM VSSIAGAAPGPLVAVYSA+KAFV+SFTLAIQHELEP GVS+TNL+PGATFTEFQ RA A AA AFS+PGLAM ADRVAR GV GMLRGDS+V+PG+VNQ FVLATA+ P KL+R+VT +AWSE+P+
Sbjct:    5 KIAGPGSWQALGAGLLAISLVAGPSRQIQLYVPPVTALLCGYAALPHGGLGQRIVLGTMGALSAGAFGFHHLRRRHPICPALSQGEEELALITGASSGIGREISLELARRGFGVILVARRADKLQELASDIRALLADR-KRMVPIHIVPADLSCPEAARRVYESVVREKGLQVSALVNNAGVGYTDSFLKMPTAKIEEIVHLNALSLTQLCWLFGQEMASRGRGRIMCVSSIAGAAPGPLVAVYSASKAFVSSFTLAIQHELEPGGVSVTNLLPGATFTEFQARAHAQAAAAFSVPGLAMPADRVAREGVTGMLRGDSVVVPGLVNQAFVLATAVLPPKLLRLVTSLAWSEVPI 357          
The following BLAST results are available for this feature:
BLAST of NO02G01560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30471.19.000e-13268.36short-chain dehydrogenase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01560NO02G01560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01560.1NO02G01560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01560.1.cds1NO02G01560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01560.1.cds2NO02G01560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01560.1 ID=NO02G01560.1|Name=NO02G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1904bp
TCAGACACGTCTATCTAAACGCATCGATCCAAAAAATGAAGCTGCCGGGG
TTGGGTAGCTGGCAAGCTATCGGCGCTGGTGTGGTAGCCGCGTCGTTGTT
TGCCGGCCCACTGCGTGAAATTTACCTCTACGTCCCCCCTTTAACGGCCG
CCGTCGCAGGCTTTTCGGTCCTCCCACATGGCGGGCTGGCGCAACGAGTC
ATACTGGCCACCATGGGCGGCATGAGCGCCAGCGCTTTTGGATATCATCA
ATCAAGACGAAAGCTTCCGGCTTGTCCGTTGCTGCCTCCTGGCGAAAAAG
AGCTGGCGTTAGTGACGGGGGCATCAAGCGGCATCGGGCGTGAAATCAGT
CTTGAGCTCGCCAAGAAAGGGTTCGGCCTTGTCCTTGTCGCTCGCCGCGC
CGACAAGCTTAATGAGTTAGCGGCAGACATTCAAATGACCAGTGAACCGA
CTTTACAAAATAAAATACCCGTTCATATCGTGTCTGCAGACTTGACCAAG
CCTGACGCTGCCCAGCACCTATTCAATACAGTAGTACTCGAGAAAGGACT
GAGGGTCACTGCTCTCATCAATAACGCCGGCCTCGGACACACCGAATCTT
TCATTAACATGTCCATCTCAAAAATTGAAGAGATTATTCATCTGAACACC
TTGGCTCTCACGACTCTTACACGTCTCTTCGGGTCAGAAATGGCGAAGCG
AGGCCGAGGACGCATCATGTCAGTCTCATCGATCGCAGGCGCTGCTCCTG
GCCCGCTCGTTGCCGTTTACAGCGCTACAAAGGCATTCGTCACTTCTTTT
ACATTGGCGATTCAACATGAACTGGAACCCTTGGGGGTATCAATCACGAA
TTTGGTCCCTGGGGCGACGTTTACGGAGTTTCAGGGGCGGGCAGAAGCGC
ATGCAGCGATGGCGTTCTCGATGCCTGGCCTAGCGATGTCTGCTGATCGA
GTGGCACGGGCAGGGGTGAAAGGGATGCTACGAGGGGATAGTATCGTCAT
ACCTGGAGTGGTGAATCAGGGCTTTGTATTAGCGACGGCAATATTTCCCG
CGAAGTTAATGAGGATGGTTACCCAGATGGCCTGGAGCGAGATGCCGATG
TTGGGACGGAAGAAGGGAGGAATGGGAGGAGATGGGAGGAAGTGATAGGT
ATGAAATCAAAAAGAGACATGGGGACAAAGTACGACGGTGCAGTGGCAAT
CCTGAATTTTATTTATTGTTGTAACTTGTGGAATCTTCTCTTTTCGTTTG
GTTAATTTACTTCCATTTGTTGTTTTGATCTCTTGATTTGAAAAGAACAA
TTTGGTAAGCATTCGGGCTCAAGCCATTCCTTCTTCAGAACCTAGTCACA
TGATGTGTTTAACACCGAGAATCGTCTAAAGTCATCCCCTCCTTCGCCTG
TACTTCCTCTTCCACCACCCACCCGTGCCCGCCTCCACCCACCTTTCCAT
TGTCCTCCTTCCCTTCCTCTTCTTCTTCATCCCCCCTCTTCCCACCCTTC
CTCAACCTCCCCGAGTCCCACAAGCCCCTGATCTCCTTCCTCAACAGATT
CAATTTGACCGGCTTGGTAATAAACCCGTCCGCGCCCGCCAAGGCACACT
CCTGCTTCTCCCTATCCAGAACCAACGCCGAAACCACCACGATGGGCATG
GAAGCCAACCGCGGATCACTGTGCCCCCTCAAGGTTTTCAACACATCAAT
GCCATGCATATCAGGTAACTGCAAATCCAGCAGTATCAAATCAAAACTCG
GGTCAATTCCTGTCAGTGCCGCCGTCCCCGTCTCCACGAAGACCACCCGA
TGTCCATCCTGCTGCAACATCCCTCCCAACACGATCTGGTTCACCAATAT
GTCCTCCACAGACAAAATCTTCAACTCCCTCACCGGCGGAGCCTCCCCCC
CCGC
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protein sequence of NO02G01560.1

>NO02G01560.1-protein ID=NO02G01560.1-protein|Name=NO02G01560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MKLPGLGSWQAIGAGVVAASLFAGPLREIYLYVPPLTAAVAGFSVLPHGG
LAQRVILATMGGMSASAFGYHQSRRKLPACPLLPPGEKELALVTGASSGI
GREISLELAKKGFGLVLVARRADKLNELAADIQMTSEPTLQNKIPVHIVS
ADLTKPDAAQHLFNTVVLEKGLRVTALINNAGLGHTESFINMSISKIEEI
IHLNTLALTTLTRLFGSEMAKRGRGRIMSVSSIAGAAPGPLVAVYSATKA
FVTSFTLAIQHELEPLGVSITNLVPGATFTEFQGRAEAHAAMAFSMPGLA
MSADRVARAGVKGMLRGDSIVIPGVVNQGFVLATAIFPAKLMRMVTQMAW
SEMPMLGRKKGGMGGDGRK*
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mRNA from alignment at chr2:461888..463949-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01560.1 ID=NO02G01560.1|Name=NO02G01560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2062bp|location=Sequence derived from alignment at chr2:461888..463949- (Nannochloropsis oceanica)
TCAGACACGTCTATCTAAACGCATCGATCCAAAAAATGAAGCTGCCGGGG TTGGGTAGCTGGCAAGGTGCGTAAGGGTTTTCATTTCAGCCTTCTCCGCA TCATCGCCATCGCCTGCATGGCATGGCATTCAATGCAACTTGCTTCTTCC ATGCTTGCTTTGATGGTTTTTACATCGGTCCGCTTTGATCTCGGTGTACA CTCCTTCCCCATACGACATCACAGCTATCGGCGCTGGTGTGGTAGCCGCG TCGTTGTTTGCCGGCCCACTGCGTGAAATTTACCTCTACGTCCCCCCTTT AACGGCCGCCGTCGCAGGCTTTTCGGTCCTCCCACATGGCGGGCTGGCGC AACGAGTCATACTGGCCACCATGGGCGGCATGAGCGCCAGCGCTTTTGGA TATCATCAATCAAGACGAAAGCTTCCGGCTTGTCCGTTGCTGCCTCCTGG CGAAAAAGAGCTGGCGTTAGTGACGGGGGCATCAAGCGGCATCGGGCGTG AAATCAGTCTTGAGCTCGCCAAGAAAGGGTTCGGCCTTGTCCTTGTCGCT CGCCGCGCCGACAAGCTTAATGAGTTAGCGGCAGACATTCAAATGACCAG TGAACCGACTTTACAAAATAAAATACCCGTTCATATCGTGTCTGCAGACT TGACCAAGCCTGACGCTGCCCAGCACCTATTCAATACAGTAGTACTCGAG AAAGGACTGAGGGTCACTGCTCTCATCAATAACGCCGGCCTCGGACACAC CGAATCTTTCATTAACATGTCCATCTCAAAAATTGAAGAGATTATTCATC TGAACACCTTGGCTCTCACGACTCTTACACGTCTCTTCGGGTCAGAAATG GCGAAGCGAGGCCGAGGACGCATCATGTCAGTCTCATCGATCGCAGGCGC TGCTCCTGGCCCGCTCGTTGCCGTTTACAGCGCTACAAAGGCATTCGTCA CTTCTTTTACATTGGCGATTCAACATGAACTGGAACCCTTGGGGGTATCA ATCACGAATTTGGTCCCTGGGGCGACGTTTACGGAGTTTCAGGGGCGGGC AGAAGCGCATGCAGCGATGGCGTTCTCGATGCCTGGCCTAGCGATGTCTG CTGATCGAGTGGCACGGGCAGGGGTGAAAGGGATGCTACGAGGGGATAGT ATCGTCATACCTGGAGTGGTGAATCAGGGCTTTGTATTAGCGACGGCAAT ATTTCCCGCGAAGTTAATGAGGATGGTTACCCAGATGGCCTGGAGCGAGA TGCCGATGTTGGGACGGAAGAAGGGAGGAATGGGAGGAGATGGGAGGAAG TGATAGGTATGAAATCAAAAAGAGACATGGGGACAAAGTACGACGGTGCA GTGGCAATCCTGAATTTTATTTATTGTTGTAACTTGTGGAATCTTCTCTT TTCGTTTGGTTAATTTACTTCCATTTGTTGTTTTGATCTCTTGATTTGAA AAGAACAATTTGGTAAGCATTCGGGCTCAAGCCATTCCTTCTTCAGAACC TAGTCACATGATGTGTTTAACACCGAGAATCGTCTAAAGTCATCCCCTCC TTCGCCTGTACTTCCTCTTCCACCACCCACCCGTGCCCGCCTCCACCCAC CTTTCCATTGTCCTCCTTCCCTTCCTCTTCTTCTTCATCCCCCCTCTTCC CACCCTTCCTCAACCTCCCCGAGTCCCACAAGCCCCTGATCTCCTTCCTC AACAGATTCAATTTGACCGGCTTGGTAATAAACCCGTCCGCGCCCGCCAA GGCACACTCCTGCTTCTCCCTATCCAGAACCAACGCCGAAACCACCACGA TGGGCATGGAAGCCAACCGCGGATCACTGTGCCCCCTCAAGGTTTTCAAC ACATCAATGCCATGCATATCAGGTAACTGCAAATCCAGCAGTATCAAATC AAAACTCGGGTCAATTCCTGTCAGTGCCGCCGTCCCCGTCTCCACGAAGA CCACCCGATGTCCATCCTGCTGCAACATCCCTCCCAACACGATCTGGTTC ACCAATATGTCCTCCACAGACAAAATCTTCAACTCCCTCACCGGCGGAGC CTCCCCCCCCGC
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Coding sequence (CDS) from alignment at chr2:461888..463949-

>NO02G01560.1 ID=NO02G01560.1|Name=NO02G01560.1|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr2:461888..463949- (Nannochloropsis oceanica)
ATGAAGCTGCCGGGGTTGGGTAGCTGGCAAGCTATCGGCGCTGGTGTGGT
AGCCGCGTCGTTGTTTGCCGGCCCACTGCGTGAAATTTACCTCTACGTCC
CCCCTTTAACGGCCGCCGTCGCAGGCTTTTCGGTCCTCCCACATGGCGGG
CTGGCGCAACGAGTCATACTGGCCACCATGGGCGGCATGAGCGCCAGCGC
TTTTGGATATCATCAATCAAGACGAAAGCTTCCGGCTTGTCCGTTGCTGC
CTCCTGGCGAAAAAGAGCTGGCGTTAGTGACGGGGGCATCAAGCGGCATC
GGGCGTGAAATCAGTCTTGAGCTCGCCAAGAAAGGGTTCGGCCTTGTCCT
TGTCGCTCGCCGCGCCGACAAGCTTAATGAGTTAGCGGCAGACATTCAAA
TGACCAGTGAACCGACTTTACAAAATAAAATACCCGTTCATATCGTGTCT
GCAGACTTGACCAAGCCTGACGCTGCCCAGCACCTATTCAATACAGTAGT
ACTCGAGAAAGGACTGAGGGTCACTGCTCTCATCAATAACGCCGGCCTCG
GACACACCGAATCTTTCATTAACATGTCCATCTCAAAAATTGAAGAGATT
ATTCATCTGAACACCTTGGCTCTCACGACTCTTACACGTCTCTTCGGGTC
AGAAATGGCGAAGCGAGGCCGAGGACGCATCATGTCAGTCTCATCGATCG
CAGGCGCTGCTCCTGGCCCGCTCGTTGCCGTTTACAGCGCTACAAAGGCA
TTCGTCACTTCTTTTACATTGGCGATTCAACATGAACTGGAACCCTTGGG
GGTATCAATCACGAATTTGGTCCCTGGGGCGACGTTTACGGAGTTTCAGG
GGCGGGCAGAAGCGCATGCAGCGATGGCGTTCTCGATGCCTGGCCTAGCG
ATGTCTGCTGATCGAGTGGCACGGGCAGGGGTGAAAGGGATGCTACGAGG
GGATAGTATCGTCATACCTGGAGTGGTGAATCAGGGCTTTGTATTAGCGA
CGGCAATATTTCCCGCGAAGTTAATGAGGATGGTTACCCAGATGGCCTGG
AGCGAGATGCCGATGTTGGGACGGAAGAAGGGAGGAATGGGAGGAGATGG
GAGGAAGTGA
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Synonyms
Publications