NO02G01510.2, NO02G01510.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01510.2
Unique NameNO02G01510.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2386
Alignment locationchr2:447085..450133 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:447085..450133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G01510.2 vs.
Match: EWM30476.1 (Fatty acid desaturase type 2 [Nannochloropsis gaditana])

HSP 1 Score: 652.1 bits (1681), Expect = 9.700e-184
Identity = 308/333 (92.49%), Postives = 325/333 (97.60%), Query Frame = 0
Query:   21 MHVYPDKHEVIVSMEPMVEGMLSKLLLPTGEKAWQPSDFVPDLTKEGWEDEVKEFREKAETLPDETLVVLVGDMVTEEALPTYQTLLNTFEGVDDPTGTSPSAWCRWTRGWTSEENRHGDLLNRYLYLTGRVDMRAIECTIQHLISSGFNPKIKKDPYKGFVYTSFQERATKISHQNVARLANSAGDGNLGLICSKIAGDESRHEKAYQAIFQEILKKDPEGGLKSFYELMSDQITMPAVMMTDGHDPDLFEHFSVTAQKLGVYTAVDYANILEYLVETWDIEHMGGLSSEGAKYQEKLCKLAPRYMRLAEMSLDRVKKMPKTPYSWIHGRVA 354
            MHVYPDK EVI S+EPMVEGML+KLLLPTGEKAWQP DFVPDLTKEGWE+EVKEFREKA TLPDETLVVLVGDMVTEEALPTYQTLLNTFEGVDDPTGTSPSAWC+WTRGWTSEENRHGDLLNRYLYLTGRVDMR+IECTIQHLISSGFNPKIKKDPYKGFVYTSFQERATKISHQNVARLAN+AGDGNLGLICSKIAGDESRHEKAYQAIF+EIL +DPEGGLKSFYELM+DQITMPAVMMTDGHDPDLFEHFS+TAQKLGVYTAVDYANIL++LVE WDIEH+GGLS EGA+YQEKLCKL PRY++LAEMSLDRVKKMPKTPYSWIHGR+A
Sbjct:    1 MHVYPDKVEVITSLEPMVEGMLTKLLLPTGEKAWQPQDFVPDLTKEGWEEEVKEFREKAATLPDETLVVLVGDMVTEEALPTYQTLLNTFEGVDDPTGTSPSAWCKWTRGWTSEENRHGDLLNRYLYLTGRVDMRSIECTIQHLISSGFNPKIKKDPYKGFVYTSFQERATKISHQNVARLANNAGDGNLGLICSKIAGDESRHEKAYQAIFKEILNRDPEGGLKSFYELMTDQITMPAVMMTDGHDPDLFEHFSITAQKLGVYTAVDYANILDHLVEIWDIEHIGGLSGEGARYQEKLCKLGPRYLKLAEMSLDRVKKMPKTPYSWIHGRMA 333          
The following BLAST results are available for this feature:
BLAST of NO02G01510.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30476.19.700e-18492.49Fatty acid desaturase type 2 [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01510NO02G01510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01510.2NO02G01510.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01510.2.cds1NO02G01510.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01510.2.cds2NO02G01510.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01510.2.cds3NO02G01510.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01510.2.cds4NO02G01510.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01510.2 ID=NO02G01510.2|Name=NO02G01510.2|organism=Nannochloropsis oceanica|type=mRNA|length=2386bp
GGGGGTTTCGCGCATTCCGAGCCGCTCTCCGAACCACTTCCACCGATTAC
AAGGGTCTTTTTGGCTTTCTAGGACGCATCTGCACCCCGATTTACAGTCA
ACCTCGAGTCATACTAAGGGAAAGGTCGTATTAATATCCGCGAAATGAAC
CATCCATCGATTTTTGGCGCCCTGAACTCCAGAAACACCAGATCAACACG
AACAGCCCCTGGTGACTACGTCGCGTCATCGCCCACGGCCTCATCAAACG
AGTTCGAAGGCTCTAGAGATACAATTCGTCCAGCCCCCATTCACCGCGGT
TCCCGTCCTTTGTGGTGTGCACAGGACAAGCAATACAACATCATACAATT
TATTCGATGACAAAGTCGCGGTGTTTTCGGATGAGGCAGTATGCCGCGTC
GATGATGATGATGCCAAATGCCCGTGTCGCGCATTCGTCGCGAGACCGTG
TCTCGCACTCTCTCCCATGTGCGTGTTGAATGAAGTGATTCACCCGTCTG
CACACTCGTTTCACTTACTCACGTTCTCAGCACGCAGGCATGGACGGGCT
TGTTGATAGCACACGAGCCATTACGGCATTTCACGCCACGTCATGCCAGG
TGTTGGACCGAGTCGGCTTCATAAGTTTTTCGAGAAGCCCCTCCTTGCAC
TTGGCCGTCCCCCACTACGGCATGTTTTTTGCCTGATGACGGAATCGCGC
AGCGATAAGGCAGTGACAATCCCCTGAGGCGAAGGCGGCGCTTTTCGGTA
CGGGCACGCCAGGGTACTCACACCACACCTCTCCATGGGTTCCCTTTACC
ACCATCAAGACACAGCACACAAGGCAAGCGACATCTCGTCTCGACCTTTT
TTCATTATGGAGAGCAGCAGCAGCACCCAAGGTGCCAAAGCCTTGCTTCG
TGGCACCGTCACGGCCCTGGTCCTTTCCACCAGCCTAGCCTTTGTCGTCC
CCTCCTCCCAGAGCCTCCGCCCGGGCGCTCCTGCATCGTCTCATCGAGTG
GCTCCTCTGCGGGCCGTGGCCATCGAGCCTCCTGCCGTCGCCCCCCCCGC
CCAGGCCGCCAAGCCCGACTGGGAGGCGGAGTTTCGACGCAAGCAGTAAG
TCACTTCCGAGGGAGGGATAGAGAAATGACCTGATGGCTCGTGCGTGTTT
GTACTGTAAGTGGATATATGTATAGCATGAGTAGGTGTGGAGAGGGGAAG
TGTTGGGAATCGGGAGTCTTACTGCGCCACATGTTTTGGTGGGTCACATA
CGCTGCCGCCTTGGCAGGCCGGTTTCCTGGCCCGTGGAATGTATGTCTCA
CCCAAGGAGGGCACATGCGGGAATGTGAGGTGGGCTGCCAACGAGCTGAT
GCACGTCTACCCCGACAAGCACGAAGTCATTGTCAGCATGGAGCCCATGG
TGGAAGGGATGCTCTCGAAGCTCCTCCTCCCCACGGGGGAGAAGGCTTGG
CAACCGTCCGACTTTGTCCCGGACCTGACCAAGGAAGGGTGGGAAGACGA
GGTAAAGGAATTCAGGGAAAAGGCGGAGACGTTGCCGGACGAGACGCTGG
TGGTCTTGGTGGGGGACATGGTGACTGAGGAGGCGTTGCCCACTTACCAG
ACGCTGTTGAACACGTTCGAGGGCGTGGATGACCCCACCGGGACGAGTCC
TTCGGCCTGGTGCCGATGGACACGGGGGTGGACGAGCGAGGAGAACAGGC
ACGGGGATCTGCTCAACCGGTACTTGTACTTGACGGGGCGCGTGGACATG
CGCGCGATCGAGTGCACGATTCAGCACCTGATTTCGAGCGGTTTCAACCC
CAAAATCAAGAAGGATCCGTACAAGGGTTTCGTATACACCTCCTTCCAAG
AGCGAGCAACCAAGATCTCCCATCAGAATGTGGCGCGGCTGGCCAACAGC
GCCGGTGATGGCAATCTGGGTCTGATCTGCAGTAAGATTGCAGGGGATGA
GTCGAGGCACGAGAAGGCATACCAAGCCATCTTCCAGGAGATCCTCAAGA
AGGACCCGGAAGGGGGGTTGAAGAGCTTCTATGAGTTAATGAGTGATCAG
ATCACCATGCCTGCCGTGATGATGACGGACGGCCACGACCCGGACCTCTT
CGAGCACTTCTCGGTCACGGCGCAGAAGCTCGGTGTCTACACGGCAGTGG
ACTACGCCAACATTCTGGAATATTTGGTGGAGACATGGGACATCGAGCAC
ATGGGAGGCCTGTCTTCTGAAGGGGCCAAGTACCAGGAGAAGCTCTGCAA
GCTCGCGCCCCGATACATGAGGCTTGCCGAGATGAGTCTTGACCGGGTGA
AAAAGATGCCCAAGACGCCTTATTCTTGGATCCATGGACGCGTGGCTTAA
GCAGGGAAAGGGGGGAGGGAGGAGGGACGGTGGGTG
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protein sequence of NO02G01510.2

>NO02G01510.2-protein ID=NO02G01510.2-protein|Name=NO02G01510.2|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MYVSPKEGTCGNVRWAANELMHVYPDKHEVIVSMEPMVEGMLSKLLLPTG
EKAWQPSDFVPDLTKEGWEDEVKEFREKAETLPDETLVVLVGDMVTEEAL
PTYQTLLNTFEGVDDPTGTSPSAWCRWTRGWTSEENRHGDLLNRYLYLTG
RVDMRAIECTIQHLISSGFNPKIKKDPYKGFVYTSFQERATKISHQNVAR
LANSAGDGNLGLICSKIAGDESRHEKAYQAIFQEILKKDPEGGLKSFYEL
MSDQITMPAVMMTDGHDPDLFEHFSVTAQKLGVYTAVDYANILEYLVETW
DIEHMGGLSSEGAKYQEKLCKLAPRYMRLAEMSLDRVKKMPKTPYSWIHG
RVA*
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mRNA from alignment at chr2:447085..450133-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01510.2 ID=NO02G01510.2|Name=NO02G01510.2|organism=Nannochloropsis oceanica|type=mRNA|length=3049bp|location=Sequence derived from alignment at chr2:447085..450133- (Nannochloropsis oceanica)
GGGGGTTTCGCGCATTCCGAGCCGCTCTCCGAACCACTTCCACCGATTAC AAGGGTCTTTTTGGCTTTCTAGGACGCATCTGCACCCCGATTTACAGTCA ACCTCGAGTCATACTAAGGGAAAGGTCGTATTAATATCCGCGAAATGAAC CATCCATCGATTTTTGGCGCCCTGAACTCCAGAAACACCAGATCAACACG AACAGCCCCTGGTGACTACGTCGCGTCATCGCCCACGGCCTCATCAAACG AGTTCGAAGGCTCTAGAGATACAATTCGTCCAGCCCCCATTCACCGCGGT TCCCGTCCTTTGTGGTGTGCACAGGACAAGCAATACAACATCATACAATT TATTCGATGACAAAGTCGCGGTGTTTTCGGATGAGGCAGTATGCCGCGTC GATGATGATGATGCCAAATGCCCGTGTCGCGCATTCGTCGCGAGACCGTG TCTCGCACTCTCTCCCATGTGCGTGTTGAATGAAGTGATTCACCCGTCTG CACACTCGTTTCACTTACTCACGTTCTCAGCACGCAGGCATGGACGGGCT TGTTGATAGCACACGAGCCATTACGGCATTTCACGCCACGTCATGCCAGG TGTTGGACCGAGTCGGCTTCATAAGTTTTTCGAGAAGCCCCTCCTTGCAC TTGGCCGTCCCCCACTACGGCATGTTTTTTGCCTGATGACGGAATCGCGC AGCGATAAGGCAGTGACAATCCCCTGAGGCGAAGGCGGCGCTTTTCGGTA CGGGCACGCCAGGGTACTCACACCACACCTCTCCATGGGTTCCCTTTACC ACCATCAAGACACAGCACACAAGGCAAGCGACATCTCGTCTCGACCTTTT TTCATTATGGAGAGCAGCAGCAGCACCCAAGGTGCCAAAGCCTTGCTTCG TGGCACCGTCACGGCCCTGGTCCTTTCCACCAGCCTAGCCTTTGTCGTCC CCTCCTCCCAGAGCCTCCGCCCGGGCGCTCCTGCATCGTCTCATCGAGGT ACGTGTTGTGCTTGCATGCGCACAGTCAGCAGGAGAGCAGGGGGGAAAGC ACCCCGAAGAACACACATGCGTGAGCCTGGCGACAAACAACGAGCACATG CCGACACTCACACGCTCCCGCCCTTACTTCTCTGGCATCACAGTGGCTCC TCTGCGGGCCGTGGCCATCGAGCCTCCTGCCGTCGCCCCCCCCGCCCAGG CCGCCAAGCCCGACTGGGAGGCGGAGTTTCGACGCAAGCAGTAAGTCACT TCCGAGGGAGGGATAGAGAAATGACCTGATGGCTCGTGCGTGTTTGTACT GTAAGTGGATATATGTATAGCATGAGTAGGTGTGGAGAGGGGAAGTGTTG GGAATCGGGAGTCTTACTGCGCCACATGTTTTGGTGGGTCACATACGCTG CCGCCTTGGCAGGCCGGTTTCCTGGCCCGTGGAATGTATGTCTCACCCAA GGAGGGCACATGCGGGAATGTGAGGTGGTAAGAGAAGGTTTGGAAGGTCT ATTAAAGAATGTCGGTCTTGTCTGTGAAGGCCGGCAGACAGGGCGCACGT CTGTCAGCTGCTGTCTTCTGCTTCTCTCCCTCACGTTGTTCATAAGCAGG TGGGGATCAAAAAGTAGCCTTTTCCTCCCCTCGCACCCACTCACGTCCTC CCCTCCTGTCCTCCCTCCCTCTTTCCCTCCACTGATGCACAGGGCTGCCA ACGAGCTGATGCACGTCTACCCCGACAAGCACGAAGTCATTGTCAGCATG GAGCCCATGGTGGAAGGGATGCTCTCGAAGCTCCTCCTCCCCACGGGGGA GAAGGCTTGGCAACCGTCCGACTTTGTCCCGGACCTGACCAAGGAAGGGT GGGAAGACGAGGTAAAGGAATTCAGGGAAAAGGCGGAGACGTTGCCGGAC GAGACGCTGGTGGTCTTGGTGGGGGACATGGTGACTGAGGAGGCGTTGCC CACTTACCAGACGCTGTTGAACACGTTCGAGGGCGTGGATGACCCCACCG GGACGAGTCCTTCGGCCTGGTGCCGATGGACACGGGGGTGGACGAGCGAG GAGAACAGGCACGGGGATCTGCTCAACCGGTACTTGTACTTGACGGGGCG CGTGGACATGCGCGCGATCGAGTGCACGATTCAGCACCTGGTACGTGGGG ATGGGAGGGAGGGAGAGAGGGAGGGATGGAGGAAGGCTCCTGTTCTTGTG TTCCCCCCCTTCGTCTCGCGCGATGTCTAACTCATTCTTCCCACCCTCCC TCCCTCTGCGTCCGTAAATTAGATTTCGAGCGGTTTCAACCCCAAAATCA AGAAGGATCCGTACAAGGGTTTCGTATACACCTCCTTCCAAGAGCGAGCA ACCAAGATCTCCCATCAGAATGTGGCGCGGCTGGCCAACAGCGCCGGTGA TGGCAATCTGGGTCTGATCTGCAGTAAGATTGCAGGGGATGAGTCGAGGC ACGAGAAGGCATACCAAGCCATCTTCCAGGAGATCCTCAAGAAGGACCCG GAAGGGGGGTTGAAGAGCTTCTATGAGTTAATGAGTGATCAGGTAGGGAG GGCGGAGGAGAGGGAGGGGGAAAGGGAGGGAGGTAGGTACGCATTAGGAG GCAGGAGGAAGGGAACGACACAAGTACTTTCACCATGGGCCAAGATACGG CTGTTTACCTTTCCCTCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCC TCCCTCATCTCAGATCACCATGCCTGCCGTGATGATGACGGACGGCCACG ACCCGGACCTCTTCGAGCACTTCTCGGTCACGGCGCAGAAGCTCGGTGTC TACACGGCAGTGGACTACGCCAACATTCTGGAATATTTGGTGGAGACATG GGACATCGAGCACATGGGAGGCCTGTCTTCTGAAGGGGCCAAGTACCAGG AGAAGCTCTGCAAGCTCGCGCCCCGATACATGAGGCTTGCCGAGATGAGT CTTGACCGGGTGAAAAAGATGCCCAAGACGCCTTATTCTTGGATCCATGG ACGCGTGGCTTAAGCAGGGAAAGGGGGGAGGGAGGAGGGACGGTGGGTG
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Coding sequence (CDS) from alignment at chr2:447085..450133-

>NO02G01510.2 ID=NO02G01510.2|Name=NO02G01510.2|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at chr2:447085..450133- (Nannochloropsis oceanica)
ATGTATGTCTCACCCAAGGAGGGCACATGCGGGAATGTGAGGTGGGCTGC
CAACGAGCTGATGCACGTCTACCCCGACAAGCACGAAGTCATTGTCAGCA
TGGAGCCCATGGTGGAAGGGATGCTCTCGAAGCTCCTCCTCCCCACGGGG
GAGAAGGCTTGGCAACCGTCCGACTTTGTCCCGGACCTGACCAAGGAAGG
GTGGGAAGACGAGGTAAAGGAATTCAGGGAAAAGGCGGAGACGTTGCCGG
ACGAGACGCTGGTGGTCTTGGTGGGGGACATGGTGACTGAGGAGGCGTTG
CCCACTTACCAGACGCTGTTGAACACGTTCGAGGGCGTGGATGACCCCAC
CGGGACGAGTCCTTCGGCCTGGTGCCGATGGACACGGGGGTGGACGAGCG
AGGAGAACAGGCACGGGGATCTGCTCAACCGGTACTTGTACTTGACGGGG
CGCGTGGACATGCGCGCGATCGAGTGCACGATTCAGCACCTGATTTCGAG
CGGTTTCAACCCCAAAATCAAGAAGGATCCGTACAAGGGTTTCGTATACA
CCTCCTTCCAAGAGCGAGCAACCAAGATCTCCCATCAGAATGTGGCGCGG
CTGGCCAACAGCGCCGGTGATGGCAATCTGGGTCTGATCTGCAGTAAGAT
TGCAGGGGATGAGTCGAGGCACGAGAAGGCATACCAAGCCATCTTCCAGG
AGATCCTCAAGAAGGACCCGGAAGGGGGGTTGAAGAGCTTCTATGAGTTA
ATGAGTGATCAGATCACCATGCCTGCCGTGATGATGACGGACGGCCACGA
CCCGGACCTCTTCGAGCACTTCTCGGTCACGGCGCAGAAGCTCGGTGTCT
ACACGGCAGTGGACTACGCCAACATTCTGGAATATTTGGTGGAGACATGG
GACATCGAGCACATGGGAGGCCTGTCTTCTGAAGGGGCCAAGTACCAGGA
GAAGCTCTGCAAGCTCGCGCCCCGATACATGAGGCTTGCCGAGATGAGTC
TTGACCGGGTGAAAAAGATGCCCAAGACGCCTTATTCTTGGATCCATGGA
CGCGTGGCTTAA
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Synonyms
Publications