NO02G01500.1, NO02G01500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01500.1
Unique NameNO02G01500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2454
Alignment locationchr2:442735..445520 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:442735..445520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G01500.1 vs.
Match: EWM30474.1 (methionine aminopeptidase [Nannochloropsis gaditana])

HSP 1 Score: 667.9 bits (1722), Expect = 1.900e-188
Identity = 321/376 (85.37%), Postives = 342/376 (90.96%), Query Frame = 0
Query:   19 VLQFLVLVALVLGEPAAAFQPSSPLSPSGTTSSSLQQRGRSRGNVVCKKGGSSSSGPSASKGFGFGAK--AKADKYKYSGRLKPGVLSPIREVPEEIMRPDYALDGVPKARDPPLPWMIEVKSPEDIAAMRASGLVAREVLDAVARQIKVGMTTDEIDMIVHGETVKRGAYPSPLNYHGFPKSCCTSLNEVVCHGIPDVSTVLQDGDIVNVDVTVFYKGYHGDCSETFCVGQVDEAGKKLVKVTYDAWQKAIDFCKPGRPYKDIGAIIEEYVTKEGFTTVREFCGHGLGKVFHTTPNVLHFKNSQPAGVMQPGHTFTIEPMICEGTNKHILWPDKWTATTADGRRSAQFEHTLLITPSGVEALTGRLPTSPKFFWE 393
            V +  VL+ + L   ++AFQPSSP+          Q  GRSRG+++CKKG SS SGP ASKGFGFGAK  AK DK+KY+GRLKPGVLSP R+VP +I+RPDYALDG+PKARDPPLPWMIEVKSPEDIAAMRASGLVAREVLDAV RQIKVGMTTDEID I HGET+KRGAYPSPLNY GFPKSCCTSLNEVVCHGIPDVST LQDGDIVNVDVTV+YKGYHGDCSETFCVG VDEAGK+LVKVTYDAWQKAI+FCKPGRPYKDIGAIIEEYVTKEGFTTVREFCGHG+GKVFHTTPN+LHFKNSQPAGVMQPGHTFTIEPMICEGTNKHILWPDKWTATTADGRRSAQFEHTLLITPSGVEALTGRLPTSPKFFWE
Sbjct:   61 VYRSFVLLVIFLCHLSSAFQPSSPV----------QYWGRSRGDILCKKGSSSGSGPPASKGFGFGAKKEAKGDKFKYTGRLKPGVLSPPRDVPADILRPDYALDGMPKARDPPLPWMIEVKSPEDIAAMRASGLVAREVLDAVGRQIKVGMTTDEIDSIAHGETIKRGAYPSPLNYQGFPKSCCTSLNEVVCHGIPDVSTKLQDGDIVNVDVTVYYKGYHGDCSETFCVGNVDEAGKRLVKVTYDAWQKAIEFCKPGRPYKDIGAIIEEYVTKEGFTTVREFCGHGVGKVFHTTPNILHFKNSQPAGVMQPGHTFTIEPMICEGTNKHILWPDKWTATTADGRRSAQFEHTLLITPSGVEALTGRLPTSPKFFWE 426          
The following BLAST results are available for this feature:
BLAST of NO02G01500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30474.11.900e-18885.37methionine aminopeptidase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01500NO02G01500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01500.1NO02G01500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01500.1.cds1NO02G01500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01500.1.cds2NO02G01500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01500.1 ID=NO02G01500.1|Name=NO02G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2454bp
CTCTATTTTGCGAATCGTACTTTTTTCGGTTTGGTTTCAATCCATTGACG
GAAACATGCATCCTGTCCCTCCCTTCCGCTTGTTCACTCCACACTTTCCC
GTCAGCGACCCCATTTCGTCTCCACGCTTCTCTATTCCCCTTGGGCTCCG
CGTCTCATCATTCCCCCCAATCAAACCTGCGTGTGTCAATCCCCGGTGCA
ATACGCACGTCATCCCGTCCTTCCTCCGCCTCCCTGAAAGCCGTGAACGC
ACTCGATCGTCTACATTTATACCTGCAAGCATTTACACATATATAGCCAT
GATCGCGCCCGATAGTGGCCACGTTGCTCAAGTTGCTGCTGCTTCATTTG
CTCCGGACGCTGGCCTCGCAGATGATGGTGCAGACAGCGCTCGCCATGTC
GCAGACTGCCCACGTGCCCCTCCTCATGGTCCTGGCGTATTTTTTCTTAC
ACTGACTCGTACTCCCAGCGTGTAAGCCAAGGCTAAAAAAGAGATATGCT
TAGCAAGGACAGCACCGATGATTGCTTCATCGCGCTTCATCTGCTGCGGT
GCCTGTGGTCATGGTAGTCACCGTGTTTTTTGTCGTAGGGGCGGCCATAC
ATACACTAGACACTTCCGGTGGCTAATGGGAAGTGGCCCCCGTTTCTAGC
GCAGGGAAACAATGATTATAAGTGGGTTTGGGTGAGGGAGATATGTATAC
ATATACTCATATACAGGGATATTTAGTGGAGATTTGCCTGTGGTCAAGTC
AGATGCAAGCAAATTCAAGGTTTTGGTTATGCCCTCCCACTGGGCGGCAT
GTCGTCTTCAAGAAATTCTCGTTGGGAAAAGCGAGCATGCTCCTTCTTTA
CCCTTTCCACTCCCTTTTCCTCGATCGTAGTACGCAATGCTACCTACCCA
AGGACAAGATGCACATCTTTTCCCCTGTCTAACTCTTGCCGGTTCTGCCA
CCAACCTATAGGCGCACATGCACCGCTAGCCTCGCCCTCATCATCATCAT
CATCATCTAAGATACTTCCCCTTGCTTGCAGTGCTCGAAATGCTGTCACC
ATCATCACTCGAACGGCCCAAAGGGTTCGCCCTTATCAATCTCGTCCTGC
AGTTCCTAGTCCTTGTTGCGTTGGTGCTTGGTGAGCCCGCCGCTGCCTTC
CAGCCGTCCTCTCCCCTTTCCCCTTCTGGAACCACCTCGTCATCGCTGCA
GCAACGCGGACGGTCTCGAGGAAACGTGGTCTGCAAAAAGGGGGGCAGCA
GTAGCAGTGGGCCATCGGCGTCGAAAGGCTTTGGATTCGGGGCGAAGGCT
AAGGCTGACAAGTATAAGTACAGCGGACGTCTAAAGCCGGGTGTGCTGAG
CCCAATCCGAGAGGTGCCTGAGGAGATTATGCGGCCCGACTATGCATTGG
ACGGTGTCCCCAAAGCCCGCGACCCCCCCTTGCCCTGGATGATCGAGGTC
AAGAGCCCCGAAGACATCGCCGCCATGCGTGCCTCCGGTTTGGTTGCCCG
CGAAGTGCTTGACGCTGTGGCCCGCCAAATTAAAGTAGGAATGACCACGG
ACGAAATCGACATGATCGTGCACGGGGAGACAGTCAAAAGGGGCGCCTAC
CCTTCTCCCTTGAATTACCACGGCTTCCCCAAATCCTGCTGCACGAGTTT
GAACGAAGTGGTCTGTCACGGGATCCCCGACGTTTCCACTGTCCTTCAAG
ACGGAGACATTGTCAATGTGGACGTAACAGTATTCTACAAAGGCTACCAC
GGGGACTGCTCCGAAACCTTCTGCGTCGGTCAAGTAGACGAAGCCGGGAA
AAAATTGGTCAAAGTCACCTACGACGCGTGGCAAAAAGCAATCGACTTTT
GCAAGCCCGGGCGGCCCTACAAGGATATCGGCGCGATCATCGAAGAATAT
GTCACCAAAGAGGGGTTTACCACCGTAAGAGAATTCTGCGGACATGGATT
AGGAAAGGTCTTTCATACCACTCCGAACGTCCTCCATTTCAAGAACAGCC
AACCCGCTGGTGTGATGCAGCCCGGGCACACCTTCACCATTGAACCAATG
ATTTGTGAAGGCACGAATAAACACATTCTATGGCCTGATAAGTGGACGGC
CACGACGGCAGATGGTCGACGGTCGGCGCAGTTTGAGCATACCTTGCTCA
TTACCCCTTCGGGGGTTGAGGCGTTGACGGGACGCTTGCCGACGTCGCCC
AAATTCTTTTGGGAAGAATAGTGGGGTGAAGGGTAAGGGATGAGAGTGTC
GGTTAATAGCGTGAGGAGGTAAATGAATAGAGGAGAGGGGGGGAGACAGG
GGAGAGGAAATAGCAAAGCCCGTTGAGGCCGAGTAGAGCAAATAGAAAAT
GTTTAAATGTGAAATCTGATATGATGGCTGCTGTTGATGATGGTCAAAGA
TTTATTTATGAAGCGAAGTGTGGTTACTCGAGAATTATCCTCCTTCATTT
CTCG
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protein sequence of NO02G01500.1

>NO02G01500.1-protein ID=NO02G01500.1-protein|Name=NO02G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MLSPSSLERPKGFALINLVLQFLVLVALVLGEPAAAFQPSSPLSPSGTTS
SSLQQRGRSRGNVVCKKGGSSSSGPSASKGFGFGAKAKADKYKYSGRLKP
GVLSPIREVPEEIMRPDYALDGVPKARDPPLPWMIEVKSPEDIAAMRASG
LVAREVLDAVARQIKVGMTTDEIDMIVHGETVKRGAYPSPLNYHGFPKSC
CTSLNEVVCHGIPDVSTVLQDGDIVNVDVTVFYKGYHGDCSETFCVGQVD
EAGKKLVKVTYDAWQKAIDFCKPGRPYKDIGAIIEEYVTKEGFTTVREFC
GHGLGKVFHTTPNVLHFKNSQPAGVMQPGHTFTIEPMICEGTNKHILWPD
KWTATTADGRRSAQFEHTLLITPSGVEALTGRLPTSPKFFWEE*
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mRNA from alignment at chr2:442735..445520-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01500.1 ID=NO02G01500.1|Name=NO02G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2786bp|location=Sequence derived from alignment at chr2:442735..445520- (Nannochloropsis oceanica)
CTCTATTTTGCGAATCGTACTTTTTTCGGTTTGGTTTCAATCCATTGACG GAAACATGCATCCTGTCCCTCCCTTCCGCTTGTTCACTCCACACTTTCCC GTCAGCGACCCCATTTCGTCTCCACGCTTCTCTATTCCCCTTGGGCTCCG CGTCTCATCATTCCCCCCAATCAAACCTGCGTGTGTCAATCCCCGGTGCA ATACGCACGTCATCCCGTCCTTCCTCCGCCTCCCTGAAAGCCGTGAACGC ACTCGATCGTCTACATTTATACCTGCAAGCATTTACACATATATAGCCAT GATCGCGCCCGATAGTGGCCACGTTGCTCAAGTTGCTGCTGCTTCATTTG CTCCGGACGCTGGCCTCGCAGATGATGGTGCAGACAGCGCTCGCCATGTC GCAGACTGCCCACGTGCCCCTCCTCATGGTCCTGGCGTATTTTTTCTTAC ACTGACTCGTACTCCCAGCGTGTAAGCCAAGGCTAAAAAAGAGATATGCT TAGCAAGGACAGCACCGATGATTGCTTCATCGCGCTTCATCTGCTGCGGT GCCTGTGGTCATGGTAGTCACCGTGTTTTTTGTCGTAGGGGCGGCCATAC ATACACTAGACACTTCCGGTGGCTAATGGGAAGTGGCCCCCGTTTCTAGC GCAGGGAAACAATGATTATAAGTGGGTTTGGGTGAGGGAGATATGTATAC ATATACTCATATACAGGGATATTTAGTGGAGATTTGCCTGTGGTCAAGTC AGATGCAAGCAAATTCAAGGTTTTGGTTATGCCCTCCCACTGGGCGGCAT GTCGTCTTCAAGAAATTCTCGTTGGGAAAAGCGAGCATGCTCCTTCTTTA CCCTTTCCACTCCCTTTTCCTCGATCGTAGTACGCAATGCTACCTACCCA AGGACAAGATGCACATCTTTTCCCCTGTCTAACTCTTGCCGGTTCTGCCA CCAACCTATAGGCGCACATGCACCGCTAGCCTCGCCCTCATCATCATCAT CATCATCTAAGATACTTCCCCTTGCTTGCAGTGCTCGAAATGCTGTCACC ATCATCACTCGAACGGCCCAAAGGGTTCGCCCTTATCAATCTCGTCCTGC AGTTCCTAGTCCTTGTTGCGTTGGTGCTTGGTGAGCCCGCCGCTGCCTTC CAGCCGTCCTCTCCCCTTTCCCCTTCTGGAACCACCTCGTCATCGCTGCA GCAACGCGGACGGTCTCGAGGAAACGTGGTCTGCAAAAAGGGGGGCAGCA GTAGCAGTGGGCCATCGGCGTCGAAAGGCTTTGGATTCGGGGCGAAGGCT AAGGCTGACAAGTATAAGTACAGCGGACGTCTAAAGCCGGGTGTGCTGAG CCCAATCCGAGAGGTGCCTGAGGAGATTATGCGGCCCGACTATGCATTGG ACGGGTACGTGCCACTCGTAGATGAGTGTATTTGCATGCGTATACAGTAA GATACCTGTCTTTTTCTGCGCAAGTGTGGGCGAATTTGGGGGTGACGACG CTGAGAGTATGGATGTATGAATACGTGATTTGGCTAGTTTTCTGAATGCG GAGTGAGGAAGACTCTTTTCAGACTTTTTCACCTCTCCTGTTTGGCTCTT TTCCTTTGCACTCTCCTCCTTTCTTCATGCCTTGATTATTGGTCACCCGC TCGCAGCGTAAGCTGATGTCTCTCCACGCATTCTAACATCCTTCCTCCCT CCCTTCTCCACGCACCCCACACGCAACCAACCACAGTGTCCCCAAAGCCC GCGACCCCCCCTTGCCCTGGATGATCGAGGTCAAGAGCCCCGAAGACATC GCCGCCATGCGTGCCTCCGGTTTGGTTGCCCGCGAAGTGCTTGACGCTGT GGCCCGCCAAATTAAAGTAGGAATGACCACGGACGAAATCGACATGATCG TGCACGGGGAGACAGTCAAAAGGGGCGCCTACCCTTCTCCCTTGAATTAC CACGGCTTCCCCAAATCCTGCTGCACGAGTTTGAACGAAGTGGTCTGTCA CGGGATCCCCGACGTTTCCACTGTCCTTCAAGACGGAGACATTGTCAATG TGGACGTAACAGTATTCTACAAAGGCTACCACGGGGACTGCTCCGAAACC TTCTGCGTCGGTCAAGTAGACGAAGCCGGGAAAAAATTGGTCAAAGTCAC CTACGACGCGTGGCAAAAAGCAATCGACTTTTGCAAGCCCGGGCGGCCCT ACAAGGATATCGGCGCGATCATCGAAGAATATGTCACCAAAGAGGGGTTT ACCACCGTAAGAGAATTCTGCGGACATGGATTAGGAAAGGTCTTTCATAC CACTCCGAACGTCCTCCATTTCAAGAACAGCCAACCCGCTGGTGTGATGC AGCCCGGGCACACCTTCACCATTGAACCAATGATTTGTGAAGGCACGAAT AAACACATTCTATGGCCTGATAAGTGGACGGCCACGACGGCAGATGGTCG ACGGTCGGCGCAGTTTGAGCATACCTTGCTCATTACCCCTTCGGGGGTTG AGGCGTTGACGGGACGCTTGCCGACGTCGCCCAAATTCTTTTGGGAAGAA TAGTGGGGTGAAGGGTAAGGGATGAGAGTGTCGGTTAATAGCGTGAGGAG GTAAATGAATAGAGGAGAGGGGGGGAGACAGGGGAGAGGAAATAGCAAAG CCCGTTGAGGCCGAGTAGAGCAAATAGAAAATGTTTAAATGTGAAATCTG ATATGATGGCTGCTGTTGATGATGGTCAAAGATTTATTTATGAAGCGAAG TGTGGTTACTCGAGAATTATCCTCCTTCATTTCTCG
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Coding sequence (CDS) from alignment at chr2:442735..445520-

>NO02G01500.1 ID=NO02G01500.1|Name=NO02G01500.1|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at chr2:442735..445520- (Nannochloropsis oceanica)
ATGCTGTCACCATCATCACTCGAACGGCCCAAAGGGTTCGCCCTTATCAA
TCTCGTCCTGCAGTTCCTAGTCCTTGTTGCGTTGGTGCTTGGTGAGCCCG
CCGCTGCCTTCCAGCCGTCCTCTCCCCTTTCCCCTTCTGGAACCACCTCG
TCATCGCTGCAGCAACGCGGACGGTCTCGAGGAAACGTGGTCTGCAAAAA
GGGGGGCAGCAGTAGCAGTGGGCCATCGGCGTCGAAAGGCTTTGGATTCG
GGGCGAAGGCTAAGGCTGACAAGTATAAGTACAGCGGACGTCTAAAGCCG
GGTGTGCTGAGCCCAATCCGAGAGGTGCCTGAGGAGATTATGCGGCCCGA
CTATGCATTGGACGGTGTCCCCAAAGCCCGCGACCCCCCCTTGCCCTGGA
TGATCGAGGTCAAGAGCCCCGAAGACATCGCCGCCATGCGTGCCTCCGGT
TTGGTTGCCCGCGAAGTGCTTGACGCTGTGGCCCGCCAAATTAAAGTAGG
AATGACCACGGACGAAATCGACATGATCGTGCACGGGGAGACAGTCAAAA
GGGGCGCCTACCCTTCTCCCTTGAATTACCACGGCTTCCCCAAATCCTGC
TGCACGAGTTTGAACGAAGTGGTCTGTCACGGGATCCCCGACGTTTCCAC
TGTCCTTCAAGACGGAGACATTGTCAATGTGGACGTAACAGTATTCTACA
AAGGCTACCACGGGGACTGCTCCGAAACCTTCTGCGTCGGTCAAGTAGAC
GAAGCCGGGAAAAAATTGGTCAAAGTCACCTACGACGCGTGGCAAAAAGC
AATCGACTTTTGCAAGCCCGGGCGGCCCTACAAGGATATCGGCGCGATCA
TCGAAGAATATGTCACCAAAGAGGGGTTTACCACCGTAAGAGAATTCTGC
GGACATGGATTAGGAAAGGTCTTTCATACCACTCCGAACGTCCTCCATTT
CAAGAACAGCCAACCCGCTGGTGTGATGCAGCCCGGGCACACCTTCACCA
TTGAACCAATGATTTGTGAAGGCACGAATAAACACATTCTATGGCCTGAT
AAGTGGACGGCCACGACGGCAGATGGTCGACGGTCGGCGCAGTTTGAGCA
TACCTTGCTCATTACCCCTTCGGGGGTTGAGGCGTTGACGGGACGCTTGC
CGACGTCGCCCAAATTCTTTTGGGAAGAATAG
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Synonyms
Publications