NO02G01490.1, NO02G01490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01490.1
Unique NameNO02G01490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length974
Alignment locationchr2:441234..442340 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:441234..442340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01490.1 vs.
Match: EWM30475.1 (FAM92 protein [Nannochloropsis gaditana])

HSP 1 Score: 376.7 bits (966), Expect = 5.600e-101
Identity = 193/245 (78.78%), Postives = 218/245 (88.98%), Query Frame = 0 
Query:    1 MDEKGRALQGRLDFCERNVKTLQLGVKALLKNHKEGCNATLDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRMIMCERAEERVLSTIEYVQAHILLPTKLLLRDRERALARSRAMERKLTYSGERTLLGMLNLEDDDDLKRQKLANYGECAKHTDEVVDSNFRCFEKSRVIEMKAMLEETLRAEMLYHCRALEILEPLCVSMRQLDPNRAMVSMAQELDELNSDKAEEEERAERGNERG 246
            MDEKGR LQGRLDFCERNV TL+ GV+ALL+NH EGCN T+DLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERR IMCERAEERV+ST + + + +L PT+LLL+DRERAL + RAMERK+T+SGE+TLL MLNLEDD D K+QKLANY ECAKHTDEVVDSNFRCFEKSRV+EMKAMLEETLRAEMLYHCRALEILEPLCVSMR+LDP+ AM SM QELDELN+ + E   +++R + RG
Sbjct:    1 MDEKGRVLQGRLDFCERNVTTLRQGVRALLRNHDEGCNVTMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALRKFRAMERKITFSGEQTLLSMLNLEDDADTKQQKLANYSECAKHTDEVVDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQELDELNTAEDENNGQSKRAHMRG 245
The following BLAST results are available for this feature:
BLAST of NO02G01490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30475.15.600e-10178.78FAM92 protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01490NO02G01490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01490.1NO02G01490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01490.1.cds1NO02G01490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01490.1.cds2NO02G01490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01490.1 ID=NO02G01490.1|Name=NO02G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=974bp
TGAAAATTGGCGAGCAGTAGCTATAGCATATATTTCGCCTCTCTTTTGGA
TTTGGCCTGCAGTCCATATACCCCCATTGCGCTCATATAAGTCGCAGCAA
CATTTTTTTCATGTCAACATTAAAGATTTGTCATGCTCTTACTCCAAATT
CGAGCAGCATATGGACGAAAAGGGGCGGGCGCTGCAAGGCCGCCTCGATT
TTTGCGAGCGAAATGTCAAGACGCTGCAGCTTGGAGTCAAGGCATTGCTG
AAAAACCACAAGGAAGGATGCAATGCCACGCTCGACCTTTCGCAAAAGGT
TCGGGACACGGCTGCGCAGGAGCAGTTCATCGACCTCCAAGAAGATCTCA
TTGCCATTGCCGAGTGCACCAAGCGCTTGGCGGAGGAGCGAAGGATGATT
ATGTGCGAGCGTGCAGAAGAGCGGGTGCTTTCTACTATCGAGTACGTGCA
GGCGCATATATTGCTTCCAACAAAGCTCTTACTTAGAGACCGGGAGCGAG
CTCTTGCCAGATCTCGGGCCATGGAGAGGAAACTCACATACTCTGGAGAA
CGAACCTTGCTAGGTATGCTCAACCTCGAGGACGACGATGACCTGAAGCG
GCAAAAGCTAGCCAATTACGGGGAATGCGCCAAGCACACGGATGAGGTGG
TGGACAGTAATTTTCGTTGTTTCGAGAAGAGTAGGGTGATAGAAATGAAG
GCTATGCTTGAGGAGACATTACGGGCAGAGATGCTTTACCACTGCCGGGC
TTTGGAGATACTGGAGCCTTTATGCGTTTCCATGCGTCAGCTGGACCCGA
ATCGTGCAATGGTCAGCATGGCGCAGGAGCTAGATGAGCTGAACAGTGAC
AAGGCGGAAGAAGAGGAAAGGGCTGAGCGGGGAAATGAAAGAGGTTTGCG
GGGTGATGCTCGACGGTGATCAGGGTAAGCAGTAATAAGGAAAAGGGAAG
GCACGGCATAATCTTTAATTTAAA
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protein sequence of NO02G01490.1

>NO02G01490.1-protein ID=NO02G01490.1-protein|Name=NO02G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MDEKGRALQGRLDFCERNVKTLQLGVKALLKNHKEGCNATLDLSQKVRDT
AAQEQFIDLQEDLIAIAECTKRLAEERRMIMCERAEERVLSTIEYVQAHI
LLPTKLLLRDRERALARSRAMERKLTYSGERTLLGMLNLEDDDDLKRQKL
ANYGECAKHTDEVVDSNFRCFEKSRVIEMKAMLEETLRAEMLYHCRALEI
LEPLCVSMRQLDPNRAMVSMAQELDELNSDKAEEEERAERGNERGLRGDA
RR*
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mRNA from alignment at chr2:441234..442340-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01490.1 ID=NO02G01490.1|Name=NO02G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1107bp|location=Sequence derived from alignment at chr2:441234..442340- (Nannochloropsis oceanica)
TGAAAATTGGCGAGCAGTAGCTATAGCATATATTTCGCCTCTCTTTTGGA
TTTGGCCTGCAGTCCATATACCCCCATTGCGCTCATATAAGTCGCAGCAA
CATTTTTTTCATGTCAACATTAAAGATTTGTCATGCTCTTACTCCAAATT
CGAGCAGCATATGGACGAAAAGGGGCGGGCGCTGCAAGGCCGCCTCGATT
TTTGCGAGCGAAATGTCAAGACGCTGCAGCTTGGAGTCAAGGCATTGCTG
AAAAACCACAAGGAAGGATGCAATGCCACGCTCGACCTTTCGCAAAAGGT
TCGGGACACGGCTGCGCAGGAGCAGTTCATCGACCTCCAAGAAGATCTCA
TTGCCATTGCCGAGTGCACCAAGCGCTTGGCGGAGGAGCGAAGGATGATT
ATGTGCGAGCGTGCAGAAGAGCGGGTGCTTTCTACTATCGAGTACGTGCA
GGCGCATATATTGCTTCCAACAAAGCTCTTACTTAGAGACCGGGAGCGAG
CTCTTGCCAGATCTCGGGCCATGGAGAGGAAACTCACATGTGAGTGCTTG
GGGAGGGAAGAAGGGAGGACATGATGGGACCACGCAACACTAACAAGCAG
ACCGGTCGGGCGCATTGCTTCCATGGAATATGTTTTTTCATTCATCATTT
CTCATCTTTGTTCAACAATTAGACTCTGGAGAACGAACCTTGCTAGGTAT
GCTCAACCTCGAGGACGACGATGACCTGAAGCGGCAAAAGCTAGCCAATT
ACGGGGAATGCGCCAAGCACACGGATGAGGTGGTGGACAGTAATTTTCGT
TGTTTCGAGAAGAGTAGGGTGATAGAAATGAAGGCTATGCTTGAGGAGAC
ATTACGGGCAGAGATGCTTTACCACTGCCGGGCTTTGGAGATACTGGAGC
CTTTATGCGTTTCCATGCGTCAGCTGGACCCGAATCGTGCAATGGTCAGC
ATGGCGCAGGAGCTAGATGAGCTGAACAGTGACAAGGCGGAAGAAGAGGA
AAGGGCTGAGCGGGGAAATGAAAGAGGTTTGCGGGGTGATGCTCGACGGT
GATCAGGGTAAGCAGTAATAAGGAAAAGGGAAGGCACGGCATAATCTTTA
ATTTAAA
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Coding sequence (CDS) from alignment at chr2:441234..442340-

>NO02G01490.1 ID=NO02G01490.1|Name=NO02G01490.1|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at chr2:441234..442340- (Nannochloropsis oceanica)
ATGGACGAAAAGGGGCGGGCGCTGCAAGGCCGCCTCGATTTTTGCGAGCG
AAATGTCAAGACGCTGCAGCTTGGAGTCAAGGCATTGCTGAAAAACCACA
AGGAAGGATGCAATGCCACGCTCGACCTTTCGCAAAAGGTTCGGGACACG
GCTGCGCAGGAGCAGTTCATCGACCTCCAAGAAGATCTCATTGCCATTGC
CGAGTGCACCAAGCGCTTGGCGGAGGAGCGAAGGATGATTATGTGCGAGC
GTGCAGAAGAGCGGGTGCTTTCTACTATCGAGTACGTGCAGGCGCATATA
TTGCTTCCAACAAAGCTCTTACTTAGAGACCGGGAGCGAGCTCTTGCCAG
ATCTCGGGCCATGGAGAGGAAACTCACATACTCTGGAGAACGAACCTTGC
TAGGTATGCTCAACCTCGAGGACGACGATGACCTGAAGCGGCAAAAGCTA
GCCAATTACGGGGAATGCGCCAAGCACACGGATGAGGTGGTGGACAGTAA
TTTTCGTTGTTTCGAGAAGAGTAGGGTGATAGAAATGAAGGCTATGCTTG
AGGAGACATTACGGGCAGAGATGCTTTACCACTGCCGGGCTTTGGAGATA
CTGGAGCCTTTATGCGTTTCCATGCGTCAGCTGGACCCGAATCGTGCAAT
GGTCAGCATGGCGCAGGAGCTAGATGAGCTGAACAGTGACAAGGCGGAAG
AAGAGGAAAGGGCTGAGCGGGGAAATGAAAGAGGTTTGCGGGGTGATGCT
CGACGGTGA
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Synonyms
Publications