NO02G01470.1, NO02G01470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01470.1
Unique NameNO02G01470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1167
Alignment locationchr2:438754..440115 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:438754..440115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01470.1 vs.
Match: EWM30536.1 (serine arginine-rich splicing factor 4 [Nannochloropsis gaditana])

HSP 1 Score: 280.0 bits (715), Expect = 1.100e-71
Identity = 150/247 (60.73%), Postives = 176/247 (71.26%), Query Frame = 0 
Query:    1 MPGTRLFVGNLTSAATAEDLRDLFKEFGPIDRIDMKKEGGFGFVEFIRGRDGEEALVKAAQSVNGKELHGVTLTVEEAKGPKREGPRPQMQRSEHRVRVEGMPRGSTWQDLKDFARGSTGLAPLYTEVVRGNPSVGIIEYHRREDMIEALRQINNTELRGVMVQVYEDAPSGRGRGDERRRSYS--------------PPRREPSRGGDIRGGYYDEFRPP-----LRGPGLEKGTPRITYLPPPTP 229
            MPGTRL+VGNLT + T ++LR++F  +GPIDR+DMKK+G + FVEF+RGR+GE+A+V AAQ +N KELHG+ LTVEEAKGPKREGPRP+MQRS+ R+RVEGMPR +TWQDLKDFARG  GLAPLYTEV+RG P VGIIEYHRREDMIEAL  I+NTELRGV+VQVYED P  R RG ERR  +S              PPR  P      R  Y   + PP      RG    +  P   Y PPP P
Sbjct:    1 MPGTRLYVGNLTPSVTGDELREIFSGYGPIDRVDMKKDG-YAFVEFVRGREGEDAVVAAAQGMNKKELHGLILTVEEAKGPKREGPRPEMQRSDFRIRVEGMPREATWQDLKDFARGKKGLAPLYTEVLRGTPGVGIIEYHRREDMIEALSLIHNTELRGVVVQVYEDTPMSRDRGPERRPGFSRSPPGDYRRGDNRFPPRDRPRSRS--RERYPPSYMPPDPYAYRRGRSRSRSPPPGRY-PPPYP 243
The following BLAST results are available for this feature:
BLAST of NO02G01470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30536.11.100e-7160.73serine arginine-rich splicing factor 4 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01470NO02G01470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01470.1NO02G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01470.1.cds1NO02G01470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01470.1.cds2NO02G01470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01470.1.cds3NO02G01470.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01470.1 ID=NO02G01470.1|Name=NO02G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp
ATGCCGGGCACGCGTCTATTCGTGGGCAATCTTACGTCCGCCGCCACGGC
GGAGGATCTGCGGGACCTGTTTAAGGAATTCGGCCCCATTGACCGCATTG
ATATGAAGAAGGAAGGCGGATTTGGCTTTGTCGAGTTCATCCGTGGGCGT
GACGGAGAAGAGGCTCTAGTGAAGGCCGCCCAGAGCGTGAACGGCAAGGA
GCTGCATGGCGTAACCTTGACGGTAGAGGAGGCGAAAGGACCGAAGCGCG
AAGGTCCCCGCCCACAGATGCAGCGAAGTGAGCACCGGGTCCGCGTGGAG
GGCATGCCACGTGGGAGCACGTGGCAAGACCTAAAGGACTTCGCGCGGGG
GAGCACGGGCTTAGCTCCTTTGTACACGGAAGTGGTGCGAGGCAACCCTA
GCGTGGGCATCATTGAGTACCATCGACGGGAGGATATGATTGAAGCCCTG
CGGCAAATCAACAACACTGAACTAAGGGGCGTGATGGTGCAGGTGTACGA
GGATGCCCCCTCTGGCCGTGGCCGTGGTGACGAGCGACGCCGAAGCTACA
GCCCTCCCCGACGAGAACCATCCCGCGGAGGAGATATCCGCGGAGGGTAC
TACGACGAATTTCGTCCTCCACTACGCGGTCCAGGTCTCGAGAAAGGTAC
CCCGCGCATCACATACCTCCCGCCGCCTACGCCTTTGGTCGAGGTCGCTC
ACGGTCCCGCAGCCCCGTCCGCAGTCATTATCCCCCCCCTCTTTCTGCGC
CTCCTGTTGCTGTTAACCATGACGATCTATATCGACGTGGTGGCGGCCGT
GACGGACCTCTCTCCCTCCTCCCTCCCCCTCCTGCCTATCATGATGACTA
CGAGTACCGGCGAGGCGGCCGAGGAGAAAGAGGAGGAAGAGGAGGAGGGC
GTTCTCGTTCTCCGCCATCTTCCCGCTATGGAGATCTTCCTCCCCCTCAC
TATTCTACTTCGTCTTCGTATCCGTCCCAGCAATATGCACACGCGCCGCC
GTCGGTTTATCCTGAGTACAGCTCCCACAGGCAGCGAGGAGGGCCAGGGG
AGGATTACAGCTATCATGCCCCTTCCCCTCACTCGCGCTACCTTGCTGCT
GGTGACCAGTACATTAATCGACGGAGCGATGCAAGTAGCGGTGCTCTTGG
TGATACAGGCGGTGTAA
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protein sequence of NO02G01470.1

>NO02G01470.1-protein ID=NO02G01470.1-protein|Name=NO02G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MPGTRLFVGNLTSAATAEDLRDLFKEFGPIDRIDMKKEGGFGFVEFIRGR
DGEEALVKAAQSVNGKELHGVTLTVEEAKGPKREGPRPQMQRSEHRVRVE
GMPRGSTWQDLKDFARGSTGLAPLYTEVVRGNPSVGIIEYHRREDMIEAL
RQINNTELRGVMVQVYEDAPSGRGRGDERRRSYSPPRREPSRGGDIRGGY
YDEFRPPLRGPGLEKGTPRITYLPPPTPLVEVAHGPAAPSAVIIPPLFLR
LLLLLTMTIYIDVVAAVTDLSPSSLPLLPIMMTTSTGEAAEEKEEEEEEG
VLVLRHLPAMEIFLPLTILLRLRIRPSNMHTRRRRFILSTAPTGSEEGQG
RITAIMPLPLTRATLLLVTSTLIDGAMQVAVLLVIQAV*
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mRNA from alignment at chr2:438754..440115+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01470.1 ID=NO02G01470.1|Name=NO02G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp|location=Sequence derived from alignment at chr2:438754..440115+ (Nannochloropsis oceanica)
ATGCCGGGCACGCGTCTATTCGTGGGCAATCTTACGTCCGCCGCCACGGC
GGAGGATCTGCGGGACCTGTTTAAGGAATTCGGCCCCATTGACCGCATTG
ATATGAAGAAGGAAGGCGGATTTGGCTTTGTCGAGTTCATCCGTGGGCGT
GACGGAGAAGAGGCTCTAGTGAAGGCCGCCCAGAGCGTGAACGGCAAGGA
GCTGCATGGCGTAACCTTGACGGTAGAGGAGGCGAAAGGACCGAAGCGCG
AAGGTCCCCGCCCACAGATGCAGCGAAGTGAGCACCGGGTCCGCGTGGAG
GGCATGCCACGTGGGAGCACGTGGCAAGACCTAAAGGACTTCGCGCGGGG
GAGCACGGGCTTAGCTCCTTTGTACACGGAAGTGGTGCGAGGCAACCCTA
GCGTGGGCATCATTGAGTACCATCGACGGGAGGATATGATTGAAGCCCTG
CGGCAAATCAACAACACTGAACTAAGGGGCGTGATGGTGCAGGTGTACGA
GGTGAGATTGAGAGGGGTAAGGAGGTTGAGGCTCAACCACATGGCTTTAT
GGGAAACAAAGCAAGAATCACCGCGATGAAGAGATGAAATACGACACACA
CTCTATCCGTACTAATTCAATTCCATCCTCTTATATGAAATACTCTTTAG
GATGCCCCCTCTGGCCGTGGCCGTGGTGACGAGCGACGCCGAAGCTACAG
CCCTCCCCGACGAGAACCATCCCGCGGAGGAGATATCCGCGGAGGGTACT
ACGACGAATTTCGTCCTCCACTACGCGGTCCAGGTCCACGTGATTACCAC
CGTGATCGCGATCGTCTTCCCCGCTCCAGGTCTCGAGAAAGGTACCCCGC
GCATCACATACCTCCCGCCGCCTACGCCTTTGGTCGAGGTCGCTCACGGT
CCCGCAGCCCCGTCCGCAGTCATTATCCCCCCCCTCTTTCTGCGCCTCCT
GTTGCTGTTAACCATGACGATCTATATCGACGTGGTGGCGGCCGTGACGG
ACCTCTCTCCCTCCTCCCTCCCCCTCCTGCCTATCATGATGACTACGAGT
ACCGGCGAGGCGGCCGAGGAGAAAGAGGAGGAAGAGGAGGAGGGCGTTCT
CGTTCTCCGCCATCTTCCCGCTATGGAGATCTTCCTCCCCCTCACTATTC
TACTTCGTCTTCGTATCCGTCCCAGCAATATGCACACGCGCCGCCGTCGG
TTTATCCTGAGTACAGCTCCCACAGGCAGCGAGGAGGGCCAGGGGAGGAT
TACAGCTATCATGCCCCTTCCCCTCACTCGCGCTACCTTGCTGCTGGTGA
CCAGTACATTAATCGACGGAGCGATGCAAGTAGCGGTGCTCTTGGTGATA
CAGGCGGTGTAA
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Coding sequence (CDS) from alignment at chr2:438754..440115+

>NO02G01470.1 ID=NO02G01470.1|Name=NO02G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=1167bp|location=Sequence derived from alignment at chr2:438754..440115+ (Nannochloropsis oceanica)
ATGCCGGGCACGCGTCTATTCGTGGGCAATCTTACGTCCGCCGCCACGGC
GGAGGATCTGCGGGACCTGTTTAAGGAATTCGGCCCCATTGACCGCATTG
ATATGAAGAAGGAAGGCGGATTTGGCTTTGTCGAGTTCATCCGTGGGCGT
GACGGAGAAGAGGCTCTAGTGAAGGCCGCCCAGAGCGTGAACGGCAAGGA
GCTGCATGGCGTAACCTTGACGGTAGAGGAGGCGAAAGGACCGAAGCGCG
AAGGTCCCCGCCCACAGATGCAGCGAAGTGAGCACCGGGTCCGCGTGGAG
GGCATGCCACGTGGGAGCACGTGGCAAGACCTAAAGGACTTCGCGCGGGG
GAGCACGGGCTTAGCTCCTTTGTACACGGAAGTGGTGCGAGGCAACCCTA
GCGTGGGCATCATTGAGTACCATCGACGGGAGGATATGATTGAAGCCCTG
CGGCAAATCAACAACACTGAACTAAGGGGCGTGATGGTGCAGGTGTACGA
GGATGCCCCCTCTGGCCGTGGCCGTGGTGACGAGCGACGCCGAAGCTACA
GCCCTCCCCGACGAGAACCATCCCGCGGAGGAGATATCCGCGGAGGGTAC
TACGACGAATTTCGTCCTCCACTACGCGGTCCAGGTCTCGAGAAAGGTAC
CCCGCGCATCACATACCTCCCGCCGCCTACGCCTTTGGTCGAGGTCGCTC
ACGGTCCCGCAGCCCCGTCCGCAGTCATTATCCCCCCCCTCTTTCTGCGC
CTCCTGTTGCTGTTAACCATGACGATCTATATCGACGTGGTGGCGGCCGT
GACGGACCTCTCTCCCTCCTCCCTCCCCCTCCTGCCTATCATGATGACTA
CGAGTACCGGCGAGGCGGCCGAGGAGAAAGAGGAGGAAGAGGAGGAGGGC
GTTCTCGTTCTCCGCCATCTTCCCGCTATGGAGATCTTCCTCCCCCTCAC
TATTCTACTTCGTCTTCGTATCCGTCCCAGCAATATGCACACGCGCCGCC
GTCGGTTTATCCTGAGTACAGCTCCCACAGGCAGCGAGGAGGGCCAGGGG
AGGATTACAGCTATCATGCCCCTTCCCCTCACTCGCGCTACCTTGCTGCT
GGTGACCAGTACATTAATCGACGGAGCGATGCAAGTAGCGGTGCTCTTGG
TGATACAGGCGGTGTAA
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Synonyms
Publications