NO02G01450.1, NO02G01450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01450.1
Unique NameNO02G01450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1368
Alignment locationchr2:433586..434953 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:433586..434953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G01450.1 vs.
Match: XP_005855486.1 (tubulin tyrosine ligase [Nannochloropsis gaditana CCMP526]; XP_005855856.1 tubulin tyrosine ligase [Nannochloropsis gaditana CCMP526]; EKU20505.1 tubulin tyrosine ligase [Nannochloropsis gaditana CCMP526]; EKU20873.1 tubulin tyrosine ligase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 645.2 bits (1663), Expect = 1.500e-181
Identity = 321/454 (70.70%), Postives = 372/454 (81.94%), Query Frame = 0
Query:    3 WNTSQMDSTQFEINTTPYFSSIDPVCTKPEPLDANVARVWVKVPCDYTRRLLIHAIARRQPRLALVKREEDASILWADYEDLNFDRVLAGHGEIKANSYLIRKGLGRKAQLAYQLRKYMAKRPESALHGAIPETLVIETWEAFEEEMSFGALGATFDQNLTANLSQRDRLEWCLRDTKERLAQTQGQIWILKPSVTNKGAEVTVLRDYVTIADVVGEWPDVREWVLQAYVTRPLLHRRKKFHLRCYVLAVGDLSVYVWRQVLLLSSAMEYNEQDLRNQLVHITNTARQVEDGESHLVVEEECVFLLDDLVADLKESRGLKWGEAESVVEDIRKGMEEVTAELFKALHLERTVFAPIPQCFELLGLDFLVSLDEDNEKDE-TPKPLPQVHLLEVNPGPDFKQTGPRLRSVIEGLLEATLDVAVLDDHVEGTEDLVLVYQSLHRQNGESGMRLLEG 456
            W TS +++T+FEI  TPYFSSI PV T     D    R+WVK+ CDYTRR+L+ AIA+RQ RL  VK ++DASILWADYEDL+FDRVLA  G+IKANSYL+RKGL RKAQLAY LRKYMAKRP S LHGAIPETLVIETWEAFEE MSFGALGATFD NLTA LS RDRL+WCLRD +ER+A++ G  WILKPSVTNKGAE+TV +DY ++ D+V  WPDVREWVLQAY+  PLL+RR+KFHLRCYVLAVG+LSVYVWRQ+LLL+S +EY+ +DL NQL H+TNTARQVEDGE      E+CVF LDDLV DL+  + L   +A  +V DIR G+E VT ELFKALH ERTVFAP+PQCFELLGLDFLVS+D+ +  +   P   PQVHLLEVNPGPDFKQTGPRL+SVIEGLLEATLDVAVL+D  E ++DL LVYQSLH +NGE GMRLL+G
Sbjct:    5 WKTSAIENTRFEIKYTPYFSSIGPVSTACPTYDPRATRIWVKIECDYTRRILVKAIAKRQSRLCGVKNQKDASILWADYEDLDFDRVLASGGKIKANSYLVRKGLARKAQLAYYLRKYMAKRPRSILHGAIPETLVIETWEAFEEGMSFGALGATFDGNLTATLSLRDRLDWCLRDARERIARSPGSTWILKPSVTNKGAEITVFKDYQSMRDIVRTWPDVREWVLQAYIVTPLLYRRRKFHLRCYVLAVGNLSVYVWRQILLLTSTVEYDSEDLCNQLAHVTNTARQVEDGEM-CPAAEDCVFSLDDLVDDLRTKQHLSLEQAGGIVSDIRGGIENVTGELFKALHGERTVFAPVPQCFELLGLDFLVSMDQTSSNESGLPLLTPQVHLLEVNPGPDFKQTGPRLKSVIEGLLEATLDVAVLEDE-EISKDLALVYQSLHPENGEVGMRLLDG 456          
The following BLAST results are available for this feature:
BLAST of NO02G01450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855486.11.500e-18170.70tubulin tyrosine ligase [Nannochloropsis gaditana ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01450NO02G01450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01450.1NO02G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01450.1.cds1NO02G01450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01450.1 ID=NO02G01450.1|Name=NO02G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1368bp
ATGGTCTGGAATACTTCCCAAATGGACTCCACACAGTTTGAGATCAATAC
GACACCATACTTTTCATCCATAGATCCCGTTTGTACGAAGCCTGAGCCTC
TCGACGCCAACGTCGCTCGGGTTTGGGTGAAGGTGCCCTGCGATTATACA
CGACGACTCCTCATCCACGCCATTGCCCGTCGACAGCCCCGCTTGGCGCT
AGTCAAACGAGAGGAGGATGCTTCGATCTTATGGGCGGACTACGAGGACC
TAAATTTCGACCGTGTCTTGGCTGGCCATGGCGAGATCAAGGCCAACTCC
TACCTGATTAGGAAAGGCCTTGGTCGCAAGGCTCAGCTGGCTTACCAGTT
GCGGAAGTACATGGCTAAAAGACCAGAATCAGCGCTGCACGGAGCCATAC
CTGAGACATTGGTGATTGAAACCTGGGAAGCCTTTGAGGAGGAAATGAGC
TTTGGGGCCTTGGGTGCGACGTTCGATCAAAATCTCACGGCCAACCTTTC
ACAGCGGGACCGCCTGGAATGGTGCCTCCGGGATACCAAAGAGCGGCTCG
CCCAAACGCAGGGACAGATCTGGATCCTTAAGCCTAGTGTCACCAACAAA
GGCGCGGAAGTCACGGTGCTGCGGGATTATGTGACAATAGCAGACGTGGT
GGGGGAATGGCCGGACGTCCGAGAGTGGGTGTTGCAAGCATATGTCACTC
GACCGCTGCTTCACCGCCGAAAGAAGTTTCATTTGCGTTGCTATGTCCTG
GCTGTGGGAGATTTGTCTGTGTACGTCTGGCGGCAGGTGTTGCTGTTGAG
CTCGGCAATGGAGTACAATGAGCAGGACTTGCGAAATCAACTTGTGCACA
TTACAAACACCGCTCGGCAAGTGGAAGACGGAGAATCGCACCTCGTGGTG
GAGGAGGAGTGCGTCTTTTTGTTGGATGACTTGGTGGCAGATTTGAAAGA
AAGTCGGGGGCTTAAGTGGGGAGAAGCAGAGAGTGTGGTGGAGGATATTC
GAAAAGGGATGGAGGAGGTGACAGCAGAGCTGTTCAAAGCCTTACATCTA
GAACGCACAGTCTTTGCCCCTATCCCGCAGTGCTTCGAGCTGCTGGGGCT
GGATTTCCTTGTATCTCTCGACGAGGACAATGAGAAAGATGAAACGCCTA
AGCCACTCCCGCAAGTTCACCTGCTGGAAGTAAATCCGGGACCGGACTTC
AAACAAACGGGGCCGCGGCTTCGTTCGGTGATAGAGGGGCTGTTGGAAGC
CACGCTTGATGTGGCGGTGCTAGATGATCATGTGGAGGGCACGGAGGACT
TGGTATTGGTGTACCAGTCGTTACACAGGCAAAATGGTGAATCCGGGATG
CGGTTATTGGAAGGATGA
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protein sequence of NO02G01450.1

>NO02G01450.1-protein ID=NO02G01450.1-protein|Name=NO02G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MVWNTSQMDSTQFEINTTPYFSSIDPVCTKPEPLDANVARVWVKVPCDYT
RRLLIHAIARRQPRLALVKREEDASILWADYEDLNFDRVLAGHGEIKANS
YLIRKGLGRKAQLAYQLRKYMAKRPESALHGAIPETLVIETWEAFEEEMS
FGALGATFDQNLTANLSQRDRLEWCLRDTKERLAQTQGQIWILKPSVTNK
GAEVTVLRDYVTIADVVGEWPDVREWVLQAYVTRPLLHRRKKFHLRCYVL
AVGDLSVYVWRQVLLLSSAMEYNEQDLRNQLVHITNTARQVEDGESHLVV
EEECVFLLDDLVADLKESRGLKWGEAESVVEDIRKGMEEVTAELFKALHL
ERTVFAPIPQCFELLGLDFLVSLDEDNEKDETPKPLPQVHLLEVNPGPDF
KQTGPRLRSVIEGLLEATLDVAVLDDHVEGTEDLVLVYQSLHRQNGESGM
RLLEG*
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mRNA from alignment at chr2:433586..434953-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01450.1 ID=NO02G01450.1|Name=NO02G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1368bp|location=Sequence derived from alignment at chr2:433586..434953- (Nannochloropsis oceanica)
ATGGTCTGGAATACTTCCCAAATGGACTCCACACAGTTTGAGATCAATAC GACACCATACTTTTCATCCATAGATCCCGTTTGTACGAAGCCTGAGCCTC TCGACGCCAACGTCGCTCGGGTTTGGGTGAAGGTGCCCTGCGATTATACA CGACGACTCCTCATCCACGCCATTGCCCGTCGACAGCCCCGCTTGGCGCT AGTCAAACGAGAGGAGGATGCTTCGATCTTATGGGCGGACTACGAGGACC TAAATTTCGACCGTGTCTTGGCTGGCCATGGCGAGATCAAGGCCAACTCC TACCTGATTAGGAAAGGCCTTGGTCGCAAGGCTCAGCTGGCTTACCAGTT GCGGAAGTACATGGCTAAAAGACCAGAATCAGCGCTGCACGGAGCCATAC CTGAGACATTGGTGATTGAAACCTGGGAAGCCTTTGAGGAGGAAATGAGC TTTGGGGCCTTGGGTGCGACGTTCGATCAAAATCTCACGGCCAACCTTTC ACAGCGGGACCGCCTGGAATGGTGCCTCCGGGATACCAAAGAGCGGCTCG CCCAAACGCAGGGACAGATCTGGATCCTTAAGCCTAGTGTCACCAACAAA GGCGCGGAAGTCACGGTGCTGCGGGATTATGTGACAATAGCAGACGTGGT GGGGGAATGGCCGGACGTCCGAGAGTGGGTGTTGCAAGCATATGTCACTC GACCGCTGCTTCACCGCCGAAAGAAGTTTCATTTGCGTTGCTATGTCCTG GCTGTGGGAGATTTGTCTGTGTACGTCTGGCGGCAGGTGTTGCTGTTGAG CTCGGCAATGGAGTACAATGAGCAGGACTTGCGAAATCAACTTGTGCACA TTACAAACACCGCTCGGCAAGTGGAAGACGGAGAATCGCACCTCGTGGTG GAGGAGGAGTGCGTCTTTTTGTTGGATGACTTGGTGGCAGATTTGAAAGA AAGTCGGGGGCTTAAGTGGGGAGAAGCAGAGAGTGTGGTGGAGGATATTC GAAAAGGGATGGAGGAGGTGACAGCAGAGCTGTTCAAAGCCTTACATCTA GAACGCACAGTCTTTGCCCCTATCCCGCAGTGCTTCGAGCTGCTGGGGCT GGATTTCCTTGTATCTCTCGACGAGGACAATGAGAAAGATGAAACGCCTA AGCCACTCCCGCAAGTTCACCTGCTGGAAGTAAATCCGGGACCGGACTTC AAACAAACGGGGCCGCGGCTTCGTTCGGTGATAGAGGGGCTGTTGGAAGC CACGCTTGATGTGGCGGTGCTAGATGATCATGTGGAGGGCACGGAGGACT TGGTATTGGTGTACCAGTCGTTACACAGGCAAAATGGTGAATCCGGGATG CGGTTATTGGAAGGATGA
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Coding sequence (CDS) from alignment at chr2:433586..434953-

>NO02G01450.1 ID=NO02G01450.1|Name=NO02G01450.1|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at chr2:433586..434953- (Nannochloropsis oceanica)
ATGGTCTGGAATACTTCCCAAATGGACTCCACACAGTTTGAGATCAATAC
GACACCATACTTTTCATCCATAGATCCCGTTTGTACGAAGCCTGAGCCTC
TCGACGCCAACGTCGCTCGGGTTTGGGTGAAGGTGCCCTGCGATTATACA
CGACGACTCCTCATCCACGCCATTGCCCGTCGACAGCCCCGCTTGGCGCT
AGTCAAACGAGAGGAGGATGCTTCGATCTTATGGGCGGACTACGAGGACC
TAAATTTCGACCGTGTCTTGGCTGGCCATGGCGAGATCAAGGCCAACTCC
TACCTGATTAGGAAAGGCCTTGGTCGCAAGGCTCAGCTGGCTTACCAGTT
GCGGAAGTACATGGCTAAAAGACCAGAATCAGCGCTGCACGGAGCCATAC
CTGAGACATTGGTGATTGAAACCTGGGAAGCCTTTGAGGAGGAAATGAGC
TTTGGGGCCTTGGGTGCGACGTTCGATCAAAATCTCACGGCCAACCTTTC
ACAGCGGGACCGCCTGGAATGGTGCCTCCGGGATACCAAAGAGCGGCTCG
CCCAAACGCAGGGACAGATCTGGATCCTTAAGCCTAGTGTCACCAACAAA
GGCGCGGAAGTCACGGTGCTGCGGGATTATGTGACAATAGCAGACGTGGT
GGGGGAATGGCCGGACGTCCGAGAGTGGGTGTTGCAAGCATATGTCACTC
GACCGCTGCTTCACCGCCGAAAGAAGTTTCATTTGCGTTGCTATGTCCTG
GCTGTGGGAGATTTGTCTGTGTACGTCTGGCGGCAGGTGTTGCTGTTGAG
CTCGGCAATGGAGTACAATGAGCAGGACTTGCGAAATCAACTTGTGCACA
TTACAAACACCGCTCGGCAAGTGGAAGACGGAGAATCGCACCTCGTGGTG
GAGGAGGAGTGCGTCTTTTTGTTGGATGACTTGGTGGCAGATTTGAAAGA
AAGTCGGGGGCTTAAGTGGGGAGAAGCAGAGAGTGTGGTGGAGGATATTC
GAAAAGGGATGGAGGAGGTGACAGCAGAGCTGTTCAAAGCCTTACATCTA
GAACGCACAGTCTTTGCCCCTATCCCGCAGTGCTTCGAGCTGCTGGGGCT
GGATTTCCTTGTATCTCTCGACGAGGACAATGAGAAAGATGAAACGCCTA
AGCCACTCCCGCAAGTTCACCTGCTGGAAGTAAATCCGGGACCGGACTTC
AAACAAACGGGGCCGCGGCTTCGTTCGGTGATAGAGGGGCTGTTGGAAGC
CACGCTTGATGTGGCGGTGCTAGATGATCATGTGGAGGGCACGGAGGACT
TGGTATTGGTGTACCAGTCGTTACACAGGCAAAATGGTGAATCCGGGATG
CGGTTATTGGAAGGATGA
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Synonyms
Publications