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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:413826..415740 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G01380.1 vs.
Match: XP_009840119.1 (hypothetical protein H257_14084 [Aphanomyces astaci]; ETV70407.1 hypothetical protein H257_14084 [Aphanomyces astaci]) HSP 1 Score: 119.4 bits (298), Expect = 2.100e-23 Identity = 71/212 (33.49%), Postives = 104/212 (49.06%), Query Frame = 0
Query: 30 RKHGLQLPLSRDQLGAMIIYPLLTLAFYLIASFYLPNAYLPLVLGLYSTLVFFSLFCWGYISLTDPAQPGGISCRCMKFTQGHSRYCASCRKSVPGLDHHCLWLNTCIGTRNYLFFFLLALAGTLQFGLQTLTSLLLLTLWFKPASSSTMTASAEEVSHAISRTVGKRLTFKAFMIVHTVAAALAFVSFASLCIFHGYLQSKGLGTYDWILR 242
R G Q P SRDQ+ + ++ P+L AF + + YLP VL Y V CW + +PA P ++ C+ +RYC C K+ PGLDHHC WLNTCIG NY FF+L ++GT+ Q + +L+ + W A + T G L A + +H + +++ +L FH YL +GTYD+IL+
Sbjct: 6 RIQGFQRPFSRDQVTSWVLQPVLIAAFVALTTSYLPGLLALWVLIPYGVFVAVFGVCWFLCEVRNPASPTAVAKWCVPVPSKPTRYCTVCNKNSPGLDHHCTWLNTCIGDNNYEPFFILIVSGTVLTSYQAVVGILMASTWH---------ADIAALHSPTGNTSGGAL---AALWIHNAVCIILAIAYGALTSFHVYLLVLRMGTYDYILK 205
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G01380.1 ID=NO02G01380.1|Name=NO02G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1577bp ATTTTGTGATGTGGTTTATGGCCTCAACTACAATATTATATTTGTTCGTA GAATTGAGGCAGTCGTATCTGGCCCCGGTAAGTGCATCGATGTCGTGCTG CCAAGCCTTGACGAAACCTTGCGAATTCTTGCCAGGAGTAAAAGTATGCT TGCCTCTTTTCACCTTGCTTTGTTCCATGACGTCGGATGGCATTGTCTCG CATGCCTCGTACAGGCTGTTGTAGTAAATGTGCCTGGATGTTTGGAGCAG GCGCGTAGCGGCAGTTGCCTGAGCGACGACAGCGATAGCCTAGAGCGTCT TCACTCCTAACACCCTCATGCGGCAACCTCACCGCATGATCATATCCACC CTACACAGTTCAAGCATGTTGCCCGGTTATCAGCCTCCTCGTTGGGCTCC GCCTAGGAAGCACGGTCTGCAATTGCCCCTCTCTCGGGACCAACTGGGCG CTATGATCATCTACCCGCTCCTGACCCTGGCCTTCTACCTCATCGCCTCC TTCTACCTCCCAAACGCCTATCTTCCCCTGGTCCTTGGTCTTTACTCCAC TCTCGTCTTTTTTTCCCTCTTCTGCTGGGGCTACATTTCTTTGACTGATC CCGCCCAACCAGGAGGAATTTCTTGTCGATGTATGAAGTTCACGCAAGGG CACTCGCGATATTGCGCCTCGTGTCGAAAATCAGTCCCGGGGCTCGACCA CCATTGCCTGTGGCTTAATACGTGCATTGGAACTCGAAATTATCTCTTCT TCTTCCTGCTTGCCCTTGCCGGGACATTGCAATTCGGACTCCAAACCCTG ACCAGCCTCCTCCTTCTCACCCTCTGGTTCAAACCTGCCTCCTCCTCCAC CATGACCGCCTCCGCCGAGGAGGTCTCCCATGCCATCAGTCGCACTGTCG GGAAACGACTTACTTTCAAAGCCTTTATGATCGTTCACACGGTTGCGGCT GCTCTGGCCTTCGTTTCCTTCGCCTCCCTGTGTATCTTCCATGGGTACCT GCAAAGTAAAGGGCTTGGAACGTATGACTGGATCTTGCGGCAGAGGGTCA TTCCTCCCGCCACGACTCGACCTTCTGGAGCTGCTGTTGAGTCTGCTAGT GTAGGGACGGGGAACACAGCAGCGACTAGGCCGATTGGGGGAGGACGCGG CGGCAGCAGCCATATCAACAGCAATAGCAACAGCAATGGAGGATCCTCCC AACCCGGGGCATCACTACCTCCACCGCCTTCCACATCCATGGCAACCTTA ACATCAGAAGCCGCAACAGGAGCAATTTCAGATGGAGAGCATGTAGCTGT CAATGTTTCCCCCCCTTCCACTTGACCTCTGATGAGAGGTATTTTAAAGC AGGCAAGGGAGGGAGGAAGGAAGAAATGGTTACTAATGGCCCAGACGCGG CAGCGACCACAACGGAGATAGGAGGGGAGGGAGTGCAAAGACGACATGAC GAAGAACATGGCGTAAGGAGGGAATAAAAATGAGTAAATAGAAGTTAAAG TTCGAAAGACATCATCGAAAAAAGATTCATTGATGAAGGCACTTTTCTCT TTGTCTGTTGGCTTGGTCGATCATCGG back to topprotein sequence of NO02G01380.1 >NO02G01380.1-protein ID=NO02G01380.1-protein|Name=NO02G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp MRQPHRMIISTLHSSSMLPGYQPPRWAPPRKHGLQLPLSRDQLGAMIIYP LLTLAFYLIASFYLPNAYLPLVLGLYSTLVFFSLFCWGYISLTDPAQPGG ISCRCMKFTQGHSRYCASCRKSVPGLDHHCLWLNTCIGTRNYLFFFLLAL AGTLQFGLQTLTSLLLLTLWFKPASSSTMTASAEEVSHAISRTVGKRLTF KAFMIVHTVAAALAFVSFASLCIFHGYLQSKGLGTYDWILRQRVIPPATT RPSGAAVESASVGTGNTAATRPIGGGRGGSSHINSNSNSNGGSSQPGASL PPPPSTSMATLTSEAATGAISDGEHVAVNVSPPST* back to topmRNA from alignment at chr2:413826..415740+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G01380.1 ID=NO02G01380.1|Name=NO02G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1915bp|location=Sequence derived from alignment at chr2:413826..415740+ (Nannochloropsis oceanica) ATTTTGTGATGTGGTTTATGGCCTCAACTACAATATTATATTTGTTCGTA
GAATTGAGGCAGTCGTATCTGGCCCCGGTAAGTGCATCGATGTCGTGCTG
CCAAGCCTTGACGAAACCTTGCGAATTCTTGCCAGGAGTAAAAGTATGCT
TGCCTCTTTTCACCTTGCTTTGTTCCATGACGTCGGATGGCATTGTCTCG
CATGCCTCGTACAGGCTGTTGTAGTAAATGTGCCTGGATGTTTGGAGCAG
GCGCGTAGCGGCAGTTGCCTGAGCGACGACAGCGATAGCCTAGAGCGTCT
TCACTCCTAACACCCTCATGCGGCAACCTCACCGCATGATCATATCCACC
CTACACAGTTCAAGCATGTTGCCCGGTTATCAGCCTCCTCGTTGGGCTCC
GCCTAGGAAGCACGGTCTGCAATTGCCCCTCTCTCGGGACCAACTGGGCG
CTATGATCATCTACCCGCTCCTGACCCTGGTACGTGTGTGCGCGCTCGCG
GCGCGGAGAGGGGACGACATGGAAGAAATTGGATGCAGCAAGTAAAGCAC
GTCCGGATTGTCCTAAGTACTCGTATTCTGTACACTTGGCTCTACAGCTC
GCTAACTGACCCCTCCCTCTTTTCCTCCCTTTTCCGAAATCCAAGGCCTT
CTACCTCATCGCCTCCTTCTACCTCCCAAACGCCTATCTTCCCCTGGTCC
TTGGTCTTTACTCCACTCTCGTCTTTTTTTCCCTCTTCTGCTGGGGCTAC
ATTTCTTTGACTGATCCCGCCCAACCAGGAGGAATTTCTTGTCGATGTAT
GAAGTTCACGCAAGGGCACTCGCGATATTGCGCCTCGTGTCGAAAATCAG
TCCCGGGGCTCGACCACCATTGCCTGTGGCTTAATACGTGCATTGGAACT
CGGTGCGTTTGAGGAGAAGGGGGGAGGGAGAGGGGTAGGAAGGGCTCTAC
TTCGATCCAGGGATGTTCGCGCTCGAATGACCGCGAGGACGCAAGTAACT
TGCTGCTCTCATTTATTTCTAACCTCATTGTTTATTACCTCTCTCTCTCC
ACCTCTCCCCCTCGTTCTCTTCAGAAATTATCTCTTCTTCTTCCTGCTTG
CCCTTGCCGGGACATTGCAATTCGGACTCCAAACCCTGACCAGCCTCCTC
CTTCTCACCCTCTGGTTCAAACCTGCCTCCTCCTCCACCATGACCGCCTC
CGCCGAGGAGGTCTCCCATGCCATCAGTCGCACTGTCGGGAAACGACTTA
CTTTCAAAGCCTTTATGATCGTTCACACGGTTGCGGCTGCTCTGGCCTTC
GTTTCCTTCGCCTCCCTGTGTATCTTCCATGGGTACCTGCAAAGTAAAGG
GCTTGGAACGTATGACTGGATCTTGCGGCAGAGGGTCATTCCTCCCGCCA
CGACTCGACCTTCTGGAGCTGCTGTTGAGTCTGCTAGTGTAGGGACGGGG
AACACAGCAGCGACTAGGCCGATTGGGGGAGGACGCGGCGGCAGCAGCCA
TATCAACAGCAATAGCAACAGCAATGGAGGATCCTCCCAACCCGGGGCAT
CACTACCTCCACCGCCTTCCACATCCATGGCAACCTTAACATCAGAAGCC
GCAACAGGAGCAATTTCAGATGGAGAGCATGTAGCTGTCAATGTTTCCCC
CCCTTCCACTTGACCTCTGATGAGAGGTATTTTAAAGCAGGCAAGGGAGG
GAGGAAGGAAGAAATGGTTACTAATGGCCCAGACGCGGCAGCGACCACAA
CGGAGATAGGAGGGGAGGGAGTGCAAAGACGACATGACGAAGAACATGGC
GTAAGGAGGGAATAAAAATGAGTAAATAGAAGTTAAAGTTCGAAAGACAT
CATCGAAAAAAGATTCATTGATGAAGGCACTTTTCTCTTTGTCTGTTGGC
TTGGTCGATCATCGG back to topCoding sequence (CDS) from alignment at chr2:413826..415740+ >NO02G01380.1 ID=NO02G01380.1|Name=NO02G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at chr2:413826..415740+ (Nannochloropsis oceanica) ATGCGGCAACCTCACCGCATGATCATATCCACCCTACACAGTTCAAGCAT GTTGCCCGGTTATCAGCCTCCTCGTTGGGCTCCGCCTAGGAAGCACGGTC TGCAATTGCCCCTCTCTCGGGACCAACTGGGCGCTATGATCATCTACCCG CTCCTGACCCTGGCCTTCTACCTCATCGCCTCCTTCTACCTCCCAAACGC CTATCTTCCCCTGGTCCTTGGTCTTTACTCCACTCTCGTCTTTTTTTCCC TCTTCTGCTGGGGCTACATTTCTTTGACTGATCCCGCCCAACCAGGAGGA ATTTCTTGTCGATGTATGAAGTTCACGCAAGGGCACTCGCGATATTGCGC CTCGTGTCGAAAATCAGTCCCGGGGCTCGACCACCATTGCCTGTGGCTTA ATACGTGCATTGGAACTCGAAATTATCTCTTCTTCTTCCTGCTTGCCCTT GCCGGGACATTGCAATTCGGACTCCAAACCCTGACCAGCCTCCTCCTTCT CACCCTCTGGTTCAAACCTGCCTCCTCCTCCACCATGACCGCCTCCGCCG AGGAGGTCTCCCATGCCATCAGTCGCACTGTCGGGAAACGACTTACTTTC AAAGCCTTTATGATCGTTCACACGGTTGCGGCTGCTCTGGCCTTCGTTTC CTTCGCCTCCCTGTGTATCTTCCATGGGTACCTGCAAAGTAAAGGGCTTG GAACGTATGACTGGATCTTGCGGCAGAGGGTCATTCCTCCCGCCACGACT CGACCTTCTGGAGCTGCTGTTGAGTCTGCTAGTGTAGGGACGGGGAACAC AGCAGCGACTAGGCCGATTGGGGGAGGACGCGGCGGCAGCAGCCATATCA ACAGCAATAGCAACAGCAATGGAGGATCCTCCCAACCCGGGGCATCACTA CCTCCACCGCCTTCCACATCCATGGCAACCTTAACATCAGAAGCCGCAAC AGGAGCAATTTCAGATGGAGAGCATGTAGCTGTCAATGTTTCCCCCCCTT CCACTTGA back to top
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