NO02G01380.1, NO02G01380.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01380.1
Unique NameNO02G01380.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1577
Alignment locationchr2:413826..415740 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:413826..415740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G01380.1 vs.
Match: XP_009840119.1 (hypothetical protein H257_14084 [Aphanomyces astaci]; ETV70407.1 hypothetical protein H257_14084 [Aphanomyces astaci])

HSP 1 Score: 119.4 bits (298), Expect = 2.100e-23
Identity = 71/212 (33.49%), Postives = 104/212 (49.06%), Query Frame = 0
Query:   30 RKHGLQLPLSRDQLGAMIIYPLLTLAFYLIASFYLPNAYLPLVLGLYSTLVFFSLFCWGYISLTDPAQPGGISCRCMKFTQGHSRYCASCRKSVPGLDHHCLWLNTCIGTRNYLFFFLLALAGTLQFGLQTLTSLLLLTLWFKPASSSTMTASAEEVSHAISRTVGKRLTFKAFMIVHTVAAALAFVSFASLCIFHGYLQSKGLGTYDWILR 242
            R  G Q P SRDQ+ + ++ P+L  AF  + + YLP      VL  Y   V     CW    + +PA P  ++  C+      +RYC  C K+ PGLDHHC WLNTCIG  NY  FF+L ++GT+    Q +  +L+ + W          A    +      T G  L   A + +H     +  +++ +L  FH YL    +GTYD+IL+
Sbjct:    6 RIQGFQRPFSRDQVTSWVLQPVLIAAFVALTTSYLPGLLALWVLIPYGVFVAVFGVCWFLCEVRNPASPTAVAKWCVPVPSKPTRYCTVCNKNSPGLDHHCTWLNTCIGDNNYEPFFILIVSGTVLTSYQAVVGILMASTWH---------ADIAALHSPTGNTSGGAL---AALWIHNAVCIILAIAYGALTSFHVYLLVLRMGTYDYILK 205          
The following BLAST results are available for this feature:
BLAST of NO02G01380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009840119.12.100e-2333.49hypothetical protein H257_14084 [Aphanomyces astac... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01380NO02G01380Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01380.1NO02G01380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01380.1.cds1NO02G01380.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01380.1.cds2NO02G01380.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01380.1.cds3NO02G01380.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01380.1 ID=NO02G01380.1|Name=NO02G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1577bp
ATTTTGTGATGTGGTTTATGGCCTCAACTACAATATTATATTTGTTCGTA
GAATTGAGGCAGTCGTATCTGGCCCCGGTAAGTGCATCGATGTCGTGCTG
CCAAGCCTTGACGAAACCTTGCGAATTCTTGCCAGGAGTAAAAGTATGCT
TGCCTCTTTTCACCTTGCTTTGTTCCATGACGTCGGATGGCATTGTCTCG
CATGCCTCGTACAGGCTGTTGTAGTAAATGTGCCTGGATGTTTGGAGCAG
GCGCGTAGCGGCAGTTGCCTGAGCGACGACAGCGATAGCCTAGAGCGTCT
TCACTCCTAACACCCTCATGCGGCAACCTCACCGCATGATCATATCCACC
CTACACAGTTCAAGCATGTTGCCCGGTTATCAGCCTCCTCGTTGGGCTCC
GCCTAGGAAGCACGGTCTGCAATTGCCCCTCTCTCGGGACCAACTGGGCG
CTATGATCATCTACCCGCTCCTGACCCTGGCCTTCTACCTCATCGCCTCC
TTCTACCTCCCAAACGCCTATCTTCCCCTGGTCCTTGGTCTTTACTCCAC
TCTCGTCTTTTTTTCCCTCTTCTGCTGGGGCTACATTTCTTTGACTGATC
CCGCCCAACCAGGAGGAATTTCTTGTCGATGTATGAAGTTCACGCAAGGG
CACTCGCGATATTGCGCCTCGTGTCGAAAATCAGTCCCGGGGCTCGACCA
CCATTGCCTGTGGCTTAATACGTGCATTGGAACTCGAAATTATCTCTTCT
TCTTCCTGCTTGCCCTTGCCGGGACATTGCAATTCGGACTCCAAACCCTG
ACCAGCCTCCTCCTTCTCACCCTCTGGTTCAAACCTGCCTCCTCCTCCAC
CATGACCGCCTCCGCCGAGGAGGTCTCCCATGCCATCAGTCGCACTGTCG
GGAAACGACTTACTTTCAAAGCCTTTATGATCGTTCACACGGTTGCGGCT
GCTCTGGCCTTCGTTTCCTTCGCCTCCCTGTGTATCTTCCATGGGTACCT
GCAAAGTAAAGGGCTTGGAACGTATGACTGGATCTTGCGGCAGAGGGTCA
TTCCTCCCGCCACGACTCGACCTTCTGGAGCTGCTGTTGAGTCTGCTAGT
GTAGGGACGGGGAACACAGCAGCGACTAGGCCGATTGGGGGAGGACGCGG
CGGCAGCAGCCATATCAACAGCAATAGCAACAGCAATGGAGGATCCTCCC
AACCCGGGGCATCACTACCTCCACCGCCTTCCACATCCATGGCAACCTTA
ACATCAGAAGCCGCAACAGGAGCAATTTCAGATGGAGAGCATGTAGCTGT
CAATGTTTCCCCCCCTTCCACTTGACCTCTGATGAGAGGTATTTTAAAGC
AGGCAAGGGAGGGAGGAAGGAAGAAATGGTTACTAATGGCCCAGACGCGG
CAGCGACCACAACGGAGATAGGAGGGGAGGGAGTGCAAAGACGACATGAC
GAAGAACATGGCGTAAGGAGGGAATAAAAATGAGTAAATAGAAGTTAAAG
TTCGAAAGACATCATCGAAAAAAGATTCATTGATGAAGGCACTTTTCTCT
TTGTCTGTTGGCTTGGTCGATCATCGG
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protein sequence of NO02G01380.1

>NO02G01380.1-protein ID=NO02G01380.1-protein|Name=NO02G01380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MRQPHRMIISTLHSSSMLPGYQPPRWAPPRKHGLQLPLSRDQLGAMIIYP
LLTLAFYLIASFYLPNAYLPLVLGLYSTLVFFSLFCWGYISLTDPAQPGG
ISCRCMKFTQGHSRYCASCRKSVPGLDHHCLWLNTCIGTRNYLFFFLLAL
AGTLQFGLQTLTSLLLLTLWFKPASSSTMTASAEEVSHAISRTVGKRLTF
KAFMIVHTVAAALAFVSFASLCIFHGYLQSKGLGTYDWILRQRVIPPATT
RPSGAAVESASVGTGNTAATRPIGGGRGGSSHINSNSNSNGGSSQPGASL
PPPPSTSMATLTSEAATGAISDGEHVAVNVSPPST*
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mRNA from alignment at chr2:413826..415740+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01380.1 ID=NO02G01380.1|Name=NO02G01380.1|organism=Nannochloropsis oceanica|type=mRNA|length=1915bp|location=Sequence derived from alignment at chr2:413826..415740+ (Nannochloropsis oceanica)
ATTTTGTGATGTGGTTTATGGCCTCAACTACAATATTATATTTGTTCGTA GAATTGAGGCAGTCGTATCTGGCCCCGGTAAGTGCATCGATGTCGTGCTG CCAAGCCTTGACGAAACCTTGCGAATTCTTGCCAGGAGTAAAAGTATGCT TGCCTCTTTTCACCTTGCTTTGTTCCATGACGTCGGATGGCATTGTCTCG CATGCCTCGTACAGGCTGTTGTAGTAAATGTGCCTGGATGTTTGGAGCAG GCGCGTAGCGGCAGTTGCCTGAGCGACGACAGCGATAGCCTAGAGCGTCT TCACTCCTAACACCCTCATGCGGCAACCTCACCGCATGATCATATCCACC CTACACAGTTCAAGCATGTTGCCCGGTTATCAGCCTCCTCGTTGGGCTCC GCCTAGGAAGCACGGTCTGCAATTGCCCCTCTCTCGGGACCAACTGGGCG CTATGATCATCTACCCGCTCCTGACCCTGGTACGTGTGTGCGCGCTCGCG GCGCGGAGAGGGGACGACATGGAAGAAATTGGATGCAGCAAGTAAAGCAC GTCCGGATTGTCCTAAGTACTCGTATTCTGTACACTTGGCTCTACAGCTC GCTAACTGACCCCTCCCTCTTTTCCTCCCTTTTCCGAAATCCAAGGCCTT CTACCTCATCGCCTCCTTCTACCTCCCAAACGCCTATCTTCCCCTGGTCC TTGGTCTTTACTCCACTCTCGTCTTTTTTTCCCTCTTCTGCTGGGGCTAC ATTTCTTTGACTGATCCCGCCCAACCAGGAGGAATTTCTTGTCGATGTAT GAAGTTCACGCAAGGGCACTCGCGATATTGCGCCTCGTGTCGAAAATCAG TCCCGGGGCTCGACCACCATTGCCTGTGGCTTAATACGTGCATTGGAACT CGGTGCGTTTGAGGAGAAGGGGGGAGGGAGAGGGGTAGGAAGGGCTCTAC TTCGATCCAGGGATGTTCGCGCTCGAATGACCGCGAGGACGCAAGTAACT TGCTGCTCTCATTTATTTCTAACCTCATTGTTTATTACCTCTCTCTCTCC ACCTCTCCCCCTCGTTCTCTTCAGAAATTATCTCTTCTTCTTCCTGCTTG CCCTTGCCGGGACATTGCAATTCGGACTCCAAACCCTGACCAGCCTCCTC CTTCTCACCCTCTGGTTCAAACCTGCCTCCTCCTCCACCATGACCGCCTC CGCCGAGGAGGTCTCCCATGCCATCAGTCGCACTGTCGGGAAACGACTTA CTTTCAAAGCCTTTATGATCGTTCACACGGTTGCGGCTGCTCTGGCCTTC GTTTCCTTCGCCTCCCTGTGTATCTTCCATGGGTACCTGCAAAGTAAAGG GCTTGGAACGTATGACTGGATCTTGCGGCAGAGGGTCATTCCTCCCGCCA CGACTCGACCTTCTGGAGCTGCTGTTGAGTCTGCTAGTGTAGGGACGGGG AACACAGCAGCGACTAGGCCGATTGGGGGAGGACGCGGCGGCAGCAGCCA TATCAACAGCAATAGCAACAGCAATGGAGGATCCTCCCAACCCGGGGCAT CACTACCTCCACCGCCTTCCACATCCATGGCAACCTTAACATCAGAAGCC GCAACAGGAGCAATTTCAGATGGAGAGCATGTAGCTGTCAATGTTTCCCC CCCTTCCACTTGACCTCTGATGAGAGGTATTTTAAAGCAGGCAAGGGAGG GAGGAAGGAAGAAATGGTTACTAATGGCCCAGACGCGGCAGCGACCACAA CGGAGATAGGAGGGGAGGGAGTGCAAAGACGACATGACGAAGAACATGGC GTAAGGAGGGAATAAAAATGAGTAAATAGAAGTTAAAGTTCGAAAGACAT CATCGAAAAAAGATTCATTGATGAAGGCACTTTTCTCTTTGTCTGTTGGC TTGGTCGATCATCGG
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Coding sequence (CDS) from alignment at chr2:413826..415740+

>NO02G01380.1 ID=NO02G01380.1|Name=NO02G01380.1|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at chr2:413826..415740+ (Nannochloropsis oceanica)
ATGCGGCAACCTCACCGCATGATCATATCCACCCTACACAGTTCAAGCAT
GTTGCCCGGTTATCAGCCTCCTCGTTGGGCTCCGCCTAGGAAGCACGGTC
TGCAATTGCCCCTCTCTCGGGACCAACTGGGCGCTATGATCATCTACCCG
CTCCTGACCCTGGCCTTCTACCTCATCGCCTCCTTCTACCTCCCAAACGC
CTATCTTCCCCTGGTCCTTGGTCTTTACTCCACTCTCGTCTTTTTTTCCC
TCTTCTGCTGGGGCTACATTTCTTTGACTGATCCCGCCCAACCAGGAGGA
ATTTCTTGTCGATGTATGAAGTTCACGCAAGGGCACTCGCGATATTGCGC
CTCGTGTCGAAAATCAGTCCCGGGGCTCGACCACCATTGCCTGTGGCTTA
ATACGTGCATTGGAACTCGAAATTATCTCTTCTTCTTCCTGCTTGCCCTT
GCCGGGACATTGCAATTCGGACTCCAAACCCTGACCAGCCTCCTCCTTCT
CACCCTCTGGTTCAAACCTGCCTCCTCCTCCACCATGACCGCCTCCGCCG
AGGAGGTCTCCCATGCCATCAGTCGCACTGTCGGGAAACGACTTACTTTC
AAAGCCTTTATGATCGTTCACACGGTTGCGGCTGCTCTGGCCTTCGTTTC
CTTCGCCTCCCTGTGTATCTTCCATGGGTACCTGCAAAGTAAAGGGCTTG
GAACGTATGACTGGATCTTGCGGCAGAGGGTCATTCCTCCCGCCACGACT
CGACCTTCTGGAGCTGCTGTTGAGTCTGCTAGTGTAGGGACGGGGAACAC
AGCAGCGACTAGGCCGATTGGGGGAGGACGCGGCGGCAGCAGCCATATCA
ACAGCAATAGCAACAGCAATGGAGGATCCTCCCAACCCGGGGCATCACTA
CCTCCACCGCCTTCCACATCCATGGCAACCTTAACATCAGAAGCCGCAAC
AGGAGCAATTTCAGATGGAGAGCATGTAGCTGTCAATGTTTCCCCCCCTT
CCACTTGA
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Synonyms
Publications