NO02G01370.1, NO02G01370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01370.1
Unique NameNO02G01370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1970
Alignment locationchr2:411227..413825 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:411227..413825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01370.1 vs.
Match: EWM30495.1 (dnaj domain protein [Nannochloropsis gaditana])

HSP 1 Score: 615.1 bits (1585), Expect = 1.400e-172
Identity = 294/364 (80.77%), Postives = 330/364 (90.66%), Query Frame = 0 
Query:   18 RSPASLLLVGLCLLGLLLGGHGAEDYYKILKVKRTASQSEIKKAWRKLSLDLHPDKNNSPTAQDDFATASNAYTILSNEEKREVYDREGVEGLKRMDAREQQGGMDPFGGGIFEAFGFGGFGGGGRRRDEEMKTPNVVIPLRVSLKQLYTGDILEVTYVRQVLCMNHKECTKSDSSCHGPGVRIRQQQIAPGFVQQVQVRDESCVARGKSWKKGCAGCPKGQTQSEEVKLTVDIVPGMKDGDTISFGEVADEKVGHSAGDLIVHIQAIPHQFYTRQGDDLKITLKVGLLDALVGFETSVQQVDGREVSLIKPTVTSHGEVQRVKGQGMPKKNGNGLGDLLITWEVTFPDAVTDAQKVLLRQALA 382
            R  +S +L  LCLL  +L GHGAEDYYK L VKR+ASQSEIKKAWRKLSLDLHPDKNNSP AQ+ FATASNAYTILSNEE+REVYDREG EGLKRM+ARE QG MDPFGGGIFEAFGFGGFGGGGRRRDEE KTPNVVIPLRVSLKQL+TGD+LEVTY+RQVLCMNHK+CTK    C GPG+R+RQQQ+APGF+QQVQVRDE+CVARGK+W+KGC+ CP GQTQ EEVKLTVDI PGMKDG+ I+F +VADEKVGHSAGDL+VH+QAIPH+FYTR GDDL+++LKVGLLDALVGFET+V+QVDGR+V L KPTVTSHGEVQRVKGQGMPK  G+GLGDLLITWEVTFP+A+TD QK LL++ALA
Sbjct:   25 RRSSSFMLFSLCLLIFILRGHGAEDYYKTLGVKRSASQSEIKKAWRKLSLDLHPDKNNSPDAQEKFATASNAYTILSNEERREVYDREGEEGLKRMEAREAQGNMDPFGGGIFEAFGFGGFGGGGRRRDEEAKTPNVVIPLRVSLKQLFTGDLLEVTYIRQVLCMNHKDCTKPAPECQGPGIRLRQQQLAPGFIQQVQVRDETCVARGKAWRKGCSACPNGQTQPEEVKLTVDIQPGMKDGEMITFSDVADEKVGHSAGDLVVHVQAIPHEFYTRHGDDLRVSLKVGLLDALVGFETTVKQVDGRDVKLNKPTVTSHGEVQRVKGQGMPKSGGSGLGDLLITWEVTFPEALTDEQKALLKKALA 388
The following BLAST results are available for this feature:
BLAST of NO02G01370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30495.11.400e-17280.77dnaj domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01370NO02G01370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01370.1NO02G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01370.1.cds1NO02G01370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01370.1.cds2NO02G01370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01370.1.cds3NO02G01370.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01370.1 ID=NO02G01370.1|Name=NO02G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1970bp
GGTCTATGTCCTCCGGTATGGGCCCAGCTGGCCTCGTCATGCTGCCGTTG
GCTGCTGCTCCTTGCTTTTACTCGTTTGAAAATGCTCGGGACCCATAGAC
CCCGGCCATCTGTGTGTAAGCTCTCCACATACGCTTGGCAACGGCACAAT
GATGTGCAGGATCACAATAAGGGCAACTCACGCTTTCTATCCCTCATGCA
GTCGGCATTCGTCCGCCTCTCCAACAAGGCAAACGCACGCCTCAAGGCTC
TTCGTCATCATCCATGATAATGCTTCTGCAGAGCACCACCATTGCTAGCA
GGAGAGGTCGTGGACGGTCTCCTGCCTCGCTGTTGTTAGTAGGCCTGTGC
CTACTTGGCCTCTTATTGGGCGGCCATGGAGCAGAGGACTACTACAAAAT
TTTGAAAGTGAAGCGTACCGCGTCGCAATCGGAGATCAAAAAGGCATGGC
GAAAGCTGTCCTTGGATTTGCACCCCGATAAGAATAATAGCCCCACCGCC
CAAGATGACTTCGCCACGGCGTCCAACGCTTACACCATCCTGTCGAATGA
GGAGAAGCGTGAGGTGTACGACAGGGAGGGCGTGGAGGGATTGAAGAGGA
TGGATGCTCGGGAGCAGCAGGGAGGGATGGATCCGTTCGGTGGTGGGATT
TTCGAGGCGTTCGGTTTCGGAGGCTTTGGTGGGGGGGGGCGAAGACGGGA
TGAAGAGATGAAGACTCCGAATGTTGTCATACCGTTGAGGGTGTCATTGA
AACAGTTGTACACCGGGGATATTCTAGAGGTGACATATGTGAGGCAAGTG
TTGTGTATGAATCATAAGGAGTGCACGAAGAGTGATAGTTCTTGCCACGG
GCCGGGTGTGAGGATTCGGCAGCAGCAGATTGCCCCGGGTTTCGTTCAGC
AGGTACAAGTGAGGGATGAATCGTGCGTGGCGCGAGGGAAGAGCTGGAAG
AAGGGATGTGCGGGTTGCCCGAAAGGACAGACGCAGTCGGAGGAGGTGAA
GCTGACTGTGGACATCGTGCCAGGCATGAAGGACGGGGATACCATCTCCT
TTGGGGAGGTTGCGGATGAGAAGGTTGGACATTCTGCGGGGGATCTGATT
GTGCATATCCAGGCGATCCCGCATCAGTTTTATACGAGACAGGGGGATGA
TCTGAAGATCACGCTGAAGGTGGGCTTGCTTGATGCCCTGGTGGGGTTTG
AGACAAGCGTGCAGCAAGTAGATGGACGGGAGGTGAGTCTAATTAAGCCG
ACCGTGACTTCGCATGGGGAGGTGCAACGGGTCAAGGGGCAGGGCATGCC
CAAGAAGAATGGGAATGGCCTAGGTGATTTGTTGATTACTTGGGAAGTGA
CGTTCCCGGATGCGGTGACAGACGCGCAGAAAGTCTTGTTGAGGCAGGCG
TTGGCCTGAGCGGGAGGGGATGGAGAATGATGGGATACAGAATTAATGAG
TCAGTACCTGCAGCGGGAGCAGCAAACGAGCATGATTGTAGCCTAGGTAC
ATAGAAAGGGGCGAGAAAAGTGAATCCGCAGCACGCTCGTAACTCAAAAA
ACAAAACGTAGAGAAATAAGCGCAGGGAAATATGAAAGCCCAGCGTCAAG
CGAATAAAAATAAAATTTGTAGGCGTCCAGGTTTGATACCACCACCTCAT
GTGACTTCCTCGAGGCCTGCCGGATGAATGATTTTGTCGAGGAGGGTTGG
TGGTGGGAACAGAGATTAGAAAAGAGGACAGAAGAGCGGAAGGCGGAGGG
ATGAAATGCGAAGAGCGGAAGGCAATCTCCATCCATCGCAAGAATGATCC
CTCTTTGACATTTTTAAGATGACTATGGAGTAGATGTTCCTCCTTTTGTA
TCCCTAGGACGAAGAAGACCTGAGAGAGTGTAGCAGTAGCATTGAGAGTT
AGACCCGGCAGATTGAGCGTCCGGCAGCATGAAGTGAAAAAAAAATCCGT
AAGTCCACTTTTATTTTAAT
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protein sequence of NO02G01370.1

>NO02G01370.1-protein ID=NO02G01370.1-protein|Name=NO02G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MIMLLQSTTIASRRGRGRSPASLLLVGLCLLGLLLGGHGAEDYYKILKVK
RTASQSEIKKAWRKLSLDLHPDKNNSPTAQDDFATASNAYTILSNEEKRE
VYDREGVEGLKRMDAREQQGGMDPFGGGIFEAFGFGGFGGGGRRRDEEMK
TPNVVIPLRVSLKQLYTGDILEVTYVRQVLCMNHKECTKSDSSCHGPGVR
IRQQQIAPGFVQQVQVRDESCVARGKSWKKGCAGCPKGQTQSEEVKLTVD
IVPGMKDGDTISFGEVADEKVGHSAGDLIVHIQAIPHQFYTRQGDDLKIT
LKVGLLDALVGFETSVQQVDGREVSLIKPTVTSHGEVQRVKGQGMPKKNG
NGLGDLLITWEVTFPDAVTDAQKVLLRQALA*
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mRNA from alignment at chr2:411227..413825+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01370.1 ID=NO02G01370.1|Name=NO02G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2599bp|location=Sequence derived from alignment at chr2:411227..413825+ (Nannochloropsis oceanica)
GGTCTATGTCCTCCGGTATGGGCCCAGCTGGCCTCGTCATGCTGCCGTTG
GCTGCTGCTCCTTGCTTTTACTCGTTTGAAAATGCTCGGGACCCATAGAC
CCCGGCCATCTGTGTGTAAGCTCTCCACATACGCTTGGCAACGGCACAAT
GATGTGCAGGATCACAATAAGGGCAACTCACGCTTTCTATCCCTCATGCA
GTCGGCATTCGTCCGCCTCTCCAACAAGGCAAACGCACGCCTCAAGGCTC
TTCGTCATCATCCATGATAATGCTTCTGCAGAGCACCACCATTGCTAGCA
GGAGAGGTCGTGGACGGTCTCCTGCCTCGCTGTTGTTAGTAGGCCTGTGC
CTACTTGGCCTCTTATTGGGCGGCCATGGAGCAGAGGACTACTACAAAAT
TTTGGTAAGTGTTTTGCTCTCTCGTGTACACGAGGAAGTGGGGAGGAGGG
GGTGGATCACGGGGTCAGAGAATGGACTTGATGCACTGGAATTAATACGT
GTACGTGTATCGTCATCGTGGCACGAAAAACTACTCTTATTCCGCTCTTT
GACTGTGGAACATGGGGTGGGTCAGTGGATGAGTCTGGGCTTGGGTTACT
CCGAATGTCAGAATCGGAAGGGGAGTCCAGGTCTTGCACAAGTCGATCGT
CTGGTTCACGGCCCAAACAGTGTCGACTGTGAATGCAAAGCACAGTTCTA
CTTCAGTGTACGCTTTTGTTCTTCAGCGTGTTTATATCTTCCTCAAATCC
TATTTGTCCCCACACATTTTAACACTTTTCCATCATTCCTTTTCCTCTCT
CCAACACCCACAGAAAGTGAAGCGTACCGCGTCGCAATCGGAGATCAAAA
AGGCATGGCGAAAGCTGTCCTTGGATTTGCACCCCGATAAGAATAATAGG
TTAGTGTCTTGTGGGAGGTGTATGCCTTTCTTGAGGTGTTTGTGCGTCGT
GACCGGAAGGGCGTGTGCGTCCAAGACGGTGGGGGTCCACATCCGGAAAA
GGAACAGATCGATGCGCTGGCAAGCTTGCCTTTAAGAATGATATCTGTCT
CTACTTGCGACACTTTCTCTTCTCTTTGACTGACACACTTATTATGCTAT
CCCTTCTTCCCACCTTCAGCCCCACCGCCCAAGATGACTTCGCCACGGCG
TCCAACGCTTACACCATCCTGTCGAATGAGGAGAAGCGTGAGGTGTACGA
CAGGGAGGGCGTGGAGGGATTGAAGAGGATGGATGCTCGGGAGCAGCAGG
GAGGGATGGATCCGTTCGGTGGTGGGATTTTCGAGGCGTTCGGTTTCGGA
GGCTTTGGTGGGGGGGGGCGAAGACGGGATGAAGAGATGAAGACTCCGAA
TGTTGTCATACCGTTGAGGGTGTCATTGAAACAGTTGTACACCGGGGATA
TTCTAGAGGTGACATATGTGAGGCAAGTGTTGTGTATGAATCATAAGGAG
TGCACGAAGAGTGATAGTTCTTGCCACGGGCCGGGTGTGAGGATTCGGCA
GCAGCAGATTGCCCCGGGTTTCGTTCAGCAGGTACAAGTGAGGGATGAAT
CGTGCGTGGCGCGAGGGAAGAGCTGGAAGAAGGGATGTGCGGGTTGCCCG
AAAGGACAGACGCAGTCGGAGGAGGTGAAGCTGACTGTGGACATCGTGCC
AGGCATGAAGGACGGGGATACCATCTCCTTTGGGGAGGTTGCGGATGAGA
AGGTTGGACATTCTGCGGGGGATCTGATTGTGCATATCCAGGCGATCCCG
CATCAGTTTTATACGAGACAGGGGGATGATCTGAAGATCACGCTGAAGGT
GGGCTTGCTTGATGCCCTGGTGGGGTTTGAGACAAGCGTGCAGCAAGTAG
ATGGACGGGAGGTGAGTCTAATTAAGCCGACCGTGACTTCGCATGGGGAG
GTGCAACGGGTCAAGGGGCAGGGCATGCCCAAGAAGAATGGGAATGGCCT
AGGTGATTTGTTGATTACTTGGGAAGTGACGTTCCCGGATGCGGTGACAG
ACGCGCAGAAAGTCTTGTTGAGGCAGGCGTTGGCCTGAGCGGGAGGGGAT
GGAGAATGATGGGATACAGAATTAATGAGTCAGTACCTGCAGCGGGAGCA
GCAAACGAGCATGATTGTAGCCTAGGTACATAGAAAGGGGCGAGAAAAGT
GAATCCGCAGCACGCTCGTAACTCAAAAAACAAAACGTAGAGAAATAAGC
GCAGGGAAATATGAAAGCCCAGCGTCAAGCGAATAAAAATAAAATTTGTA
GGCGTCCAGGTTTGATACCACCACCTCATGTGACTTCCTCGAGGCCTGCC
GGATGAATGATTTTGTCGAGGAGGGTTGGTGGTGGGAACAGAGATTAGAA
AAGAGGACAGAAGAGCGGAAGGCGGAGGGATGAAATGCGAAGAGCGGAAG
GCAATCTCCATCCATCGCAAGAATGATCCCTCTTTGACATTTTTAAGATG
ACTATGGAGTAGATGTTCCTCCTTTTGTATCCCTAGGACGAAGAAGACCT
GAGAGAGTGTAGCAGTAGCATTGAGAGTTAGACCCGGCAGATTGAGCGTC
CGGCAGCATGAAGTGAAAAAAAAATCCGTAAGTCCACTTTTATTTTAAT
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Coding sequence (CDS) from alignment at chr2:411227..413825+

>NO02G01370.1 ID=NO02G01370.1|Name=NO02G01370.1|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at chr2:411227..413825+ (Nannochloropsis oceanica)
ATGATAATGCTTCTGCAGAGCACCACCATTGCTAGCAGGAGAGGTCGTGG
ACGGTCTCCTGCCTCGCTGTTGTTAGTAGGCCTGTGCCTACTTGGCCTCT
TATTGGGCGGCCATGGAGCAGAGGACTACTACAAAATTTTGAAAGTGAAG
CGTACCGCGTCGCAATCGGAGATCAAAAAGGCATGGCGAAAGCTGTCCTT
GGATTTGCACCCCGATAAGAATAATAGCCCCACCGCCCAAGATGACTTCG
CCACGGCGTCCAACGCTTACACCATCCTGTCGAATGAGGAGAAGCGTGAG
GTGTACGACAGGGAGGGCGTGGAGGGATTGAAGAGGATGGATGCTCGGGA
GCAGCAGGGAGGGATGGATCCGTTCGGTGGTGGGATTTTCGAGGCGTTCG
GTTTCGGAGGCTTTGGTGGGGGGGGGCGAAGACGGGATGAAGAGATGAAG
ACTCCGAATGTTGTCATACCGTTGAGGGTGTCATTGAAACAGTTGTACAC
CGGGGATATTCTAGAGGTGACATATGTGAGGCAAGTGTTGTGTATGAATC
ATAAGGAGTGCACGAAGAGTGATAGTTCTTGCCACGGGCCGGGTGTGAGG
ATTCGGCAGCAGCAGATTGCCCCGGGTTTCGTTCAGCAGGTACAAGTGAG
GGATGAATCGTGCGTGGCGCGAGGGAAGAGCTGGAAGAAGGGATGTGCGG
GTTGCCCGAAAGGACAGACGCAGTCGGAGGAGGTGAAGCTGACTGTGGAC
ATCGTGCCAGGCATGAAGGACGGGGATACCATCTCCTTTGGGGAGGTTGC
GGATGAGAAGGTTGGACATTCTGCGGGGGATCTGATTGTGCATATCCAGG
CGATCCCGCATCAGTTTTATACGAGACAGGGGGATGATCTGAAGATCACG
CTGAAGGTGGGCTTGCTTGATGCCCTGGTGGGGTTTGAGACAAGCGTGCA
GCAAGTAGATGGACGGGAGGTGAGTCTAATTAAGCCGACCGTGACTTCGC
ATGGGGAGGTGCAACGGGTCAAGGGGCAGGGCATGCCCAAGAAGAATGGG
AATGGCCTAGGTGATTTGTTGATTACTTGGGAAGTGACGTTCCCGGATGC
GGTGACAGACGCGCAGAAAGTCTTGTTGAGGCAGGCGTTGGCCTGA
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Synonyms
Publications