NO02G01350.1, NO02G01350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01350.1
Unique NameNO02G01350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1233
Alignment locationchr2:409023..410630 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:409023..410630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01350.1 vs.
Match: EWM30510.1 (adp-ribosylation factor gtpase-activating protein agd7 [Nannochloropsis gaditana])

HSP 1 Score: 475.3 bits (1222), Expect = 1.900e-130
Identity = 265/393 (67.43%), Postives = 303/393 (77.10%), Query Frame = 0 
Query:   21 TMAHSMDAATERRLRELPGNRVCADCPAPNPQWASVSYGCFICLDCSGQHRALGVHLSFVRSITMDSWTDKQVKLMENGGNEKLVSFLHQRGVEKSLPIHKKYNTPEAELYRERMKALVEGRELPTELPKRVPA-------PVPSDGEGGGQVGSALEPLQGETEAQYVARQRQLNEEARQRMKAKFGPAGLSGGGGGGRMQGFGSDPNYDPSKGGFGGGKGQDIGGEIMGAVGKLGLTVQAHLQEGQLGQKLQMGWSNVSSRVQDPELAAKVKEKASTGWSALATGAVALWSKTADLTVDLVKDITKEEEEPMRLYNRSGGEGAGRGGLVMEGLGSRSGSSSSSSSSSGGGGSGMGGQQQ-------HQQSSMLGMGTSSPFVG---RGGGG 397
            TMAHSMD+ TERRLREL GN+VCADCPAPNPQWASVSYG FICLDCSGQHRALGVHLSFVRSITMDSWTDKQ+KLME GGN++++SF  QRG+ KS+PI +KY T EAELYRER+KA+VEGRE PTELP    A         P+   GGGQ  SALEPL GET+ QYVARQRQLN+EAR RM+AKFGP G   GGGGGRMQGFGSDP+YDPS+G FGGGKGQ++G EI+GAVGK G TVQA LQEGQLG+KLQ  WS V SRVQDPELA+KVKE+AS+GWSALATGA  LWSKTADLTVDLV+DITKEE+EP+R YNR  GEG  R      G G+   +   S + + GG   MG  QQ        +++SML  G  +P++G   R G G
Sbjct:   24 TMAHSMDSVTERRLRELAGNKVCADCPAPNPQWASVSYGSFICLDCSGQHRALGVHLSFVRSITMDSWTDKQIKLMEKGGNDQVISFFQQRGIAKSVPIQQKYKTAEAELYRERIKAVVEGREPPTELPAGARALSASGLGQGPATSSGGGQGVSALEPLPGETQDQYVARQRQLNDEARHRMQAKFGPGGFQ-GGGGGRMQGFGSDPDYDPSRGRFGGGKGQELGNEIIGAVGKWGSTVQAQLQEGQLGKKLQASWSTVQSRVQDPELASKVKERASSGWSALATGAATLWSKTADLTVDLVRDITKEEDEPIRFYNRL-GEGEER------GTGAAVRAEGRSGAGNVGGRRNMGRFQQDLRNGSSEEETSMLDRGADAPYLGSYERDGSG 408
The following BLAST results are available for this feature:
BLAST of NO02G01350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30510.11.900e-13067.43adp-ribosylation factor gtpase-activating protein ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01350NO02G01350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01350.1NO02G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01350.1.cds1NO02G01350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01350.1.cds2NO02G01350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01350.1 ID=NO02G01350.1|Name=NO02G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1233bp
ATGCTTTCTGCTCCACCCACGCACTATCACACAGCCTTTCAGCAACAGCT
CCAGGACGATACGATGGCCCACTCGATGGATGCCGCAACGGAACGTCGCC
TGCGGGAGCTGCCAGGCAACAGGGTCTGCGCCGACTGCCCTGCCCCCAAT
CCCCAGTGGGCCAGCGTCTCTTATGGCTGCTTCATCTGCTTGGACTGCTC
TGGGCAACATCGTGCATTGGGCGTGCATCTATCGTTTGTCCGCTCTATTA
CCATGGATAGTTGGACCGACAAGCAAGTGAAGCTAATGGAGAACGGGGGG
AATGAAAAACTGGTTTCGTTCTTGCATCAGAGGGGGGTGGAGAAGAGTCT
GCCGATACACAAAAAGTACAATACTCCCGAAGCAGAATTGTATAGGGAGA
GGATGAAGGCTTTGGTTGAGGGGAGGGAGCTACCGACGGAGCTCCCGAAG
CGGGTACCTGCTCCTGTTCCTAGTGATGGAGAGGGGGGGGGGCAAGTGGG
TTCGGCCTTGGAACCTTTGCAGGGGGAGACAGAAGCGCAGTATGTGGCGC
GGCAGAGACAGTTGAACGAAGAGGCGAGGCAGAGGATGAAGGCCAAGTTT
GGCCCGGCGGGGTTGAGTGGCGGTGGAGGAGGAGGGAGAATGCAGGGGTT
TGGTAGTGATCCCAATTATGACCCTTCCAAGGGGGGGTTTGGTGGAGGCA
AGGGACAGGATATTGGCGGTGAGATTATGGGAGCTGTGGGAAAGCTAGGG
TTGACGGTGCAGGCGCATTTGCAGGAGGGGCAGTTGGGGCAAAAGCTGCA
GATGGGTTGGAGCAACGTGTCAAGTCGGGTCCAGGATCCGGAGCTGGCAG
CGAAGGTGAAGGAAAAGGCGAGCACGGGCTGGTCGGCACTGGCGACTGGG
GCGGTGGCGCTTTGGAGTAAGACGGCTGATTTGACTGTGGACTTGGTGAA
GGATATAACGAAGGAGGAGGAAGAACCCATGCGATTGTACAATAGGTCAG
GAGGGGAGGGAGCGGGGAGAGGAGGTTTGGTTATGGAGGGATTAGGAAGT
AGAAGTGGAAGTAGTAGTAGCAGCAGCAGCAGCAGTGGTGGTGGTGGATC
GGGGATGGGGGGTCAGCAACAGCATCAGCAGAGCTCGATGTTGGGCATGG
GGACTTCTTCACCTTTTGTCGGCCGTGGAGGCGGGGGGGGTTGGGAGGGA
GTGGAAACGTCTATGGCAAGAGCAGTAGAGTGA
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protein sequence of NO02G01350.1

>NO02G01350.1-protein ID=NO02G01350.1-protein|Name=NO02G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MLSAPPTHYHTAFQQQLQDDTMAHSMDAATERRLRELPGNRVCADCPAPN
PQWASVSYGCFICLDCSGQHRALGVHLSFVRSITMDSWTDKQVKLMENGG
NEKLVSFLHQRGVEKSLPIHKKYNTPEAELYRERMKALVEGRELPTELPK
RVPAPVPSDGEGGGQVGSALEPLQGETEAQYVARQRQLNEEARQRMKAKF
GPAGLSGGGGGGRMQGFGSDPNYDPSKGGFGGGKGQDIGGEIMGAVGKLG
LTVQAHLQEGQLGQKLQMGWSNVSSRVQDPELAAKVKEKASTGWSALATG
AVALWSKTADLTVDLVKDITKEEEEPMRLYNRSGGEGAGRGGLVMEGLGS
RSGSSSSSSSSSGGGGSGMGGQQQHQQSSMLGMGTSSPFVGRGGGGGWEG
VETSMARAVE*
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mRNA from alignment at chr2:409023..410630+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01350.1 ID=NO02G01350.1|Name=NO02G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1608bp|location=Sequence derived from alignment at chr2:409023..410630+ (Nannochloropsis oceanica)
ATGCTTTCTGCTCCACCCACGCACTATCACACAGCCTTTCAGCAACAGCT
CCAGGACGATACGATGGCCCACTCGATGGATGCCGCAACGGAACGTCGCC
TGCGGGAGCTGCCAGGCAACAGGGTACGTTCGTTCATTAAACGATGATGA
TAAATGAATGTGTCGGGGTCCTGTACACTGCAGATCATCGTGTGTGTCCC
TCTGTGCGCCTGTGCTTGTAAGGATACATGTGTGCGCGTGCGTGCTTTAG
TGTACACCCAGATCAAAGACGCAAGAGCGCTGGAGCCCTCCTGTAGTCTG
CATCCGGCCGCCCGCTTCGTTCATGGTGACGATGACGATCTGGGGCTCCC
GTTTCGCGGCAACACCAGACAACCTCAAGCTGACGAAGCTCGAAAATGAC
CTTGCAGTGTACCATGCTTTGATGTCATCGATTGCCCTCTCTTTTTCCTT
GACTCACATTCACCCTCCCCTCCCTCCCAAAATTCCTCTTTCCGTCAGGT
CTGCGCCGACTGCCCTGCCCCCAATCCCCAGTGGGCCAGCGTCTCTTATG
GCTGCTTCATCTGCTTGGACTGCTCTGGGCAACATCGTGCATTGGGCGTG
CATCTATCGTTTGTCCGCTCTATTACCATGGATAGTTGGACCGACAAGCA
AGTGAAGCTAATGGAGAACGGGGGGAATGAAAAACTGGTTTCGTTCTTGC
ATCAGAGGGGGGTGGAGAAGAGTCTGCCGATACACAAAAAGTACAATACT
CCCGAAGCAGAATTGTATAGGGAGAGGATGAAGGCTTTGGTTGAGGGGAG
GGAGCTACCGACGGAGCTCCCGAAGCGGGTACCTGCTCCTGTTCCTAGTG
ATGGAGAGGGGGGGGGGCAAGTGGGTTCGGCCTTGGAACCTTTGCAGGGG
GAGACAGAAGCGCAGTATGTGGCGCGGCAGAGACAGTTGAACGAAGAGGC
GAGGCAGAGGATGAAGGCCAAGTTTGGCCCGGCGGGGTTGAGTGGCGGTG
GAGGAGGAGGGAGAATGCAGGGGTTTGGTAGTGATCCCAATTATGACCCT
TCCAAGGGGGGGTTTGGTGGAGGCAAGGGACAGGATATTGGCGGTGAGAT
TATGGGAGCTGTGGGAAAGCTAGGGTTGACGGTGCAGGCGCATTTGCAGG
AGGGGCAGTTGGGGCAAAAGCTGCAGATGGGTTGGAGCAACGTGTCAAGT
CGGGTCCAGGATCCGGAGCTGGCAGCGAAGGTGAAGGAAAAGGCGAGCAC
GGGCTGGTCGGCACTGGCGACTGGGGCGGTGGCGCTTTGGAGTAAGACGG
CTGATTTGACTGTGGACTTGGTGAAGGATATAACGAAGGAGGAGGAAGAA
CCCATGCGATTGTACAATAGGTCAGGAGGGGAGGGAGCGGGGAGAGGAGG
TTTGGTTATGGAGGGATTAGGAAGTAGAAGTGGAAGTAGTAGTAGCAGCA
GCAGCAGCAGTGGTGGTGGTGGATCGGGGATGGGGGGTCAGCAACAGCAT
CAGCAGAGCTCGATGTTGGGCATGGGGACTTCTTCACCTTTTGTCGGCCG
TGGAGGCGGGGGGGGTTGGGAGGGAGTGGAAACGTCTATGGCAAGAGCAG
TAGAGTGA
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Coding sequence (CDS) from alignment at chr2:409023..410630+

>NO02G01350.1 ID=NO02G01350.1|Name=NO02G01350.1|organism=Nannochloropsis oceanica|type=CDS|length=1233bp|location=Sequence derived from alignment at chr2:409023..410630+ (Nannochloropsis oceanica)
ATGCTTTCTGCTCCACCCACGCACTATCACACAGCCTTTCAGCAACAGCT
CCAGGACGATACGATGGCCCACTCGATGGATGCCGCAACGGAACGTCGCC
TGCGGGAGCTGCCAGGCAACAGGGTCTGCGCCGACTGCCCTGCCCCCAAT
CCCCAGTGGGCCAGCGTCTCTTATGGCTGCTTCATCTGCTTGGACTGCTC
TGGGCAACATCGTGCATTGGGCGTGCATCTATCGTTTGTCCGCTCTATTA
CCATGGATAGTTGGACCGACAAGCAAGTGAAGCTAATGGAGAACGGGGGG
AATGAAAAACTGGTTTCGTTCTTGCATCAGAGGGGGGTGGAGAAGAGTCT
GCCGATACACAAAAAGTACAATACTCCCGAAGCAGAATTGTATAGGGAGA
GGATGAAGGCTTTGGTTGAGGGGAGGGAGCTACCGACGGAGCTCCCGAAG
CGGGTACCTGCTCCTGTTCCTAGTGATGGAGAGGGGGGGGGGCAAGTGGG
TTCGGCCTTGGAACCTTTGCAGGGGGAGACAGAAGCGCAGTATGTGGCGC
GGCAGAGACAGTTGAACGAAGAGGCGAGGCAGAGGATGAAGGCCAAGTTT
GGCCCGGCGGGGTTGAGTGGCGGTGGAGGAGGAGGGAGAATGCAGGGGTT
TGGTAGTGATCCCAATTATGACCCTTCCAAGGGGGGGTTTGGTGGAGGCA
AGGGACAGGATATTGGCGGTGAGATTATGGGAGCTGTGGGAAAGCTAGGG
TTGACGGTGCAGGCGCATTTGCAGGAGGGGCAGTTGGGGCAAAAGCTGCA
GATGGGTTGGAGCAACGTGTCAAGTCGGGTCCAGGATCCGGAGCTGGCAG
CGAAGGTGAAGGAAAAGGCGAGCACGGGCTGGTCGGCACTGGCGACTGGG
GCGGTGGCGCTTTGGAGTAAGACGGCTGATTTGACTGTGGACTTGGTGAA
GGATATAACGAAGGAGGAGGAAGAACCCATGCGATTGTACAATAGGTCAG
GAGGGGAGGGAGCGGGGAGAGGAGGTTTGGTTATGGAGGGATTAGGAAGT
AGAAGTGGAAGTAGTAGTAGCAGCAGCAGCAGCAGTGGTGGTGGTGGATC
GGGGATGGGGGGTCAGCAACAGCATCAGCAGAGCTCGATGTTGGGCATGG
GGACTTCTTCACCTTTTGTCGGCCGTGGAGGCGGGGGGGGTTGGGAGGGA
GTGGAAACGTCTATGGCAAGAGCAGTAGAGTGA
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Synonyms
Publications