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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:402284..406078 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G01330.3 vs.
Match: EWM30467.1 (hypothetical protein Naga_100013g71 [Nannochloropsis gaditana]) HSP 1 Score: 417.9 bits (1073), Expect = 3.300e-113 Identity = 217/320 (67.81%), Postives = 246/320 (76.88%), Query Frame = 0
Query: 44 ITQETVTL-STGLPMEVLIAKPPSSISS---TIPPPFSAIFQPKTKSNNKPPLLFLHGSFHSSWCWSEHFLPFFSIRGHDCYAISFRGTSRSPSPSQESCITITTHAADLRAFLKSTFPPSSLP---PIVIGHSFGGAILMKLLEQQQPSSPPLLSGAAFFCSVPPSGNGPMTGRFLKRDLLLALKIVLGFVAKKAARWDWLCRELFFTPTLPPALLRRYRERLAQDSVVGIDVKDFLKELPSLKADEKTGKGRWVGQVPHRLVIGAEFDKLVDKEGVEEMAAFADAGAPVFLPLAHDVMLGPDWPIAAEALLAWIEGFD 357
+T ETVT +TGL MEVL AK SS SS I S+ F PK + K PL+F+HGSFHS+WCW+EHFLPFF+ RG+D YAIS RGT SPSP+QE+ ITI THAADLR FL+ FPPS PI+IGHSFGGAIL+KLLEQ PS L G AF CSVPPSGNGPMT RFLKRD +LALKIVLGFVAKK A WDWLC+ELFF+P+LPP LLR+Y++RL +DSVVGIDVKDFLKELP L+AD TG+GRWV +VP RLVIGAE DKLVDKEGVEE A F DA PVFLP AHD ML P+W +AA ALL W+ D
Sbjct: 71 VTAETVTFPNTGLSMEVLSAKSHSSSSSGPDNILAALSSFFWPKVR--RKQPLVFIHGSFHSAWCWAEHFLPFFAARGYDSYAISCRGTFPSPSPNQEASITINTHAADLRDFLRVAFPPSEQDTPQPILIGHSFGGAILLKLLEQPTPSP---LRGVAFLCSVPPSGNGPMTARFLKRDFILALKIVLGFVAKKGAEWDWLCQELFFSPSLPPDLLRKYKKRLKKDSVVGIDVKDFLKELPVLRADGATGQGRWVKEVPSRLVIGAERDKLVDKEGVEETARFVDAEPPVFLPTAHDAMLDPEWRLAANALLQWLNAMD 385
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G01330.3 ID=NO02G01330.3|Name=NO02G01330.3|organism=Nannochloropsis oceanica|type=mRNA|length=3651bp CCCTCCCTCCTCCTCCACTCGCAACACAGACTCCTCCACTCCAGCCAGCA TCTCACGGAAGCCGCGCTCGACAACAGCGCTTCGTGTGACTTTCGAAAGT TCTTGCGCCAGCGGATCGCTTTTAGGGGGTAAGCCCGCTGAGACATCAAG AGGGTAAGGGAGAAAGGGAGGGAGGGCTTGCAACCCTGCTGCTAGGCGGG GAAAGTGCGCGCAGTAGGTAGCACGGACGATGAGGAGTAAGAGCTCGTGT TGCTGAGGGTTAACAATATTCTTACCCCTTTTCATGCTTTTCTTGGAGGG TGGGCTGTCTCTTGCCCGTCCTCTTTCGCGACTTCCTACCTCCCCTGAGC CGGGGGGAGAGGATACCTGGTCATCCCAACCTCGTTTCCGAGATATACCA GCCTTGCTGCTCCTATTGCTACTACTGCTGCTGTTGTTGGCGGTGTTGTT GTCGATGATGACATCGTTCTTGATGGTATGGTTATTAGTGCTGTTGTTGT CACTGCCGTTGCGGATATAGGAACTGTTGCTGTTCATCTTATTGCTACCT GACCCATGACCTCCGCCATGTCCGTCAGTACCACCGCCTCGTTCTCTCTC CCTTCCTCTGCCTATGTTGAATCCCATTGTGGACAAAGCGCGCTCTTCTC GCTCACGAGATCGGCTTCTTCCTATTCTCTCTCCCCTTTCTCCCCCGCGT CCTATCTCCTCTCTCTCTTGGTGCACAGCGCCGTCATAATCCCTCACTCC ATACACACGTTGCCGCATGCCCTCCCCGGCCTCCCACCGCTGCTGCTGCT GCTGCTGCTGCTGCTGCTGCTCCTGCGAATAAGGAGCAGCTGCAGGAGGT CCGTAAGGACCCCGCAGGGGTGCGTACGCAGCGGGAAGGGGAGGGAGGGA GGAAGGGTTGAAAACAGATTGGGGGGGAAATGAAGACAGGCGTGATAGGA GTGGAGCCTGTGGCCAGTGCTGCCTACTCTCGTCATCGCGGATGCCAAAG TTTGGGTCTGGGGGGAAAGGCCCATGACCTCGAGGAGCAAAGCCTCCGTG CCCTTCATGTTGTTCTTGAGAGGGCGGGTCGTGCGGTCCTGAGGACCACG TTGGAGGTGGCAGCCGCAGATAAGCACTACCATCACTATAACCGCCATGA GCGTGGGGGGAATCAAGGACCTGAGTAGAGGAGGGATGGAATGGACGACC GTAGTGGTTTGTGGAGGGGTTTGTGGGGGAGCCGCGGGGGGGAGAAAAGG GGGATTGGGTGAATGGCTGTTGTGGCTCATGTCGTTGCTGATGGGGCAAG AGATCTCTTCCTATTTTTCCTATTACTCCTCCACCTCTTCTTCCACGTGG TCCTGGTCCCCCACCTCTTACAGCTCCTCCTCCCCGCCTTCCCCCTCTTC CTCCTCCCCCATTGGGGCCGGAGGCCATCTGTCCATCGTACACGTCCGCC AGCATCTGCTGGCTGATCACCCAATGCGGCTGCGAGGTCCGCAACAAGTG CGAGACTTCGTTCTGGAAAGCGCCAATTTAGGTGAGGAGGAAGGGAGGGA GGGAGGGATTAAAGTCAGTCAAAAAGTTGTGTACGATCGTCACGGTCTTG CCTCGTGCACGGACACAAAACGAAATACCCACCATGGTCAAACTCCCTCT GTGCATCATCACCGCAACCGCGTTGTTCAGCACGTCAAACGGTGGGTGAG AGGCTCGAGTGCTACCTTCAGCACTACGGAGGCCTGGTTGGCGTGGACGT GACATGGGAAAGAAAGGCAGGGGGCAGCCTATTTTCCCTTGTGTGCCACG CACTGCCTGTAATAGGGAGAAGAGGCGGTCAAACAAGCCCTTGGTTTGAC AACAAAGAAGAATGATGCATTTCCCGGTGCATGTGATGCGTAACCGAGTG GTGCTGCGCTTTGGTGGCGTGTGCGTTGGGAAGTTTGGTGCTTCCATGGG TCCCCCGGGCCTCGTGCGTCCAGCCTTCTGATCGACTGAGTGTCGCGTCT CTTGCATCATCGAAACCCGCTAGCCCCCTTTCACGCCCTTTCCCCGTGCA CAAACACAGGCACCTCCAGGGCCACGACCATGACGAGCACGATGACAGCG GCAAGAGACGTGACGAAAAGGAGAAGGGGCTGTCATACCAGCAGCAGAAG CCACAGCATCACGTTAGTGCTTCTTGTGGGGTGGGGAGGTCGTAGGGAAG ACATGGGGAACCCTCACCCAACACACTTATTGGTTATCGACGGGGCTGAC CTGCATTGTAACGTGAACTTTATAATCATTCAGCTATCTCCTCACGACAG CCTATCCGCAACATACTACTCGACAGCCTACTGTTTCCCCTCTGCCTCCT AATGACCACCGACGCATTCCAACTCCGTAGTCCATCACCTAACTCAACGC CACGAAGAAGCCAACTCTTGTCCATGTCTTCCCCTTCCTCCACCAACTCC CGTACCACAGCCACAATCTCCTCCGTGATTATCACACAAGAAACTGTGAC ACTTAGTACTGGCCTCCCAATGGAAGTCCTCATCGCCAAGCCCCCTTCTT CCATTTCCTCCACCATCCCTCCACCTTTCTCCGCCATTTTCCAACCCAAA ACAAAGTCCAATAACAAGCCCCCCTTGCTTTTCCTACATGGCTCCTTTCA CTCATCCTGGTGCTGGTCCGAGCACTTCCTTCCTTTCTTCTCAATTCGAG GTCACGACTGCTACGCTATATCTTTCCGAGGCACCTCCCGCTCCCCCTCG CCTTCCCAAGAATCCTGCATCACCATCACTACCCACGCCGCCGATCTCCG CGCCTTCCTCAAAAGCACATTCCCTCCCTCATCTCTTCCCCCCATCGTGA TCGGCCACTCCTTTGGTGGCGCCATCCTCATGAAACTCCTCGAGCAGCAA CAACCATCATCACCCCCTCTCCTTTCCGGCGCCGCCTTCTTCTGCTCCGT CCCCCCATCGGGAAATGGTCCCATGACCGGACGCTTCCTGAAACGAGATT TACTCCTCGCCCTCAAAATTGTTCTCGGCTTTGTGGCTAAAAAAGCTGCT CGATGGGACTGGCTTTGTCGCGAGCTCTTCTTCACGCCTACCCTCCCTCC GGCATTGCTTCGTCGGTATAGGGAGAGGTTAGCACAGGACTCAGTCGTAG GAATTGATGTGAAGGATTTTTTGAAGGAGTTGCCGTCGTTGAAAGCGGAC GAAAAGACGGGGAAAGGACGTTGGGTGGGACAAGTTCCGCATCGCCTGGT TATTGGCGCCGAGTTTGACAAGCTCGTCGACAAAGAAGGAGTGGAAGAGA TGGCGGCATTTGCCGACGCGGGGGCACCCGTGTTTTTGCCGTTGGCACAC GACGTAATGCTGGGACCCGACTGGCCGATTGCGGCCGAGGCGCTGTTGGC ATGGATCGAGGGTTTCGACTGCAGCCCTGCTAAGGAGGTGTCGCAAAGGC AGGAGGGCGAGGGAAGAAAAAAATGAAGAAAGAAGTGATTCTGGCCTTTT TGAGGGGTTTTCTCAAAGTTTCGGTCGAGGGACTCTCCCATCTTCCTCTT TTTTTACCCAGGTTAAGGATGTTGGAAACAAGCTTATCAATATTCCGAAA TCAAATAGATGAAAAACAAACGTTTGAAAAACTTTCCAGCTGTCTTCTCG C back to topprotein sequence of NO02G01330.3 >NO02G01330.3-protein ID=NO02G01330.3-protein|Name=NO02G01330.3|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp MTTDAFQLRSPSPNSTPRRSQLLSMSSPSSTNSRTTATISSVIITQETVT LSTGLPMEVLIAKPPSSISSTIPPPFSAIFQPKTKSNNKPPLLFLHGSFH SSWCWSEHFLPFFSIRGHDCYAISFRGTSRSPSPSQESCITITTHAADLR AFLKSTFPPSSLPPIVIGHSFGGAILMKLLEQQQPSSPPLLSGAAFFCSV PPSGNGPMTGRFLKRDLLLALKIVLGFVAKKAARWDWLCRELFFTPTLPP ALLRRYRERLAQDSVVGIDVKDFLKELPSLKADEKTGKGRWVGQVPHRLV IGAEFDKLVDKEGVEEMAAFADAGAPVFLPLAHDVMLGPDWPIAAEALLA WIEGFDCSPAKEVSQRQEGEGRKK* back to topmRNA from alignment at chr2:402284..406078- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G01330.3 ID=NO02G01330.3|Name=NO02G01330.3|organism=Nannochloropsis oceanica|type=mRNA|length=3795bp|location=Sequence derived from alignment at chr2:402284..406078- (Nannochloropsis oceanica) CCCTCCCTCCTCCTCCACTCGCAACACAGACTCCTCCACTCCAGCCAGCA
TCTCACGGAAGCCGCGCTCGACAACAGCGCTTCGTGTGACTTTCGAAAGT
TCTTGCGCCAGCGGATCGCTTTTAGGGGGTAAGCCCGCTGAGACATCAAG
AGGGTAAGGGAGAAAGGGAGGGAGGGCTTGCAACCCTGCTGCTAGGCGGG
GAAAGTGCGCGCAGTAGGTAGCACGGACGATGAGGAGTAAGAGCTCGTGT
TGCTGAGGGTTAACAATATTCTTACCCCTTTTCATGCTTTTCTTGGAGGG
TGGGCTGTCTCTTGCCCGTCCTCTTTCGCGACTTCCTACCTCCCCTGAGC
CGGGGGGAGAGGATACCTGGTCATCCCAACCTCGTTTCCGAGATATACCA
GCCTTGCTGCTCCTATTGCTACTACTGCTGCTGTTGTTGGCGGTGTTGTT
GTCGATGATGACATCGTTCTTGATGGTATGGTTATTAGTGCTGTTGTTGT
CACTGCCGTTGCGGATATAGGAACTGTTGCTGTTCATCTTATTGCTACCT
GACCCATGACCTCCGCCATGTCCGTCAGTACCACCGCCTCGTTCTCTCTC
CCTTCCTCTGCCTATGTTGAATCCCATTGTGGACAAAGCGCGCTCTTCTC
GCTCACGAGATCGGCTTCTTCCTATTCTCTCTCCCCTTTCTCCCCCGCGT
CCTATCTCCTCTCTCTCTTGGTGCACAGCGCCGTCATAATCCCTCACTCC
ATACACACGTTGCCGCATGCCCTCCCCGGCCTCCCACCGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTCCTGCGAATAAGGAGCAGCTGCAGGAGGT
CCGTAAGGACCCCGCAGGGGTGCGTACGCAGCGGGAAGGGGAGGGAGGGA
GGAAGGGTTGAAAACAGATTGGGGGGGAAATGAAGACAGGCGTGATAGGA
GTGGAGCCTGTGGCCAGTGCTGCCTACTCTCGTCATCGCGGATGCCAAAG
TTTGGGTCTGGGGGGAAAGGCCCATGACCTCGAGGAGCAAAGCCTCCGTG
CCCTTCATGTTGTTCTTGAGAGGGCGGGTCGTGCGGTCCTGAGGACCACG
TTGGAGGTGGCAGCCGCAGATAAGCACTACCATCACTATAACCGCCATGA
GCGTGGGGGGAATCAAGGACCTGAGTAGAGGAGGGATGGAATGGACGACC
GTAGTGGTTTGTGGAGGGGTTTGTGGGGGAGCCGCGGGGGGGAGAAAAGG
GGGATTGGGTGAATGGCTGTTGTGGCTCATGTCGTTGCTGATGGGGCAAG
AGATCTCTTCCTATTTTTCCTATTACTCCTCCACCTCTTCTTCCACGTGG
TCCTGGTCCCCCACCTCTTACAGCTCCTCCTCCCCGCCTTCCCCCTCTTC
CTCCTCCCCCATTGGGGCCGGAGGCCATCTGTCCATCGTACACGTCCGCC
AGCATCTGCTGGCTGATCACCCAATGCGGCTGCGAGGTCCGCAACAAGTG
CGAGACTTCGTTCTGGAAAGCGCCAATTTAGGTGAGGAGGAAGGGAGGGA
GGGAGGGATTAAAGTCAGTCAAAAAGTTGTGTACGATCGTCACGGTCTTG
CCTCGTGCACGGACACAAAACGAAATACCCACCATGGTCAAACTCCCTCT
GTGCATCATCACCGCAACCGCGTTGTTCAGCACGTCAAACGGTGGGTGAG
AGGCTCGAGTGCTACCTTCAGCACTACGGAGGCCTGGTTGGCGTGGACGT
GACATGGGAAAGAAAGGCAGGGGGCAGCCTATTTTCCCTTGTGTGCCACG
CACTGCCTGTAATAGGGAGAAGAGGCGGTCAAACAAGCCCTTGGTTTGAC
AACAAAGAAGAATGATGCATTTCCCGGTGCATGTGATGCGTAACCGAGTG
GTGCTGCGCTTTGGTGGCGTGTGCGTTGGGAAGTTTGGTGCTTCCATGGG
TCCCCCGGGCCTCGTGCGTCCAGCCTTCTGATCGACTGAGTGTCGCGTCT
CTTGCATCATCGAAACCCGCTAGCCCCCTTTCACGCCCTTTCCCCGTGCA
CAAACACAGGCACCTCCAGGGCCACGACCATGACGAGCACGATGACAGCG
GCAAGAGACGTGACGAAAAGGAGAAGGGGCTGTCATACCAGCAGCAGAAG
CCACAGCATCACGTTAGTGCTTCTTGTGGGGTGGGGAGGTCGTAGGGAAG
ACATGGGGAACCCTCACCCAACACACTTATTGGTTATCGACGGGGCTGAC
CTGCATTGTAACGTGAACTTTATAATCATTCAGCTATCTCCTCACGACAG
CCTATCCGCAACATACTACTCGACAGCCTACTGTTTCCCCTCTGCCTCCT
AATGACCACCGACGCATTCCAACTCCGTAGTCCATCACCTAACTCAACGC
CACGAAGAAGCCAACTCTTGTCCATGTCTTCCCCTTCCTCCACCAACTCC
CGTACCACAGCCACAATCTCCTCCGTGATTATCACACAAGAAACTGTGAC
ACTTAGTACTGGCCTCCCAATGGAAGTCCTCATCGCCAAGCCCCCTTCTT
CCATTTCCTCCACCATCCCTCCACCTTTCTCCGCCATTTTCCAACCCAAA
ACAAAGTCCAATAACAAGCCCCCCTTGCTTTTCCTACATGGCTCCTTTCA
CTCATCCTGGTGCTGGTCCGAGCACTTCCTTCCTTTCTTCTCAATTCGAG
GTCACGACTGCTACGCTATATCTTTCCGAGGCACCTCCCGCTCCCCCTCG
CCTTCCCAAGAATCCTGCATCACCATCACTACCCACGCCGCCGATCTCCG
CGCCTTCCTCAAAAGCACATTCCCTCCCTCATCTCTTCCCCCCATCGTGA
TCGGCCACTCCTTTGGTGGCGCCATCCTCATGAAACTCCTCGAGCAGCAA
CAACCATCATCACCCCCTCTCCTTTCCGGCGCCGCCTTCTTCTGCTCCGT
CCCCCCATCGGGAAATGGTCCCATGACCGGACGCTTCCTGAAACGAGATT
TACTCCTCGCCCTCAAAATTGTTCTCGGCTTTGTGGCTAAAAAAGCTGCT
CGATGGGACTGGCTTTGTCGCGAGCTCTTCTTCACGCCTACCCTCCCTCC
GGCATTGCTTCGTCGGTATAGGGAGAGGTTAGCACAGGACTCAGTCGTAG
GAATTGATGTGAAGGATTTTTTGAAGGAGTTGCCGTCGTTGAAAGCGGAC
GAAAAGACGGGGAAAGGACGTTGGGTGGGACAAGTTCCGCATCGCCTGGT
TATTGGTAAGAGGCAAGGGGGGAAGAGAGGACAATAAGGGAGGGGAGGAG
TTCAGAGAAGGGGAAGGAAGGAGTCGCATTGAAATATGTGCTCACTGTCA
TTAAGGACCTGAATTTATTTCTCTCACCTTCCACCTCTCCACAATATAGG
CGCCGAGTTTGACAAGCTCGTCGACAAAGAAGGAGTGGAAGAGATGGCGG
CATTTGCCGACGCGGGGGCACCCGTGTTTTTGCCGTTGGCACACGACGTA
ATGCTGGGACCCGACTGGCCGATTGCGGCCGAGGCGCTGTTGGCATGGAT
CGAGGGTTTCGACTGCAGCCCTGCTAAGGAGGTGTCGCAAAGGCAGGAGG
GCGAGGGAAGAAAAAAATGAAGAAAGAAGTGATTCTGGCCTTTTTGAGGG
GTTTTCTCAAAGTTTCGGTCGAGGGACTCTCCCATCTTCCTCTTTTTTTA
CCCAGGTTAAGGATGTTGGAAACAAGCTTATCAATATTCCGAAATCAAAT
AGATGAAAAACAAACGTTTGAAAAACTTTCCAGCTGTCTTCTCGC back to topCoding sequence (CDS) from alignment at chr2:402284..406078- >NO02G01330.3 ID=NO02G01330.3|Name=NO02G01330.3|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr2:402284..406078- (Nannochloropsis oceanica) ATGACCACCGACGCATTCCAACTCCGTAGTCCATCACCTAACTCAACGCC ACGAAGAAGCCAACTCTTGTCCATGTCTTCCCCTTCCTCCACCAACTCCC GTACCACAGCCACAATCTCCTCCGTGATTATCACACAAGAAACTGTGACA CTTAGTACTGGCCTCCCAATGGAAGTCCTCATCGCCAAGCCCCCTTCTTC CATTTCCTCCACCATCCCTCCACCTTTCTCCGCCATTTTCCAACCCAAAA CAAAGTCCAATAACAAGCCCCCCTTGCTTTTCCTACATGGCTCCTTTCAC TCATCCTGGTGCTGGTCCGAGCACTTCCTTCCTTTCTTCTCAATTCGAGG TCACGACTGCTACGCTATATCTTTCCGAGGCACCTCCCGCTCCCCCTCGC CTTCCCAAGAATCCTGCATCACCATCACTACCCACGCCGCCGATCTCCGC GCCTTCCTCAAAAGCACATTCCCTCCCTCATCTCTTCCCCCCATCGTGAT CGGCCACTCCTTTGGTGGCGCCATCCTCATGAAACTCCTCGAGCAGCAAC AACCATCATCACCCCCTCTCCTTTCCGGCGCCGCCTTCTTCTGCTCCGTC CCCCCATCGGGAAATGGTCCCATGACCGGACGCTTCCTGAAACGAGATTT ACTCCTCGCCCTCAAAATTGTTCTCGGCTTTGTGGCTAAAAAAGCTGCTC GATGGGACTGGCTTTGTCGCGAGCTCTTCTTCACGCCTACCCTCCCTCCG GCATTGCTTCGTCGGTATAGGGAGAGGTTAGCACAGGACTCAGTCGTAGG AATTGATGTGAAGGATTTTTTGAAGGAGTTGCCGTCGTTGAAAGCGGACG AAAAGACGGGGAAAGGACGTTGGGTGGGACAAGTTCCGCATCGCCTGGTT ATTGGCGCCGAGTTTGACAAGCTCGTCGACAAAGAAGGAGTGGAAGAGAT GGCGGCATTTGCCGACGCGGGGGCACCCGTGTTTTTGCCGTTGGCACACG ACGTAATGCTGGGACCCGACTGGCCGATTGCGGCCGAGGCGCTGTTGGCA TGGATCGAGGGTTTCGACTGCAGCCCTGCTAAGGAGGTGTCGCAAAGGCA GGAGGGCGAGGGAAGAAAAAAATGA back to top
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