NO02G01310.1, NO02G01310.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G01310.1
Unique Name	NO02G01310.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2769
Alignment location	chr2:391996..394896 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:391996..394896 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO02G01310.1 vs.

BLAST of NO02G01310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G01310	NO02G01310	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G01310.1	NO02G01310.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G01310.1.cds1	NO02G01310.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G01310.1.cds2	NO02G01310.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:391996..394896+
coding sequence from alignment at chr2:391996..394896+

mRNA sequence

>NO02G01310.1 ID=NO02G01310.1|Name=NO02G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2769bp
ATGGCGACGCCCCTCCCTGCATCTCAGCCTCCTGCATCCTCTCCACCGGC
CATGCATTGGTGCAGCGGCTGTGCGGCCACGAAAGAGACCCGAACGCTGG
CCTGCGCCAAGTGCAAAGCCGCCTGGTTCTGCTCCAAGGATTGCCAGACC
ACGGCGTGGAAGGCTGGGCACAAAGAAGCCTGCAAGTCGACATTGCTCTA
CAACCGCAAAGCATACCCGCCCGAACTACTCAGTAAAGCCCCCCTCGACG
TAATCGACAAATGGGTCACCCACGTCGCTTCTCTTCCTCATTTTACAAGC
CCTGTCGATATTTTGCATCGACGAGCAGCGTTGCAGATGCTGTTGGCGTG
CCTTGTTATCCTCCCTCCAGACGCGCCCGGCCGTTTGGGTCTGTTGCCAG
GCTTCGCGCGTATTTTGCAGGAGAGAAAGCAGCGAGAAGGCAGGAGCAGC
AGCCACGGCAGCAGGGATGATGGGAAGGATGAAGATTTGTGTAAATTGAC
CCTGAAAATCTTGGTCGTGTGCCTACAGCAGGATAAATTAAATGCTTCCC
TCTTTTACCTCTGCGGAGGTACGCAAGCCCTTGCCGATTTAGTGTTTCTC
GACCGTTCCTCTTCTTCTTCCTCAACTGCATCTCCTTCAGACGAATGGAC
ACCGGTAGGGGAACGGCAAGTCCTTGCCTTGTCGGCGTTGGTGCATGCCT
TAATGGAGCCCAACGACTTCGTGCTGGTCGGTAACACCTTGGGGGTATAT
CCCGCGACCGAGGTGCTTGTTCCTGTCTTGCTACATTTGATGGACCCCTG
TGTGCCAAAGGCAGAGGAAGAGGAAGACAGGGAGGAGGTGTGGAAAGCCC
GGCTAAGGCAACACCAGGATGCAACCAATTTATTGACGCTGTGTATTAAT
TTGAAGACGGAGGTGCCCTTGCAATTGTGGCAGGAAGGGTTTCGTATCCT
TAAGGAGCTCACTCGATTTTACCTTGAGCCTCGACCCAGTAGTACTAGCA
AAAAAAAATGTTGTTGTAGCAGTAGTAGTGGTTGTTGTAGTTGTAGTTGT
AGTCGTAGTAGTAGTAGCAGCAACACCAGCAGCGGCACCAGCAGCAGTGG
CAGTGGTAGTACCAGCAATAGCAGCAGCAGCAGCAGCAGCTGCAACAGCG
ACAAGAAAAGTCTAGGTGAACTCATCATGGAGAATGCCCGCCTTTCCCTC
TTGTCGTCGAGCAGCAGCGCCACGCAAGCCCAAGATGAATCCTCCTCCTT
CTCCTCGTCCTCCTCTTCAGCCCAGAGTCTTAGCGTGCATCTCCGATGGT
TGCTACTTGATATCAACGCGCTACTTTCCGGTTTTGTCGATCACTTCCCC
CAAGCCGTCCATCTCGTTCTCCCCCTCGGCCTCCCTACCCTCTTAGGCCT
GCACCTCTCTTTCAGTGCCGATGAAAGCGTGCAGCAGACCGCGTTGCTCA
TCACGAGGCATTGTCTCAAGGGCACGAGTTCTCTCCATGACTTCAACGAC
ATCGTGGGTGCGAATGAATCGAAAATATTCGGTGAAACGGTAAAGACGAT
AAAAAAGGCAGTGGCGGCCTTGCTAGAGATGGGGGCAGACGCCCGCATTG
AGACCAAGAAGAAGAAAAAGAGGAAGGAGAAGGGAAGGAAGAAGGCGGCA
GATGAGGAAGAGAAGGAGAAAGAGATCCAGGTAGCTTTATTAAAGGGAGG
CTTATCCCTCAGCGCGGAATGCCTGAAAGCGAATCCTTCCCTTCTCCAAG
CCTACCTTCCTAACCTCTTCCTCGTCCTTCGCCTCGTCCTCACCAACTGC
TGCCCAGAAGAAAAGGGAGAGAGGGAGAGAGAGGAGGTCGAACAATCGCA
CATTCTTTCTGCAGCCTTGAATGAAGCCTTGGCCTGCGTCCTCAATGCCC
TCCTCTACCTCCCTTCTGACGCACTCGATTCCCTCCTAGGTTGCAACGAC
AGTGACAGCAGCAGCAGAAGCAGCAGAAGCAGCAGAAGCGGGAATGCATG
GCTGCTGGCGTCTCTACATCGCCTGTTGAACAAACACAAGCATGACCGTC
CCCCAAGTGTGGCCTCCGTGATTTGTAATATATATGCCGTCCTGGCAGGG
TGCAGCAGCAGCGGCGGCGGCAGCGGCGATAAAGTCAAGGCTGAAGAGGT
TGAGGACCAGAAGAACGACATCCCTCTATTGCTCACCCGCTTCTTCCTGG
ACGAGAAGGTCCAGGACCACGCACTCATTAAAGAGGCTATATTCGCTTTG
CAAGAGTTTGTTTGGGCATGTCCTCAAATGGTACTCCCACAGCTTCGTGC
CATGCCTGACGCGGCTGCACTCCAGACACGGCTGGGAAATCTGGTTGAAT
CTGGGGCGGTGGAATGCGAGTATTTGGCGCGAGTGCTGAAGGGAGGTGAG
GGGGGAGAGGATGATGAGAAGCTACTGGGCACCACGCCGATCAAAACGGG
GGACTGGATGGATCATGGGGGTTTGGGGCGGAGTGTGGTGAAGACCATGA
TGCACGACCGCCTCGAACAATTTCTGCTTGCCCGAAATGAAATTAATTGC
GGGGCGAGCGGTCGCCCCCTGGCTGAAGGAGATCGGATCATGCGCCTCAC
GAAATGCCAGCATTGGTTTCTGGAAGGAGAGCTGCGCAAGGTCGTTTTGG
GGGAAGACAACGAGGCTGTGGAAGAGGGGGGGGTATTATCTAGGTATTGG
AAGGAGGACCGCACGGAGACTTTGTGTCCCGTTTGTGGGCGGCACATGCG
TGTGGAAATTCGTGACTAG

protein sequence of NO02G01310.1

>NO02G01310.1-protein ID=NO02G01310.1-protein|Name=NO02G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=923bp
MATPLPASQPPASSPPAMHWCSGCAATKETRTLACAKCKAAWFCSKDCQT
TAWKAGHKEACKSTLLYNRKAYPPELLSKAPLDVIDKWVTHVASLPHFTS
PVDILHRRAALQMLLACLVILPPDAPGRLGLLPGFARILQERKQREGRSS
SHGSRDDGKDEDLCKLTLKILVVCLQQDKLNASLFYLCGGTQALADLVFL
DRSSSSSSTASPSDEWTPVGERQVLALSALVHALMEPNDFVLVGNTLGVY
PATEVLVPVLLHLMDPCVPKAEEEEDREEVWKARLRQHQDATNLLTLCIN
LKTEVPLQLWQEGFRILKELTRFYLEPRPSSTSKKKCCCSSSSGCCSCSC
SRSSSSSNTSSGTSSSGSGSTSNSSSSSSSCNSDKKSLGELIMENARLSL
LSSSSSATQAQDESSSFSSSSSSAQSLSVHLRWLLLDINALLSGFVDHFP
QAVHLVLPLGLPTLLGLHLSFSADESVQQTALLITRHCLKGTSSLHDFND
IVGANESKIFGETVKTIKKAVAALLEMGADARIETKKKKKRKEKGRKKAA
DEEEKEKEIQVALLKGGLSLSAECLKANPSLLQAYLPNLFLVLRLVLTNC
CPEEKGEREREEVEQSHILSAALNEALACVLNALLYLPSDALDSLLGCND
SDSSSRSSRSSRSGNAWLLASLHRLLNKHKHDRPPSVASVICNIYAVLAG
CSSSGGGSGDKVKAEEVEDQKNDIPLLLTRFFLDEKVQDHALIKEAIFAL
QEFVWACPQMVLPQLRAMPDAAALQTRLGNLVESGAVECEYLARVLKGGE
GGEDDEKLLGTTPIKTGDWMDHGGLGRSVVKTMMHDRLEQFLLARNEINC
GASGRPLAEGDRIMRLTKCQHWFLEGELRKVVLGEDNEAVEEGGVLSRYW
KEDRTETLCPVCGRHMRVEIRD*

mRNA from alignment at chr2:391996..394896+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G01310.1 ID=NO02G01310.1|Name=NO02G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2901bp|location=Sequence derived from alignment at chr2:391996..394896+ (Nannochloropsis oceanica)
ATGGCGACGCCCCTCCCTGCATCTCAGCCTCCTGCATCCTCTCCACCGGC
CATGCATTGGTGCAGCGGCTGTGCGGCCACGAAAGAGACCCGAACGCTGG
CCTGCGCCAAGTGCAAAGCCGCCTGGTTCTGCTCCAAGGATTGCCAGACC
ACGGCGTGGAAGGCTGGGCACAAAGAAGCCTGCAAGTCGACATTGCTCTA
CAACCGCAAAGCATACCCGCCCGAACTACTCAGTAAAGCCCCCCTCGACG
TAATCGACAAATGGGTCACCCACGTCGCTTCTCTTCCTCATTTTACAAGC
CCTGTCGATATTTTGCATCGACGAGCAGCGTTGCAGATGCTGTTGGCGTG
CCTTGTTATCCTCCCTCCAGACGCGCCCGGCCGTTTGGGTCTGTTGCCAG
GCTTCGCGCGTATTTTGCAGGAGAGAAAGCAGCGAGAAGGCAGGAGCAGC
AGCCACGGCAGCAGGGATGATGGGAAGGATGAAGATTTGTGTAAATTGAC
CCTGAAAATCTTGGTCGTGTGCCTACAGCAGGATAAATTAAATGCTTCCC
TCTTTTACCTCTGCGGAGGTACGCAAGCCCTTGCCGATTTAGTGTTTCTC
GACCGTTCCTCTTCTTCTTCCTCAACTGCATCTCCTTCAGACGAATGGAC
ACCGGTAGGGGAACGGCAAGTCCTTGCCTTGTCGGCGTTGGTGCATGCCT
TAATGGAGCCCAACGACTTCGTGCTGGTCGGTAACACCTTGGGGGTATAT
CCCGCGACCGAGGTGCTTGTTCCTGTCTTGCTACATTTGATGGACCCCTG
TGTGCCAAAGGCAGAGGAAGAGGAAGACAGGGAGGAGGTGTGGAAAGCCC
GGCTAAGGCAACACCAGGATGCAACCAATTTATTGACGCTGTGTATTAAT
TTGAAGACGGAGGTGCCCTTGCAATTGTGGCAGGAAGGGTTTCGTATCCT
TAAGGAGCTCACTCGATTTTACCTTGAGCCTCGACCCAGTAGTACTAGCA
AAAAAAAATGTTGTTGTAGCAGTAGTAGTGGTTGTTGTAGTTGTAGTTGT
AGTCGTAGTAGTAGTAGCAGCAACACCAGCAGCGGCACCAGCAGCAGTGG
CAGTGGTAGTACCAGCAATAGCAGCAGCAGCAGCAGCAGCTGCAACAGCG
ACAAGAAAAGTCTAGGTGAACTCATCATGGAGAATGCCCGCCTTTCCCTC
TTGTCGTCGAGCAGCAGCGCCACGCAAGCCCAAGATGAATCCTCCTCCTT
CTCCTCGTCCTCCTCTTCAGCCCAGAGTCTTAGCGTGCATCTCCGATGGT
TGCTACTTGATATCAACGCGCTACTTTCCGGTTTTGTCGATCACTTCCCC
CAAGCCGTCCATCTCGTTCTCCCCCTCGGCCTCCCTACCCTCTTAGGCCT
GCACCTCTCTTTCAGTGCCGATGAAAGCGTGCAGCAGACCGCGTTGCTCA
TCACGAGGCATTGTCTCAAGGGCACGAGTTCTCTCCATGACTTCAACGAC
ATCGTGGGTGCGAATGAATCGAAAATATTCGGTGAAACGGTAAAGACGAT
AAAAAAGGCAGTGGCGGCCTTGCTAGAGATGGGGGCAGACGCCCGCATTG
AGACCAAGAAGAAGAAAAAGAGGAAGGAGAAGGGAAGGAAGAAGGCGGCA
GATGAGGAAGAGAAGGAGAAAGAGATCCAGGTAGCTTTATTAAAGGGAGG
CTTATCCCTCAGCGCGGAATGCCTGAAAGCGAATCCTTCCCTTCTCCAAG
CCTACCTTCCTAACCTCTTCCTCGTCCTTCGCCTCGTCCTCACCAACTGC
TGCCCAGAAGAAAAGGGAGAGAGGGAGAGAGAGGAGGTCGAACAATCGCA
CATTCTTTCTGCAGCCTTGAATGAAGCCTTGGCCTGCGTCCTCAATGCCC
TCCTCTACCTCCCTTCTGACGCACTCGATTCCCTCCTAGGTTGCAACGAC
AGTGACAGCAGCAGCAGAAGCAGCAGAAGCAGCAGAAGCGGGAATGCATG
GCTGCTGGCGTCTCTACATCGCCTGTTGAACAAACACAAGCATGACCGTC
CCCCAAGTGTGGCCTCCGTGATTTGTAATATATATGCCGTCCTGGCAGGG
TGCAGCAGCAGCGGCGGCGGCAGCGGCGATAAAGTCAAGGCTGAAGAGGT
TGAGGACCAGAAGAACGACATCCCTCTATTGCTCACCCGCTTCTTCCTGG
ACGAGAAGGTCCAGGACCACGCACTCATTAAAGAGGCTATATTCGCTTTG
CAAGAGTTTGTTTGGGCATGTCCTCAAATGGTACTCCCACAGCTTCGTGC
CATGCCTGACGCGGCTGCACTCCAGACACGGCTGGGAAATCTGGTTGAAT
CTGGGGCGGTGGAATGCGAGTATTTGGCGCGAGTGCTGAAGGGAGGTGAG
GGGGGAGAGGATGATGAGAAGCTACTGGGCACCACGCCGATCAAAACGGG
GGACTGGATGGATCATGGGGGTTTGGGGCGGAGTGTGGTGAAGGTACGTC
TCTTATTAAAAGTTGAGGCGTTCTTTCCTTCTCGCTTTCCTCAATACCTC
ATCGCCCCTTCTCGTCTCATCCACTTTTACCCCTCCCTCAATCCCTCCCT
CCTTTGCGTTTCAATGTACACACAGACCATGATGCACGACCGCCTCGAAC
AATTTCTGCTTGCCCGAAATGAAATTAATTGCGGGGCGAGCGGTCGCCCC
CTGGCTGAAGGAGATCGGATCATGCGCCTCACGAAATGCCAGCATTGGTT
TCTGGAAGGAGAGCTGCGCAAGGTCGTTTTGGGGGAAGACAACGAGGCTG
TGGAAGAGGGGGGGGTATTATCTAGGTATTGGAAGGAGGACCGCACGGAG
ACTTTGTGTCCCGTTTGTGGGCGGCACATGCGTGTGGAAATTCGTGACTA
G

Coding sequence (CDS) from alignment at chr2:391996..394896+

>NO02G01310.1 ID=NO02G01310.1|Name=NO02G01310.1|organism=Nannochloropsis oceanica|type=CDS|length=2769bp|location=Sequence derived from alignment at chr2:391996..394896+ (Nannochloropsis oceanica)
ATGGCGACGCCCCTCCCTGCATCTCAGCCTCCTGCATCCTCTCCACCGGC
CATGCATTGGTGCAGCGGCTGTGCGGCCACGAAAGAGACCCGAACGCTGG
CCTGCGCCAAGTGCAAAGCCGCCTGGTTCTGCTCCAAGGATTGCCAGACC
ACGGCGTGGAAGGCTGGGCACAAAGAAGCCTGCAAGTCGACATTGCTCTA
CAACCGCAAAGCATACCCGCCCGAACTACTCAGTAAAGCCCCCCTCGACG
TAATCGACAAATGGGTCACCCACGTCGCTTCTCTTCCTCATTTTACAAGC
CCTGTCGATATTTTGCATCGACGAGCAGCGTTGCAGATGCTGTTGGCGTG
CCTTGTTATCCTCCCTCCAGACGCGCCCGGCCGTTTGGGTCTGTTGCCAG
GCTTCGCGCGTATTTTGCAGGAGAGAAAGCAGCGAGAAGGCAGGAGCAGC
AGCCACGGCAGCAGGGATGATGGGAAGGATGAAGATTTGTGTAAATTGAC
CCTGAAAATCTTGGTCGTGTGCCTACAGCAGGATAAATTAAATGCTTCCC
TCTTTTACCTCTGCGGAGGTACGCAAGCCCTTGCCGATTTAGTGTTTCTC
GACCGTTCCTCTTCTTCTTCCTCAACTGCATCTCCTTCAGACGAATGGAC
ACCGGTAGGGGAACGGCAAGTCCTTGCCTTGTCGGCGTTGGTGCATGCCT
TAATGGAGCCCAACGACTTCGTGCTGGTCGGTAACACCTTGGGGGTATAT
CCCGCGACCGAGGTGCTTGTTCCTGTCTTGCTACATTTGATGGACCCCTG
TGTGCCAAAGGCAGAGGAAGAGGAAGACAGGGAGGAGGTGTGGAAAGCCC
GGCTAAGGCAACACCAGGATGCAACCAATTTATTGACGCTGTGTATTAAT
TTGAAGACGGAGGTGCCCTTGCAATTGTGGCAGGAAGGGTTTCGTATCCT
TAAGGAGCTCACTCGATTTTACCTTGAGCCTCGACCCAGTAGTACTAGCA
AAAAAAAATGTTGTTGTAGCAGTAGTAGTGGTTGTTGTAGTTGTAGTTGT
AGTCGTAGTAGTAGTAGCAGCAACACCAGCAGCGGCACCAGCAGCAGTGG
CAGTGGTAGTACCAGCAATAGCAGCAGCAGCAGCAGCAGCTGCAACAGCG
ACAAGAAAAGTCTAGGTGAACTCATCATGGAGAATGCCCGCCTTTCCCTC
TTGTCGTCGAGCAGCAGCGCCACGCAAGCCCAAGATGAATCCTCCTCCTT
CTCCTCGTCCTCCTCTTCAGCCCAGAGTCTTAGCGTGCATCTCCGATGGT
TGCTACTTGATATCAACGCGCTACTTTCCGGTTTTGTCGATCACTTCCCC
CAAGCCGTCCATCTCGTTCTCCCCCTCGGCCTCCCTACCCTCTTAGGCCT
GCACCTCTCTTTCAGTGCCGATGAAAGCGTGCAGCAGACCGCGTTGCTCA
TCACGAGGCATTGTCTCAAGGGCACGAGTTCTCTCCATGACTTCAACGAC
ATCGTGGGTGCGAATGAATCGAAAATATTCGGTGAAACGGTAAAGACGAT
AAAAAAGGCAGTGGCGGCCTTGCTAGAGATGGGGGCAGACGCCCGCATTG
AGACCAAGAAGAAGAAAAAGAGGAAGGAGAAGGGAAGGAAGAAGGCGGCA
GATGAGGAAGAGAAGGAGAAAGAGATCCAGGTAGCTTTATTAAAGGGAGG
CTTATCCCTCAGCGCGGAATGCCTGAAAGCGAATCCTTCCCTTCTCCAAG
CCTACCTTCCTAACCTCTTCCTCGTCCTTCGCCTCGTCCTCACCAACTGC
TGCCCAGAAGAAAAGGGAGAGAGGGAGAGAGAGGAGGTCGAACAATCGCA
CATTCTTTCTGCAGCCTTGAATGAAGCCTTGGCCTGCGTCCTCAATGCCC
TCCTCTACCTCCCTTCTGACGCACTCGATTCCCTCCTAGGTTGCAACGAC
AGTGACAGCAGCAGCAGAAGCAGCAGAAGCAGCAGAAGCGGGAATGCATG
GCTGCTGGCGTCTCTACATCGCCTGTTGAACAAACACAAGCATGACCGTC
CCCCAAGTGTGGCCTCCGTGATTTGTAATATATATGCCGTCCTGGCAGGG
TGCAGCAGCAGCGGCGGCGGCAGCGGCGATAAAGTCAAGGCTGAAGAGGT
TGAGGACCAGAAGAACGACATCCCTCTATTGCTCACCCGCTTCTTCCTGG
ACGAGAAGGTCCAGGACCACGCACTCATTAAAGAGGCTATATTCGCTTTG
CAAGAGTTTGTTTGGGCATGTCCTCAAATGGTACTCCCACAGCTTCGTGC
CATGCCTGACGCGGCTGCACTCCAGACACGGCTGGGAAATCTGGTTGAAT
CTGGGGCGGTGGAATGCGAGTATTTGGCGCGAGTGCTGAAGGGAGGTGAG
GGGGGAGAGGATGATGAGAAGCTACTGGGCACCACGCCGATCAAAACGGG
GGACTGGATGGATCATGGGGGTTTGGGGCGGAGTGTGGTGAAGACCATGA
TGCACGACCGCCTCGAACAATTTCTGCTTGCCCGAAATGAAATTAATTGC
GGGGCGAGCGGTCGCCCCCTGGCTGAAGGAGATCGGATCATGCGCCTCAC
GAAATGCCAGCATTGGTTTCTGGAAGGAGAGCTGCGCAAGGTCGTTTTGG
GGGAAGACAACGAGGCTGTGGAAGAGGGGGGGGTATTATCTAGGTATTGG
AAGGAGGACCGCACGGAGACTTTGTGTCCCGTTTGTGGGCGGCACATGCG
TGTGGAAATTCGTGACTAG

Synonyms

Publications