NO02G01250.1, NO02G01250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01250.1
Unique NameNO02G01250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1191
Alignment locationchr2:378857..380572 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:378857..380572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01250.1 vs.
Match: EWM30508.1 (Ubiquitin [Nannochloropsis gaditana])

HSP 1 Score: 426.0 bits (1094), Expect = 1.300e-115
Identity = 257/393 (65.39%), Postives = 291/393 (74.05%), Query Frame = 0 
Query:    1 MSSRQGYSALSEEHYVDVEAPAGAEGGSQVI----------NSPAIPTATVAPSPIAASSTTSSSSPPPGAPAASVNPDLFQYPIRILDTQGHEHSLDGDSPASTIGALKLKVQTVAGVPPPQQRLIFAGRMLQDQQTLQSCNIQPGCVIHLFARPPPPPPGAPGSIASIVGPGAPGANGGEGGVAIGPGTHLNPFGLPSSFGDPELLRSTHSVKLFSSCLVAICAMQLLLLSLQLVASWSMGGGTEGRGGEVPPIPGGDDDNDGVSEEKGAEEIG--------AVFVLQVMMNILGLYVGLVGIRSANTLQLQSSKIYLYGLLVVGTAWMATRIIWAINSVTSGYDVDVGPTPS-STPPDSPSNGTDAGGGDSDGGGDVEYQQMDRGELIYM 375
            MSSRQGY ALSEE Y DVEA +G +G + V           N+    T+  +PS  A    +S  SPP  +P  S  P   Q+PIRILDT G EH+LD +SP STIG LK+KVQ  +GV P QQRLIFAGRMLQDQQTL+SC ++ GCVIHLFARPPPPPPGAPGSIAS+V P   GA G EGG+ +GPGTHLNP+GLPSSFGDPEL+RSTHSVKLFSSCLVAICAMQLLLL LQ++A+WSMG    G GGEV P PG +D   G    KGA   G        A+ +LQVMMN LGLYVGLVGIRSANTLQLQS+K+Y+YGLLVVGTAWMA+RIIWA+NSV  GYDVDVGP PS S+PP    NGTD GGG   GGG+  YQQMDRGELIYM
Sbjct:    1 MSSRQGYRALSEESY-DVEALSGLDGQADVPPTTTSTTTTGNATTASTSATSPSLSAPLPRSSPVSPPAPSPGPSGPP---QFPIRILDTHGKEHALDAESPLSTIGTLKVKVQAASGVSPAQQRLIFAGRMLQDQQTLRSCGVEAGCVIHLFARPPPPPPGAPGSIASVVNP-TSGA-GTEGGM-VGPGTHLNPYGLPSSFGDPELIRSTHSVKLFSSCLVAICAMQLLLLGLQMLAAWSMGA---GGGGEV-PAPGDEDGGGGEPGAKGAGGKGGGGVDGGSALLILQVMMNTLGLYVGLVGIRSANTLQLQSTKVYVYGLLVVGTAWMASRIIWAVNSVNLGYDVDVGPQPSASSPPPGAGNGTDDGGG---GGGEA-YQQMDRGELIYM 378
The following BLAST results are available for this feature:
BLAST of NO02G01250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30508.11.300e-11565.39Ubiquitin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01250NO02G01250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01250.1NO02G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01250.1.cds1NO02G01250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01250.1.cds2NO02G01250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01250.1.cds3NO02G01250.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01250.1.cds4NO02G01250.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01250.1 ID=NO02G01250.1|Name=NO02G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp
ATGTCGTCGCGCCAAGGTTATAGCGCCCTGTCCGAGGAGCACTATGTCGA
TGTAGAGGCCCCCGCAGGTGCTGAAGGAGGGTCACAAGTCATCAACTCCC
CGGCCATTCCCACCGCCACAGTCGCCCCCTCTCCCATTGCCGCCTCGTCG
ACTACGTCCTCTTCTTCTCCTCCCCCCGGTGCTCCTGCCGCTTCCGTCAA
CCCCGATCTATTCCAATATCCGATCCGAATCCTGGACACCCAAGGCCACG
AACACTCCCTCGATGGCGACAGCCCCGCCTCCACCATCGGCGCCTTGAAA
CTCAAGGTCCAAACCGTCGCCGGCGTCCCGCCCCCTCAGCAACGCCTCAT
CTTTGCCGGTCGCATGCTTCAAGACCAACAAACCCTCCAATCCTGTAACA
TTCAACCCGGATGTGTCATCCATCTCTTCGCCCGTCCACCCCCTCCCCCT
CCCGGGGCTCCCGGTAGCATCGCCAGCATCGTGGGTCCAGGCGCTCCTGG
CGCTAATGGAGGAGAGGGAGGCGTGGCGATTGGGCCTGGTACCCACTTAA
ATCCATTTGGGCTGCCAAGTAGTTTTGGTGATCCAGAACTCCTTCGAAGC
ACACATTCAGTGAAATTGTTCTCGTCGTGCCTAGTGGCGATATGTGCGAT
GCAATTGTTGTTGCTGTCGTTGCAGCTGGTGGCAAGCTGGAGTATGGGAG
GAGGAACGGAGGGAAGGGGAGGGGAGGTGCCGCCCATTCCTGGAGGGGAT
GATGATAATGATGGGGTGTCGGAAGAGAAAGGAGCGGAAGAAATAGGCGC
GGTGTTCGTTTTGCAAGTGATGATGAACATCTTGGGGCTTTATGTGGGCT
TGGTTGGGATAAGGAGCGCCAACACCCTCCAGCTGCAATCAAGCAAGATC
TACCTCTACGGTCTCCTGGTCGTAGGAACAGCCTGGATGGCGACAAGGAT
CATATGGGCCATTAATAGTGTCACCAGTGGCTACGACGTGGACGTTGGCC
CGACGCCTTCTTCGACTCCGCCGGACTCCCCCTCGAATGGGACGGACGCA
GGAGGGGGAGACAGTGATGGAGGAGGGGATGTGGAGTACCAGCAGATGGA
TAGGGGGGAGTTGATCTATATGCGGAAGCAGCAGCGACAACAGCAGCAAC
AACAGCAGCACAACCACCACCACCGCCATTACCACCTCTAA
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protein sequence of NO02G01250.1

>NO02G01250.1-protein ID=NO02G01250.1-protein|Name=NO02G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp
MSSRQGYSALSEEHYVDVEAPAGAEGGSQVINSPAIPTATVAPSPIAASS
TTSSSSPPPGAPAASVNPDLFQYPIRILDTQGHEHSLDGDSPASTIGALK
LKVQTVAGVPPPQQRLIFAGRMLQDQQTLQSCNIQPGCVIHLFARPPPPP
PGAPGSIASIVGPGAPGANGGEGGVAIGPGTHLNPFGLPSSFGDPELLRS
THSVKLFSSCLVAICAMQLLLLSLQLVASWSMGGGTEGRGGEVPPIPGGD
DDNDGVSEEKGAEEIGAVFVLQVMMNILGLYVGLVGIRSANTLQLQSSKI
YLYGLLVVGTAWMATRIIWAINSVTSGYDVDVGPTPSSTPPDSPSNGTDA
GGGDSDGGGDVEYQQMDRGELIYMRKQQRQQQQQQQHNHHHRHYHL*
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mRNA from alignment at chr2:378857..380572-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01250.1 ID=NO02G01250.1|Name=NO02G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1716bp|location=Sequence derived from alignment at chr2:378857..380572- (Nannochloropsis oceanica)
ATGTCGTCGCGCCAAGGTTATAGCGCCCTGTCCGAGGAGCACTATGTCGA
TGTAGAGGCCCCCGCAGGTGCTGAAGGAGGGTCACAAGGTAAAGAGAAAG
GTCGCAAGAATGATAAGGAGGAGGAGAAGGAGGGAAAAGAAAAAGATATG
CGTGCCTCACTGTTAAACTGCGCACTCAACTCCTCTCATGTCTCTGACAC
ACCCCACAGTCATCAACTCCCCGGCCATTCCCACCGCCACAGTCGCCCCC
TCTCCCATTGCCGCCTCGTCGACTACGTCCTCTTCTTCTCCTCCCCCCGG
TGCTCCTGCCGCTTCCGTCAACCCCGATCTATTCCAATATCCGATCCGAA
TCCTGGACACCCAAGGCCACGAACACTCCCTCGATGGCGACAGCCCCGCC
TCCACCATCGGCGCCTTGAAACTCAAGGTCCAAACCGTCGCCGGCGTCCC
GCCCCCTCAGCAACGCCTCATCTTTGCCGGTCGCATGCTTCAAGACCAAC
AAACCCTCCAATCCTGTAACATTCAACCCGGATGTGTCATCCATCTCTTC
GCCCGTCCACCCCCTCCCCCTCCCGGGGCTCCCGGTAGCATCGCCAGCAT
CGTGGGTCCAGGCGCTCCTGGCGCTAATGGAGGAGAGGGAGGCGTGGCGA
TTGGGCCTGGTACCCACTTAAATCCATTTGGGCTGCCAAGTAGTTTTGGT
GATCCAGAACTCCTTCGAAGCACACATTCAGTGAAATTGTTCTCGTCGTG
CCTAGTGGCGATATGTGCGATGCAATTGTTGTTGCTGTCGTTGCAGCTGG
TGGCAAGCTGGAGTATGGGAGGAGGAACGGAGGGAAGGGGAGGGGAGGTG
CCGCCCATTCCTGGAGGGGATGATGATAATGATGGGGTGTCGGAAGAGAA
AGGAGCGGAAGAAATAGGCGCGGTGTTCGTTTTGCAAGTGATGATGAACA
TCTTGGGGCTTTATGTGGGCTTGGTTGGGATAAGGAGGTGAGAAGGGAGG
AAGGAAGGAAGGGAGTGAGGAAGTAAGGGAGGGAGGGAGGGAGAAATGGA
ACCAAGAAAGTGTGATTTGACTCACTCAAAGTAATGTACTCCTCTATTTC
CCCTTCTTCTCTCTACAGCGCCAACACCCTCCAGCTGCAATCAAGCAAGA
TCTACCTCTACGGTCTCCTGGTCGTAGGAACAGCCTGGATGGCGACAAGG
ATCATATGGGCCATTAATAGTGTCACCAGTGGCTACGACGTGGACGTTGG
CCCGACGCCTTCTTCGACTCCGCCGGACTCCCCCTCGAATGGGACGGACG
CAGGAGGGGGAGACAGTGATGGAGGAGGGGATGTGGAGTACCAGCAGATG
GATAGGGGGGAGTTGATCTATATGGTGAGCCTAAGTTGCTTCTTATATTC
GTTGGTGTGGGGTGTGTGTTTTTTCAGGGCCAGTCAGTTTTACACGCTTG
TGAGGAGGGCGAATGGGTTGGGACCATGAAGGGGAGGGAGGGAGGGTGGG
TGGATGTATAGCAGATCAATGAGAAGAGCGTAAGCTGAGAGTAGACGGAG
ACGTTTGGTGTGCATATTGATAAGAAGACACAAAGAAATTGAGAGGGGGA
GAAAGGGGGAGTGGAAGAAGGTGGAAAAAATGCAAAAGCTGTCATAGCGG
AAGCAGCAGCGACAACAGCAGCAACAACAGCAGCACAACCACCACCACCG
CCATTACCACCTCTAA
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Coding sequence (CDS) from alignment at chr2:378857..380572-

>NO02G01250.1 ID=NO02G01250.1|Name=NO02G01250.1|organism=Nannochloropsis oceanica|type=CDS|length=1191bp|location=Sequence derived from alignment at chr2:378857..380572- (Nannochloropsis oceanica)
ATGTCGTCGCGCCAAGGTTATAGCGCCCTGTCCGAGGAGCACTATGTCGA
TGTAGAGGCCCCCGCAGGTGCTGAAGGAGGGTCACAAGTCATCAACTCCC
CGGCCATTCCCACCGCCACAGTCGCCCCCTCTCCCATTGCCGCCTCGTCG
ACTACGTCCTCTTCTTCTCCTCCCCCCGGTGCTCCTGCCGCTTCCGTCAA
CCCCGATCTATTCCAATATCCGATCCGAATCCTGGACACCCAAGGCCACG
AACACTCCCTCGATGGCGACAGCCCCGCCTCCACCATCGGCGCCTTGAAA
CTCAAGGTCCAAACCGTCGCCGGCGTCCCGCCCCCTCAGCAACGCCTCAT
CTTTGCCGGTCGCATGCTTCAAGACCAACAAACCCTCCAATCCTGTAACA
TTCAACCCGGATGTGTCATCCATCTCTTCGCCCGTCCACCCCCTCCCCCT
CCCGGGGCTCCCGGTAGCATCGCCAGCATCGTGGGTCCAGGCGCTCCTGG
CGCTAATGGAGGAGAGGGAGGCGTGGCGATTGGGCCTGGTACCCACTTAA
ATCCATTTGGGCTGCCAAGTAGTTTTGGTGATCCAGAACTCCTTCGAAGC
ACACATTCAGTGAAATTGTTCTCGTCGTGCCTAGTGGCGATATGTGCGAT
GCAATTGTTGTTGCTGTCGTTGCAGCTGGTGGCAAGCTGGAGTATGGGAG
GAGGAACGGAGGGAAGGGGAGGGGAGGTGCCGCCCATTCCTGGAGGGGAT
GATGATAATGATGGGGTGTCGGAAGAGAAAGGAGCGGAAGAAATAGGCGC
GGTGTTCGTTTTGCAAGTGATGATGAACATCTTGGGGCTTTATGTGGGCT
TGGTTGGGATAAGGAGCGCCAACACCCTCCAGCTGCAATCAAGCAAGATC
TACCTCTACGGTCTCCTGGTCGTAGGAACAGCCTGGATGGCGACAAGGAT
CATATGGGCCATTAATAGTGTCACCAGTGGCTACGACGTGGACGTTGGCC
CGACGCCTTCTTCGACTCCGCCGGACTCCCCCTCGAATGGGACGGACGCA
GGAGGGGGAGACAGTGATGGAGGAGGGGATGTGGAGTACCAGCAGATGGA
TAGGGGGGAGTTGATCTATATGCGGAAGCAGCAGCGACAACAGCAGCAAC
AACAGCAGCACAACCACCACCACCGCCATTACCACCTCTAA
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Synonyms
Publications