NO02G01240.1, NO02G01240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01240.1
Unique NameNO02G01240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length963
Alignment locationchr2:377319..378281 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:377319..378281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01240.1 vs.
Match: EWM30496.1 (Protein of unknown function DUF4336 [Nannochloropsis gaditana])

HSP 1 Score: 420.6 bits (1080), Expect = 4.300e-114
Identity = 224/342 (65.50%), Postives = 261/342 (76.32%), Query Frame = 0 
Query:    1 MSSSNRLKAAGGAPSSSSSPTPSSRLLSSSLPSS---------------ISQKKASP--VTSRPPSTPTK-----KLRPPVPLPEQDQIYARSLLPPKHKPTTLIISDEKRGLWVFEQPFVLGVVDVKNRMSVLRLSNGGFAIYSPLAATPECIAMLQNLIKDEKLSLKSAWFLVPSSFPEHHESLITWREVFPEARVVSVHPRINVIAEHLFEGSGAGGAGEQLPVELREDLGVGVLQTLLLRELIVCHKPSRTLLVSDSGFYINEEYSTSLTKGMTKLQGIYDRFVTPPFFRLGTDRKEGRALYGKIKEWEFDKIVTCHAELVPEGEGKEAFVEGYKHLA 321
            MSS NR KA+GG+  S    T SS   +++ PSS               I QK   P      PP TPT+      L P V +  +DQIY  SLLPP+ KPTTL+ISD KRGLWVFEQPFVLGVVDVKNRMSVLRLS+GGFA+YSPLAATPECI ML++L+K EKLSL SAWF+VPSSFPEHHESL+TWREVFPEARVVSVHPRINVI+E L EG     A  QLP  LR+DL V V +T LLRE+++ HKPS+TL V+DSGFYINEEYS SLT+G+T+LQGIYDRFVTPPFFRLG ++KEG+ LY ++K+W FDKIVTCHA LV EG+GKEAF+EGY+HLA
Sbjct:   47 MSSLNRPKASGGSSDSRRGGTRSSFSTANAKPSSWQRPRSSSSPPFTYPIPQKNPFPWKAAQSPPPTPTRLTPKSSLPPAVDVGARDQIYEPSLLPPRKKPTTLLISDRKRGLWVFEQPFVLGVVDVKNRMSVLRLSDGGFALYSPLAATPECIDMLKSLVKSEKLSLSSAWFMVPSSFPEHHESLVTWREVFPEARVVSVHPRINVISEFLLEGPST-DAPSQLPFPLRKDLDVAVYETPLLREMVLTHKPSKTLFVADSGFYINEEYSNSLTRGITQLQGIYDRFVTPPFFRLGMNKKEGKRLYERVKDWGFDKIVTCHAALVEEGKGKEAFLEGYRHLA 387
The following BLAST results are available for this feature:
BLAST of NO02G01240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30496.14.300e-11465.50Protein of unknown function DUF4336 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01240NO02G01240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01240.1NO02G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01240.1.cds1NO02G01240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01240.1 ID=NO02G01240.1|Name=NO02G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=963bp
ATGTCCTCCTCCAACCGACTCAAGGCTGCCGGGGGCGCTCCCTCCTCCAG
CTCTAGCCCTACCCCATCATCCCGCCTCCTTTCCTCCTCTTTACCATCAT
CGATCTCGCAAAAGAAAGCCTCACCAGTAACCTCTCGCCCTCCCTCCACG
CCCACCAAGAAGCTCCGTCCCCCCGTCCCCCTCCCCGAGCAAGACCAAAT
CTACGCCCGCTCTCTCCTTCCGCCAAAACATAAACCCACCACCCTTATCA
TCTCTGATGAAAAACGAGGCCTATGGGTCTTCGAGCAGCCCTTTGTATTG
GGTGTGGTGGATGTTAAAAACCGGATGAGTGTGTTGCGTCTCTCCAATGG
GGGTTTCGCGATTTATTCCCCCTTGGCCGCCACGCCTGAATGCATCGCAA
TGCTCCAAAATCTGATTAAAGACGAGAAACTATCGTTAAAATCAGCGTGG
TTCTTGGTGCCGAGCTCATTTCCTGAGCATCATGAGAGTCTGATCACCTG
GAGGGAGGTCTTTCCGGAAGCACGTGTGGTATCAGTTCACCCGAGAATTA
ATGTGATTGCCGAGCATCTGTTTGAGGGGTCGGGGGCGGGAGGTGCGGGG
GAGCAGTTACCGGTGGAGCTGCGGGAGGATTTAGGTGTGGGGGTCTTGCA
GACTCTATTGTTGAGGGAATTGATTGTGTGTCACAAGCCGAGTCGGACGT
TGCTTGTTTCGGATAGTGGCTTTTATATCAATGAGGAATATTCAACTAGT
CTGACAAAGGGGATGACCAAGTTACAGGGAATTTATGATAGGTTTGTGAC
CCCTCCCTTTTTCCGGCTGGGCACGGATAGGAAGGAGGGACGGGCATTGT
ATGGGAAGATTAAGGAGTGGGAATTTGATAAGATCGTGACATGTCATGCG
GAGCTTGTGCCGGAAGGGGAGGGGAAGGAGGCGTTCGTGGAGGGGTACAA
GCATCTAGCGTAA
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protein sequence of NO02G01240.1

>NO02G01240.1-protein ID=NO02G01240.1-protein|Name=NO02G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MSSSNRLKAAGGAPSSSSSPTPSSRLLSSSLPSSISQKKASPVTSRPPST
PTKKLRPPVPLPEQDQIYARSLLPPKHKPTTLIISDEKRGLWVFEQPFVL
GVVDVKNRMSVLRLSNGGFAIYSPLAATPECIAMLQNLIKDEKLSLKSAW
FLVPSSFPEHHESLITWREVFPEARVVSVHPRINVIAEHLFEGSGAGGAG
EQLPVELREDLGVGVLQTLLLRELIVCHKPSRTLLVSDSGFYINEEYSTS
LTKGMTKLQGIYDRFVTPPFFRLGTDRKEGRALYGKIKEWEFDKIVTCHA
ELVPEGEGKEAFVEGYKHLA*
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mRNA from alignment at chr2:377319..378281+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01240.1 ID=NO02G01240.1|Name=NO02G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=963bp|location=Sequence derived from alignment at chr2:377319..378281+ (Nannochloropsis oceanica)
ATGTCCTCCTCCAACCGACTCAAGGCTGCCGGGGGCGCTCCCTCCTCCAG
CTCTAGCCCTACCCCATCATCCCGCCTCCTTTCCTCCTCTTTACCATCAT
CGATCTCGCAAAAGAAAGCCTCACCAGTAACCTCTCGCCCTCCCTCCACG
CCCACCAAGAAGCTCCGTCCCCCCGTCCCCCTCCCCGAGCAAGACCAAAT
CTACGCCCGCTCTCTCCTTCCGCCAAAACATAAACCCACCACCCTTATCA
TCTCTGATGAAAAACGAGGCCTATGGGTCTTCGAGCAGCCCTTTGTATTG
GGTGTGGTGGATGTTAAAAACCGGATGAGTGTGTTGCGTCTCTCCAATGG
GGGTTTCGCGATTTATTCCCCCTTGGCCGCCACGCCTGAATGCATCGCAA
TGCTCCAAAATCTGATTAAAGACGAGAAACTATCGTTAAAATCAGCGTGG
TTCTTGGTGCCGAGCTCATTTCCTGAGCATCATGAGAGTCTGATCACCTG
GAGGGAGGTCTTTCCGGAAGCACGTGTGGTATCAGTTCACCCGAGAATTA
ATGTGATTGCCGAGCATCTGTTTGAGGGGTCGGGGGCGGGAGGTGCGGGG
GAGCAGTTACCGGTGGAGCTGCGGGAGGATTTAGGTGTGGGGGTCTTGCA
GACTCTATTGTTGAGGGAATTGATTGTGTGTCACAAGCCGAGTCGGACGT
TGCTTGTTTCGGATAGTGGCTTTTATATCAATGAGGAATATTCAACTAGT
CTGACAAAGGGGATGACCAAGTTACAGGGAATTTATGATAGGTTTGTGAC
CCCTCCCTTTTTCCGGCTGGGCACGGATAGGAAGGAGGGACGGGCATTGT
ATGGGAAGATTAAGGAGTGGGAATTTGATAAGATCGTGACATGTCATGCG
GAGCTTGTGCCGGAAGGGGAGGGGAAGGAGGCGTTCGTGGAGGGGTACAA
GCATCTAGCGTAA
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Coding sequence (CDS) from alignment at chr2:377319..378281+

>NO02G01240.1 ID=NO02G01240.1|Name=NO02G01240.1|organism=Nannochloropsis oceanica|type=CDS|length=963bp|location=Sequence derived from alignment at chr2:377319..378281+ (Nannochloropsis oceanica)
ATGTCCTCCTCCAACCGACTCAAGGCTGCCGGGGGCGCTCCCTCCTCCAG
CTCTAGCCCTACCCCATCATCCCGCCTCCTTTCCTCCTCTTTACCATCAT
CGATCTCGCAAAAGAAAGCCTCACCAGTAACCTCTCGCCCTCCCTCCACG
CCCACCAAGAAGCTCCGTCCCCCCGTCCCCCTCCCCGAGCAAGACCAAAT
CTACGCCCGCTCTCTCCTTCCGCCAAAACATAAACCCACCACCCTTATCA
TCTCTGATGAAAAACGAGGCCTATGGGTCTTCGAGCAGCCCTTTGTATTG
GGTGTGGTGGATGTTAAAAACCGGATGAGTGTGTTGCGTCTCTCCAATGG
GGGTTTCGCGATTTATTCCCCCTTGGCCGCCACGCCTGAATGCATCGCAA
TGCTCCAAAATCTGATTAAAGACGAGAAACTATCGTTAAAATCAGCGTGG
TTCTTGGTGCCGAGCTCATTTCCTGAGCATCATGAGAGTCTGATCACCTG
GAGGGAGGTCTTTCCGGAAGCACGTGTGGTATCAGTTCACCCGAGAATTA
ATGTGATTGCCGAGCATCTGTTTGAGGGGTCGGGGGCGGGAGGTGCGGGG
GAGCAGTTACCGGTGGAGCTGCGGGAGGATTTAGGTGTGGGGGTCTTGCA
GACTCTATTGTTGAGGGAATTGATTGTGTGTCACAAGCCGAGTCGGACGT
TGCTTGTTTCGGATAGTGGCTTTTATATCAATGAGGAATATTCAACTAGT
CTGACAAAGGGGATGACCAAGTTACAGGGAATTTATGATAGGTTTGTGAC
CCCTCCCTTTTTCCGGCTGGGCACGGATAGGAAGGAGGGACGGGCATTGT
ATGGGAAGATTAAGGAGTGGGAATTTGATAAGATCGTGACATGTCATGCG
GAGCTTGTGCCGGAAGGGGAGGGGAAGGAGGCGTTCGTGGAGGGGTACAA
GCATCTAGCGTAA
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Synonyms
Publications