NO02G01220.1, NO02G01220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01220.1
Unique NameNO02G01220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length462
Alignment locationchr2:374160..374621 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:374160..374621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01220.1 vs.
Match: EWM30465.1 (hypothetical protein Naga_100013g83 [Nannochloropsis gaditana])

HSP 1 Score: 150.2 bits (378), Expect = 5.200e-33
Identity = 81/146 (55.48%), Postives = 95/146 (65.07%), Query Frame = 0 
Query:    8 LEVVPLLHLLLSVLLVQPFNALQIPLGPVLTPSSSNFRLPRAWSSFSAASSSWALSSSIATASSSPTPVNTEKLCKNCKTYFNPIMNHDRACRYHPKHYSGDTKRKADWSDNADRFGTQKMYWCCGEEDEKAPGCKYDRHRSYDDE 154
            L +  LL ++  +LLV   N     +  +L+ +  N   P   S   + SS    S +I           TE LCKNCKTY++P  NH+RACRYHPKHYSGDTKRKADWS +ADRF TQKMYWCCGEEDE APGCKYDRHRSYDDE
Sbjct:    9 LNIASLLRIIAILLLVLHPNHAWFSISRLLSRTVKN--APGHLSVLGSGSSDIHQSCTI-----------TEMLCKNCKTYYDPSRNHERACRYHPKHYSGDTKRKADWSASADRFATQKMYWCCGEEDENAPGCKYDRHRSYDDE 141
The following BLAST results are available for this feature:
BLAST of NO02G01220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30465.15.200e-3355.48hypothetical protein Naga_100013g83 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01220NO02G01220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01220.1NO02G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01220.1.cds1NO02G01220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01220.1 ID=NO02G01220.1|Name=NO02G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=462bp
ATGCCACAGCAATCCAAACGACTCGAAGTTGTCCCCCTCCTTCACCTCCT
CCTCAGTGTCCTCTTAGTACAGCCCTTCAATGCTTTGCAGATCCCGTTGG
GGCCAGTCCTTACCCCAAGTAGCTCGAACTTCCGCCTGCCCAGGGCCTGG
TCTTCCTTCTCCGCCGCCTCTTCGTCGTGGGCTCTCTCAAGCAGCATCGC
CACCGCCTCATCCTCCCCCACACCCGTCAACACGGAAAAGTTGTGCAAAA
ATTGTAAGACCTACTTTAACCCGATAATGAATCACGATCGCGCTTGTAGG
TATCACCCCAAGCACTATTCTGGGGACACGAAACGCAAGGCTGACTGGAG
CGACAACGCCGACCGATTTGGCACCCAGAAGATGTACTGGTGTTGTGGTG
AAGAAGACGAAAAGGCACCAGGATGCAAATATGATAGACATCGGAGCTAC
GATGATGAATGA
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protein sequence of NO02G01220.1

>NO02G01220.1-protein ID=NO02G01220.1-protein|Name=NO02G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MPQQSKRLEVVPLLHLLLSVLLVQPFNALQIPLGPVLTPSSSNFRLPRAW
SSFSAASSSWALSSSIATASSSPTPVNTEKLCKNCKTYFNPIMNHDRACR
YHPKHYSGDTKRKADWSDNADRFGTQKMYWCCGEEDEKAPGCKYDRHRSY
DDE*
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mRNA from alignment at chr2:374160..374621-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01220.1 ID=NO02G01220.1|Name=NO02G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=462bp|location=Sequence derived from alignment at chr2:374160..374621- (Nannochloropsis oceanica)
ATGCCACAGCAATCCAAACGACTCGAAGTTGTCCCCCTCCTTCACCTCCT
CCTCAGTGTCCTCTTAGTACAGCCCTTCAATGCTTTGCAGATCCCGTTGG
GGCCAGTCCTTACCCCAAGTAGCTCGAACTTCCGCCTGCCCAGGGCCTGG
TCTTCCTTCTCCGCCGCCTCTTCGTCGTGGGCTCTCTCAAGCAGCATCGC
CACCGCCTCATCCTCCCCCACACCCGTCAACACGGAAAAGTTGTGCAAAA
ATTGTAAGACCTACTTTAACCCGATAATGAATCACGATCGCGCTTGTAGG
TATCACCCCAAGCACTATTCTGGGGACACGAAACGCAAGGCTGACTGGAG
CGACAACGCCGACCGATTTGGCACCCAGAAGATGTACTGGTGTTGTGGTG
AAGAAGACGAAAAGGCACCAGGATGCAAATATGATAGACATCGGAGCTAC
GATGATGAATGA
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Coding sequence (CDS) from alignment at chr2:374160..374621-

>NO02G01220.1 ID=NO02G01220.1|Name=NO02G01220.1|organism=Nannochloropsis oceanica|type=CDS|length=462bp|location=Sequence derived from alignment at chr2:374160..374621- (Nannochloropsis oceanica)
ATGCCACAGCAATCCAAACGACTCGAAGTTGTCCCCCTCCTTCACCTCCT
CCTCAGTGTCCTCTTAGTACAGCCCTTCAATGCTTTGCAGATCCCGTTGG
GGCCAGTCCTTACCCCAAGTAGCTCGAACTTCCGCCTGCCCAGGGCCTGG
TCTTCCTTCTCCGCCGCCTCTTCGTCGTGGGCTCTCTCAAGCAGCATCGC
CACCGCCTCATCCTCCCCCACACCCGTCAACACGGAAAAGTTGTGCAAAA
ATTGTAAGACCTACTTTAACCCGATAATGAATCACGATCGCGCTTGTAGG
TATCACCCCAAGCACTATTCTGGGGACACGAAACGCAAGGCTGACTGGAG
CGACAACGCCGACCGATTTGGCACCCAGAAGATGTACTGGTGTTGTGGTG
AAGAAGACGAAAAGGCACCAGGATGCAAATATGATAGACATCGGAGCTAC
GATGATGAATGA
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Synonyms
Publications