NO02G01190.1, NO02G01190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01190.1
Unique NameNO02G01190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3007
Alignment locationchr2:367602..370957 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:367602..370957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01190.1 vs.
Match: EWM30461.1 (heat shock protein [Nannochloropsis gaditana])

HSP 1 Score: 405.2 bits (1040), Expect = 1.500e-109
Identity = 213/265 (80.38%), Postives = 228/265 (86.04%), Query Frame = 0 
Query:    1 MLTHIVR-------TATKPPVAAMLSPLASIPSISSSLASSSNAYS------GTKRWVSSKPAALHPRYGFYGGDHAGHLTMHATTILCVRKGDKVVMMGDGQVSQGSTVVKPNAKKVRRIGEDIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGIIAIGSGGTFALAAAKALLDRDDMDAEQIAHKAMSIAADICVYTNNNFVTEVVGGEKENEEEKA 253
            ML+H++R       TA KPP  +  SPLASIP  S+SL S S  +       G  R +    A  HPR GFYGGDHAGHLTMHATTILCVRKGDKVVMMGDGQVSQG+TVVKPNAKKVRR+GEDIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDG+IAIGSGGTFALAAAKALLDR+DMDAEQIAHKAMSIAA+ICVYTNNNFVTEVVGG+K+NE  +A
Sbjct:    1 MLSHLLRRSVSGTSTALKPPFGSFTSPLASIPCSSNSLTSCSINWDTDASGPGGCRRLHQAAALRHPRSGFYGGDHAGHLTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGEDIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNFVTEVVGGDKKNESAEA 265
The following BLAST results are available for this feature:
BLAST of NO02G01190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30461.11.500e-10980.38heat shock protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01190NO02G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01190.1NO02G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01190.1.cds1NO02G01190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01190.1.cds2NO02G01190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01190.1 ID=NO02G01190.1|Name=NO02G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=3007bp
TCTCTAATTGGTCGTTACTTTTATTTCTTTTTGTACAGATTTACAAGCGC
TGCCCTGCTCCTGCTCGATTATACGACTTCCTCGTGCCTTTTACTTTTAC
TCTTTCGCATCTTCTAGCCCCCATTTCCACCATCAGTACCTCGCGCCGCT
ATCTCAGTTGCCAACTGGCCACAGGCGCTCGATTCCTCCCTTCCCCGTGG
CGTCCTTACAAAGGTTGGCCATCCGCCCTGAGTCCGCACGTAAGCTTGAA
AATTCAAAATAGTGTCCCATTTCGAGGGTTTCCATCCATTCACCCCCGTA
TCATTGTACGGGATGAGATTTACTTTCACACTCTCTCTCCCAAATGGCCG
TAGGAAATCCACCAACGCCTCCGCGTCGGCCAACGCATCATTTACACCGT
CAATTAACGTACATTCGATAAAAATGTCTGTATCTCCCCTCTGGGCCATC
ACCTCCCTAAAAGCCTCCCGCAACTCGACCATCGTTGCACTAGTAGTAGG
GACCAAGGCCCGCCTCATGACGTCTGTTGCTCCGTGGACAGACCAGGCGA
TTTTGGCCTTAGGCATGCCTAGGAAACGCCGGATGTGGGCGGGAGAAGGA
GCGACGGTAGAGACGGTGACAAAGTTGGGAGAGAGAGCGAAGCCATGGGC
GTCTGTCATGGCTTGGAGTGCCTGGGAGACGGCGTGGGGGTTGTTGAGAG
GCTCGCCCATACCCTATTTGTTGTGTTTTCAGATGTGTCAGTGGAAAAGG
AGGTGGGAGAGAAATAAGTGGTGGCCTGAGCGCAAAATGGGGATCGGATG
ATGTAAACAAAACATCCCGCACCCGAAGAGATTTTTATCAACTTAGACCG
CCTGGTATTTAAATAGCACCACTCACCATAAAAACCACGTTTCGCACGTC
GGGTAACCCGTCCTTCCTCGCCACCTGCAACGCTAACTGAAGCTGCATCA
AGATTTCGTCAGCTTTTAGATGCCGAATGAATCCCATCATCCCCGTCAAA
CAAAACGCACATGCCTGCGCACAGCCCACCTGCGAGGAAACACAGACCGT
GGAACGAGACGCCACAGTAGATGCAGAGGCTTTGCCATTGACAGTTTTCT
CAGCGCTAGGGATTACCACGCTCTCTACCAAAAGCCCATCACGCAATCGA
ATCAAAAGCTTGACCGTACCACAGGGGCTACGTGTCGTCTCCGCTACGGT
CCAATGCGGGACTTGGACACGTTCTTGCAGCAAATTCCGAGTTTTTCTCG
TAATTCGTCCGTCGTAGAGCGAAGCGTCGGGGTCGGTTTGATATGGATCG
AGGCCTTCCCGGACGGCGCGCCAGACCATGCGGGCCCTCCCCTTACCTCG
CAAAACATCCTCCAAACCCGCCGTACCGAGCTCTAAGAGGGTCTGCTTTC
TGGTTGATAGGAGATGGCGGTCGCCGTCGAGGATGGTGAGAGTCGAGGGC
ACAGGCGAGTGCGCAGGGCTGGTGCTGGTGGGGACGGCAGCAGTTGCGAG
CGTGGCAAGAGGGCGCCTCCTATTGATACAAGCAGTGCCAGAGGAAAGAG
AGGGACGAGGCTTCACGAGGAAGGCCGTGGCGGAAGAGAGCAGCAAGAGC
GCCATGAGCTTGCCCATGTTGCTCCGGTCCCTCGATGATGATGCTGATTT
TTCGTCTCTTGTGACCTCCTGAGCGCTAAACTACCGCGCCTGTGCCGTGG
AGGACAAGGTCACACTACGCTGCCTATGTCGAGGCGTGTGGGGAAGGCGT
CCATCAATATCTACATCTGCATTTATCGTAACGAGAAAAGATGTAGCACG
TCGATAGGTGGCGAGCCGGAGTCAGGTGATCAAGCACAATATGTGCATAT
AGTGCTCACGTACACAGCCATCATTGTCGACCCAAAATACATGCCACTCT
TGCTTCTGTCGCCCCGTCTACTTATTTCCCTGTCAGCCGTCCTTTGACCT
GTCTCTTATCATTTTTCCTCCGCCCCCTTAAACACCCACTCACACTCAAC
ACAGACACGCCTAAAGAAGCTATGCTGACCCACATCGTCCGCACTGCCAC
CAAGCCGCCGGTGGCTGCCATGCTGTCGCCCTTGGCTTCGATACCAAGCA
TCAGCAGCTCCCTGGCCAGCAGCAGCAACGCTTACAGCGGCACCAAGAGG
TGGGTGTCTTCTAAACCCGCCGCCCTACACCCGCGTTATGGGTTTTACGG
CGGGGACCATGCAGGCCACTTGACGATGCACGCCACCACCATCCTCTGTG
TACGCAAGGGCGACAAGGTGGTCATGATGGGTGACGGGCAAGTATCACAA
GGGTCCACGGTGGTGAAGCCGAATGCGAAAAAGGTGCGGCGGATTGGAGA
GGACATAATTGCTGGTTTTGCTGGCTCGACCGCTGACTGCTTCACGCTGA
TGGAGCGTCTGGAGCGGAAACTGGAGGAGCATCCAGGTCAGTTAACACGG
GCATGCGTAGATTTAGCGAAAGCCTGGCGGACAGACAAGTACTTGCGGCG
GTTGGAGGCGTCATTGTTGGTGGCGGATAAGAACGTGTCGTTTGAGATTA
CGGGACTGGGTGACGTGTTGGAGCCCAAGGATGGGATAATTGCCATTGGT
TCCGGGGGTACATTTGCATTAGCTGCGGCCAAAGCGTTACTGGACCGGGA
CGACATGGACGCTGAGCAAATCGCACACAAAGCCATGTCCATTGCCGCCG
ATATCTGTGTCTACACAAACAACAACTTCGTCACCGAGGTTGTTGGAGGG
GAGAAGGAGAACGAGGAGGAGAAGGCGGGAAAAGCAGGCTAGAAGTCATG
AATATGAGAAAACAGAGGCTGTGAGATATATAACTTGGAGAAGGGAGGGA
GGGAGCGGGGATGGAGGAAGGGGAGAAAGGTTGCGTTTGCTGGCTACATC
CATGGACAGACAGCAAAGCTGCTAGGCACTCTCACCAGAAAGACTGAAAG
AAAGACATGTTTTCGAAACGACAAGGGCTTTCACTTATCCTACTACCACT
GGAGGTG
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protein sequence of NO02G01190.1

>NO02G01190.1-protein ID=NO02G01190.1-protein|Name=NO02G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MLTHIVRTATKPPVAAMLSPLASIPSISSSLASSSNAYSGTKRWVSSKPA
ALHPRYGFYGGDHAGHLTMHATTILCVRKGDKVVMMGDGQVSQGSTVVKP
NAKKVRRIGEDIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAK
AWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGIIAIGSGGTFAL
AAAKALLDRDDMDAEQIAHKAMSIAADICVYTNNNFVTEVVGGEKENEEE
KAGKAG*
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mRNA from alignment at chr2:367602..370957+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01190.1 ID=NO02G01190.1|Name=NO02G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=3356bp|location=Sequence derived from alignment at chr2:367602..370957+ (Nannochloropsis oceanica)
TCTCTAATTGGTCGTTACTTTTATTTCTTTTTGTACAGATTTACAAGCGC
TGCCCTGCTCCTGCTCGATTATACGACTTCCTCGTGCCTTTTACTTTTAC
TCTTTCGCATCTTCTAGCCCCCATTTCCACCATCAGTACCTCGCGCCGCT
ATCTCAGTTGCCAACTGGCCACAGGCGCTCGATTCCTCCCTTCCCCGTGG
CGTCCTTACAAAGGTTGGCCATCCGCCCTGAGTCCGCACGTAAGCTTGAA
AATTCAAAATAGTGTCCCATTTCGAGGGTTTCCATCCATTCACCCCCGTA
TCATTGTACGGGATGAGATTTACTTTCACACTCTCTCTCCCAAATGGCCG
TAGGAAATCCACCAACGCCTCCGCGTCGGCCAACGCATCATTTACACCGT
CAATTAACGTACATTCGATAAAAATGTCTGTATCTCCCCTCTGGGCCATC
ACCTCCCTAAAAGCCTCCCGCAACTCGACCATCGTTGCACTAGTAGTAGG
GACCAAGGCCCGCCTCATGACGTCTGTTGCTCCGTGGACAGACCAGGCGA
TTTTGGCCTTAGGCATGCCTAGGAAACGCCGGATGTGGGCGGGAGAAGGA
GCGACGGTAGAGACGGTGACAAAGTTGGGAGAGAGAGCGAAGCCATGGGC
GTCTGTCATGGCTTGGAGTGCCTGGGAGACGGCGTGGGGGTTGTTGAGAG
GCTCGCCCATACCCTATTTGTTGTGTTTTCAGATGTGTCAGTGGAAAAGG
AGGTGGGAGAGAAATAAGTGGTGGCCTGAGCGCAAAATGGGGATCGGATG
ATGTAAACAAAACATCCCGCACCCGAAGAGATTTTTATCAACTTAGACCG
CCTGGTATTTAAATAGCACCACTCACCATAAAAACCACGTTTCGCACGTC
GGGTAACCCGTCCTTCCTCGCCACCTGCAACGCTAACTGAAGCTGCATCA
AGATTTCGTCAGCTTTTAGATGCCGAATGAATCCCATCATCCCCGTCAAA
CAAAACGCACATGCCTGCGCACAGCCCACCTGCGAGGAAACACAGACCGT
GGAACGAGACGCCACAGTAGATGCAGAGGCTTTGCCATTGACAGTTTTCT
CAGCGCTAGGGATTACCACGCTCTCTACCAAAAGCCCATCACGCAATCGA
ATCAAAAGCTTGACCGTACCACAGGGGCTACGTGTCGTCTCCGCTACGGT
CCAATGCGGGACTTGGACACGTTCTTGCAGCAAATTCCGAGTTTTTCTCG
TAATTCGTCCGTCGTAGAGCGAAGCGTCGGGGTCGGTTTGATATGGATCG
AGGCCTTCCCGGACGGCGCGCCAGACCATGCGGGCCCTCCCCTTACCTCG
CAAAACATCCTCCAAACCCGCCGTACCGAGCTCTAAGAGGGTCTGCTTTC
TGGTTGATAGGAGATGGCGGTCGCCGTCGAGGATGGTGAGAGTCGAGGGC
ACAGGCGAGTGCGCAGGGCTGGTGCTGGTGGGGACGGCAGCAGTTGCGAG
CGTGGCAAGAGGGCGCCTCCTATTGATACAAGCAGTGCCAGAGGAAAGAG
AGGGACGAGGCTTCACGAGGAAGGCCGTGGCGGAAGAGAGCAGCAAGAGC
GCCATGAGCTTGCCCATGTTGCTCCGGTCCCTCGATGATGATGCTGATTT
TTCGTCTCTTGTGACCTCCTGAGCGCTAAACTACCGCGCCTGTGCCGTGG
AGGACAAGGTCACACTACGCTGCCTATGTCGAGGCGTGTGGGGAAGGCGT
CCATCAATATCTACATCTGCATTTATCGTAACGAGAAAAGATGTAGCACG
TCGATAGGTGGCGAGCCGGAGTCAGGTGATCAAGCACAATATGTGCATAT
AGTGCTCACGTACACAGCCATCATTGTCGACCCAAAATACATGCCACTCT
TGCTTCTGTCGCCCCGTCTACTTATTTCCCTGTCAGCCGTCCTTTGACCT
GTCTCTTATCATTTTTCCTCCGCCCCCTTAAACACCCACTCACACTCAAC
ACAGACACGCCTAAAGAAGCTATGCTGACCCACATCGTCCGCACTGCCAC
CAAGCCGCCGGTGGCTGCCATGCTGTCGCCCTTGGCTTCGATACCAAGCA
TCAGCAGCTCCCTGGCCAGCAGCAGCAACGCTTACAGCGGCACCAAGAGG
TGGGTGTCTTCTAAACCCGCCGCCCTACACCCGCGTTATGGGTTTTACGG
CGGGGACCATGCAGGCCACTTGACGATGCACGCCACCACCATCCTCTGTG
TACGCAAGGGCGACAAGGTGGTCATGATGGGTGACGGGCAAGTATCACAA
GGGTCCACGGTGGTGAAGCCGAATGCGAAAAAGGTGCGGCGGATTGGAGA
GGACATAATTGCTGGTTTTGCTGGCTCGACCGCTGACTGCTTCACGCTGA
TGGAGCGTCTGGAGCGGAAACTGGAGGAGCATCCAGGTCAGTTAACACGG
GCATGCGTAGATTTAGCGAAAGCCTGGCGGACAGACAAGTACTTGCGGCG
GTTGGAGGCGTCATTGTTGGTGGCGGATAAGAACGTGTCGTTTGAGATTA
CGGGACTGGGTGACGTGTTGGAGCCCAAGGATGGGATAATTGCCATTGGT
TCCGGGGGTACATTTGCATTAGGTAAGTGGTTGTAGGTGGGATGATGCTT
TTCTTTGGAGAGGAAGTGGTATAGAGATGTGGAGAGGAGGAGAGGAGTGG
TGAGGTACTCTGACTTGTGGAAGACAAGCCACGCGAAGAAGAGCGTTTTA
CCCGGTTCATTCACATGAAGATATCATTTTCCCCCTTTAGGATGCTTGTA
TACTTTCTCAACCATAGACTTACACAGCCAAAGTCTTTCCCTCACTCTCC
ATCATTGCTGGTCAATATTATACCTGTCTCTTGTCCCGTCATTCGCGCGG
CAATTGTTTTTTTGGTTTCAGCATCACTCCAACCATGTTGAAACGCCTAT
ACACCAACTCATTTACAACAGCTGCGGCCAAAGCGTTACTGGACCGGGAC
GACATGGACGCTGAGCAAATCGCACACAAAGCCATGTCCATTGCCGCCGA
TATCTGTGTCTACACAAACAACAACTTCGTCACCGAGGTTGTTGGAGGGG
AGAAGGAGAACGAGGAGGAGAAGGCGGGAAAAGCAGGCTAGAAGTCATGA
ATATGAGAAAACAGAGGCTGTGAGATATATAACTTGGAGAAGGGAGGGAG
GGAGCGGGGATGGAGGAAGGGGAGAAAGGTTGCGTTTGCTGGCTACATCC
ATGGACAGACAGCAAAGCTGCTAGGCACTCTCACCAGAAAGACTGAAAGA
AAGACATGTTTTCGAAACGACAAGGGCTTTCACTTATCCTACTACCACTG
GAGGTG
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Coding sequence (CDS) from alignment at chr2:367602..370957+

>NO02G01190.1 ID=NO02G01190.1|Name=NO02G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=771bp|location=Sequence derived from alignment at chr2:367602..370957+ (Nannochloropsis oceanica)
ATGCTGACCCACATCGTCCGCACTGCCACCAAGCCGCCGGTGGCTGCCAT
GCTGTCGCCCTTGGCTTCGATACCAAGCATCAGCAGCTCCCTGGCCAGCA
GCAGCAACGCTTACAGCGGCACCAAGAGGTGGGTGTCTTCTAAACCCGCC
GCCCTACACCCGCGTTATGGGTTTTACGGCGGGGACCATGCAGGCCACTT
GACGATGCACGCCACCACCATCCTCTGTGTACGCAAGGGCGACAAGGTGG
TCATGATGGGTGACGGGCAAGTATCACAAGGGTCCACGGTGGTGAAGCCG
AATGCGAAAAAGGTGCGGCGGATTGGAGAGGACATAATTGCTGGTTTTGC
TGGCTCGACCGCTGACTGCTTCACGCTGATGGAGCGTCTGGAGCGGAAAC
TGGAGGAGCATCCAGGTCAGTTAACACGGGCATGCGTAGATTTAGCGAAA
GCCTGGCGGACAGACAAGTACTTGCGGCGGTTGGAGGCGTCATTGTTGGT
GGCGGATAAGAACGTGTCGTTTGAGATTACGGGACTGGGTGACGTGTTGG
AGCCCAAGGATGGGATAATTGCCATTGGTTCCGGGGGTACATTTGCATTA
GCTGCGGCCAAAGCGTTACTGGACCGGGACGACATGGACGCTGAGCAAAT
CGCACACAAAGCCATGTCCATTGCCGCCGATATCTGTGTCTACACAAACA
ACAACTTCGTCACCGAGGTTGTTGGAGGGGAGAAGGAGAACGAGGAGGAG
AAGGCGGGAAAAGCAGGCTAG
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Synonyms
Publications