NO02G01170.1, NO02G01170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01170.1
Unique NameNO02G01170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1716
Alignment locationchr2:363318..365033 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:363318..365033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01170.1 vs.
Match: EWM30479.1 (udp-glucose pyrophosphorylase 2 [Nannochloropsis gaditana])

HSP 1 Score: 908.7 bits (2347), Expect = 8.000e-261
Identity = 452/491 (92.06%), Postives = 469/491 (95.52%), Query Frame = 0 
Query:    1 MPRALLHKVEDKYLRGTASHSVEETMREALVADNILPAPQRKNFMKLFGKFLEFRSRPPIDWTQVEPVEPTKLMDWEALPECPEDQAVRHELLDKLVILKLNGGLGTTMGCTLPKSAIEVRQEMTFLDMTVRQVEYLNSLYGVDVPLLLMNSFKTDAVTLRLLNKYRQHNLTIHTFMQSCFPRIVKDTLQPLPQGPFNEENEADWYPPGHGDLYQSLFQSGLLDNLIEQGKEYMFISNVDNLGATVDLNLLYYIVDNDIEFCTGVVDLTRADQDGGVLTAYKGKRLVVELSQLPKQHLETVAKKFTAFHTNNVWINLRALHALLVEEKLSIDLVTHERVVDRLKILQLETTIGSVIKDFTKVLTMKVPRSRYLPVKSTSDLFLVQSSLYSVSRGMLLPNPGRPYAKDKVPIIKLGEQFVHIQDYLERIPHGVPDLVALEHLTVAGDVVFGANVTLKGTVIIVANEGSVIMIPDGTVLEDKVVTGNLRILDH 492
            M RA LHKVEDKYLRG  SHS EE MREA+V DNILP PQRKNFMKLFGKFLE R+RP +DWTQVE V   +LMDWEALP+CP+DQAVRHELLDKLVILKLNGGLGT MGCTLPKSAIEVRQ+MTFLDMTVRQVEYLNSLYGVDVPLLLMNSFKTDAVT RLLNKYRQHNLTIHTFMQSCFPRIVKDTLQPLPQGPF EENEADWYPPGHGDL+QSLFQSGLLDNLIEQGKEYMFISNVDNLGATVDLNLLY+I DNDIEFCTGVVDLTRADQDGGVLT YKGKR+VVELSQ+PKQHLETVAKKFT FHTNN+WINLRALHALLVEEKLSIDLVTHERVVDRLKILQLETTIGSVIKDF+ VLTMKVPRSRYLPVKSTSDLFLVQSSLYSVSRGML+PNPGRPYAKDK+PIIKLGEQFVHIQDYLERIP+GVPDL+ALEHLTVAGDVVFGANVTLKGTVIIVANEGSVIMIPD TVLEDKVVTGNLRILDH
Sbjct:    1 MHRAPLHKVEDKYLRGNISHSAEEAMREAIVTDNILPPPQRKNFMKLFGKFLESRTRPSLDWTQVEQVPSEQLMDWEALPKCPDDQAVRHELLDKLVILKLNGGLGTRMGCTLPKSAIEVRQDMTFLDMTVRQVEYLNSLYGVDVPLLLMNSFKTDAVTSRLLNKYRQHNLTIHTFMQSCFPRIVKDTLQPLPQGPFAEENEADWYPPGHGDLFQSLFQSGLLDNLIEQGKEYMFISNVDNLGATVDLNLLYFIADNDIEFCTGVVDLTRADQDGGVLTTYKGKRVVVELSQVPKQHLETVAKKFTLFHTNNIWINLRALHALLVEEKLSIDLVTHERVVDRLKILQLETTIGSVIKDFSNVLTMKVPRSRYLPVKSTSDLFLVQSSLYSVSRGMLIPNPGRPYAKDKIPIIKLGEQFVHIQDYLERIPNGVPDLLALEHLTVAGDVVFGANVTLKGTVIIVANEGSVIMIPDKTVLEDKVVTGNLRILDH 491
The following BLAST results are available for this feature:
BLAST of NO02G01170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30479.18.000e-26192.06udp-glucose pyrophosphorylase 2 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01170NO02G01170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01170.1NO02G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01170.1.cds1NO02G01170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01170.1 ID=NO02G01170.1|Name=NO02G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1716bp
AATACACAGTGAAAACTTCCTGGTGCAGCCTGATTGTGTGTCTAAACCCC
ATCTTATCCCTATCACTGTCGTTCCTGTGCATCCAACCACTCCACTCACG
CAGCACCTCGAGCGTCAAGCCATATCTCAATCCCGCACATATCTCTCCCT
GACACAAGACACGAGATCACCATGCCGCGCGCACTCCTCCATAAGGTGGA
GGACAAGTATTTGCGGGGCACGGCTAGTCATTCAGTGGAAGAAACCATGA
GGGAAGCGCTCGTGGCAGACAACATTTTGCCTGCGCCGCAGCGCAAGAAT
TTTATGAAGCTGTTTGGCAAGTTTTTGGAGTTCCGATCACGCCCACCCAT
TGATTGGACGCAAGTCGAGCCTGTGGAGCCCACAAAGTTGATGGACTGGG
AAGCATTGCCTGAATGCCCGGAAGACCAGGCAGTGCGGCACGAGCTTTTG
GACAAGCTGGTCATCCTCAAGTTGAACGGTGGCTTGGGTACCACAATGGG
GTGCACCTTGCCTAAGTCAGCGATTGAAGTGCGACAAGAGATGACATTTT
TAGACATGACGGTGCGACAAGTAGAATATTTGAATTCATTGTACGGGGTT
GATGTACCGTTGCTACTTATGAACTCGTTCAAGACTGATGCCGTCACCTT
ACGGCTCCTTAACAAGTACCGGCAGCACAACCTGACCATTCACACCTTTA
TGCAGTCCTGCTTTCCCCGCATTGTCAAGGACACTTTGCAACCGTTGCCC
CAAGGGCCATTTAACGAAGAAAATGAGGCAGATTGGTATCCACCAGGGCA
CGGGGATCTGTACCAAAGCCTCTTCCAATCAGGCTTGTTGGATAATCTGA
TTGAGCAGGGGAAAGAGTACATGTTTATCAGCAACGTAGACAACCTGGGA
GCAACGGTTGATTTGAATTTGCTCTATTACATTGTTGATAACGATATCGA
ATTCTGCACGGGCGTTGTGGACCTGACCCGGGCTGATCAGGACGGAGGGG
TGCTAACTGCCTACAAAGGCAAGCGCTTGGTGGTGGAGCTTTCCCAACTG
CCCAAGCAGCATTTGGAAACGGTGGCCAAAAAATTCACGGCCTTCCATAC
CAACAACGTATGGATCAACCTCCGTGCCCTTCATGCCTTGCTTGTGGAAG
AAAAGCTCTCCATTGACCTGGTCACGCACGAGCGCGTTGTGGACCGCCTC
AAAATTCTCCAGCTCGAAACCACCATTGGCAGTGTCATTAAAGATTTCAC
GAAGGTCCTCACAATGAAAGTTCCCCGCTCCCGCTACCTCCCAGTTAAGT
CCACGTCCGATCTCTTCCTTGTCCAATCTTCCCTCTACTCCGTGTCACGT
GGAATGCTATTGCCCAACCCGGGGCGGCCATACGCGAAAGATAAAGTGCC
TATCATAAAACTGGGCGAGCAATTTGTGCATATCCAGGATTATCTCGAAC
GGATTCCTCATGGCGTCCCCGATTTGGTGGCTCTGGAGCATTTGACAGTT
GCGGGGGATGTGGTTTTCGGGGCGAACGTCACGTTGAAAGGGACGGTCAT
TATTGTGGCTAATGAGGGCTCGGTGATCATGATCCCGGATGGAACAGTAT
TGGAGGACAAGGTCGTTACGGGTAATTTGAGGATTTTAGACCATTGATCA
TATTCACTGAGTGGGGAGGGGAACACATATCAGAAGCATTAAAGTCACCG
TATGTGTCGTGTGTCT
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protein sequence of NO02G01170.1

>NO02G01170.1-protein ID=NO02G01170.1-protein|Name=NO02G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MPRALLHKVEDKYLRGTASHSVEETMREALVADNILPAPQRKNFMKLFGK
FLEFRSRPPIDWTQVEPVEPTKLMDWEALPECPEDQAVRHELLDKLVILK
LNGGLGTTMGCTLPKSAIEVRQEMTFLDMTVRQVEYLNSLYGVDVPLLLM
NSFKTDAVTLRLLNKYRQHNLTIHTFMQSCFPRIVKDTLQPLPQGPFNEE
NEADWYPPGHGDLYQSLFQSGLLDNLIEQGKEYMFISNVDNLGATVDLNL
LYYIVDNDIEFCTGVVDLTRADQDGGVLTAYKGKRLVVELSQLPKQHLET
VAKKFTAFHTNNVWINLRALHALLVEEKLSIDLVTHERVVDRLKILQLET
TIGSVIKDFTKVLTMKVPRSRYLPVKSTSDLFLVQSSLYSVSRGMLLPNP
GRPYAKDKVPIIKLGEQFVHIQDYLERIPHGVPDLVALEHLTVAGDVVFG
ANVTLKGTVIIVANEGSVIMIPDGTVLEDKVVTGNLRILDH*
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mRNA from alignment at chr2:363318..365033+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01170.1 ID=NO02G01170.1|Name=NO02G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1716bp|location=Sequence derived from alignment at chr2:363318..365033+ (Nannochloropsis oceanica)
AATACACAGTGAAAACTTCCTGGTGCAGCCTGATTGTGTGTCTAAACCCC
ATCTTATCCCTATCACTGTCGTTCCTGTGCATCCAACCACTCCACTCACG
CAGCACCTCGAGCGTCAAGCCATATCTCAATCCCGCACATATCTCTCCCT
GACACAAGACACGAGATCACCATGCCGCGCGCACTCCTCCATAAGGTGGA
GGACAAGTATTTGCGGGGCACGGCTAGTCATTCAGTGGAAGAAACCATGA
GGGAAGCGCTCGTGGCAGACAACATTTTGCCTGCGCCGCAGCGCAAGAAT
TTTATGAAGCTGTTTGGCAAGTTTTTGGAGTTCCGATCACGCCCACCCAT
TGATTGGACGCAAGTCGAGCCTGTGGAGCCCACAAAGTTGATGGACTGGG
AAGCATTGCCTGAATGCCCGGAAGACCAGGCAGTGCGGCACGAGCTTTTG
GACAAGCTGGTCATCCTCAAGTTGAACGGTGGCTTGGGTACCACAATGGG
GTGCACCTTGCCTAAGTCAGCGATTGAAGTGCGACAAGAGATGACATTTT
TAGACATGACGGTGCGACAAGTAGAATATTTGAATTCATTGTACGGGGTT
GATGTACCGTTGCTACTTATGAACTCGTTCAAGACTGATGCCGTCACCTT
ACGGCTCCTTAACAAGTACCGGCAGCACAACCTGACCATTCACACCTTTA
TGCAGTCCTGCTTTCCCCGCATTGTCAAGGACACTTTGCAACCGTTGCCC
CAAGGGCCATTTAACGAAGAAAATGAGGCAGATTGGTATCCACCAGGGCA
CGGGGATCTGTACCAAAGCCTCTTCCAATCAGGCTTGTTGGATAATCTGA
TTGAGCAGGGGAAAGAGTACATGTTTATCAGCAACGTAGACAACCTGGGA
GCAACGGTTGATTTGAATTTGCTCTATTACATTGTTGATAACGATATCGA
ATTCTGCACGGGCGTTGTGGACCTGACCCGGGCTGATCAGGACGGAGGGG
TGCTAACTGCCTACAAAGGCAAGCGCTTGGTGGTGGAGCTTTCCCAACTG
CCCAAGCAGCATTTGGAAACGGTGGCCAAAAAATTCACGGCCTTCCATAC
CAACAACGTATGGATCAACCTCCGTGCCCTTCATGCCTTGCTTGTGGAAG
AAAAGCTCTCCATTGACCTGGTCACGCACGAGCGCGTTGTGGACCGCCTC
AAAATTCTCCAGCTCGAAACCACCATTGGCAGTGTCATTAAAGATTTCAC
GAAGGTCCTCACAATGAAAGTTCCCCGCTCCCGCTACCTCCCAGTTAAGT
CCACGTCCGATCTCTTCCTTGTCCAATCTTCCCTCTACTCCGTGTCACGT
GGAATGCTATTGCCCAACCCGGGGCGGCCATACGCGAAAGATAAAGTGCC
TATCATAAAACTGGGCGAGCAATTTGTGCATATCCAGGATTATCTCGAAC
GGATTCCTCATGGCGTCCCCGATTTGGTGGCTCTGGAGCATTTGACAGTT
GCGGGGGATGTGGTTTTCGGGGCGAACGTCACGTTGAAAGGGACGGTCAT
TATTGTGGCTAATGAGGGCTCGGTGATCATGATCCCGGATGGAACAGTAT
TGGAGGACAAGGTCGTTACGGGTAATTTGAGGATTTTAGACCATTGATCA
TATTCACTGAGTGGGGAGGGGAACACATATCAGAAGCATTAAAGTCACCG
TATGTGTCGTGTGTCT
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Coding sequence (CDS) from alignment at chr2:363318..365033+

>NO02G01170.1 ID=NO02G01170.1|Name=NO02G01170.1|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at chr2:363318..365033+ (Nannochloropsis oceanica)
ATGCCGCGCGCACTCCTCCATAAGGTGGAGGACAAGTATTTGCGGGGCAC
GGCTAGTCATTCAGTGGAAGAAACCATGAGGGAAGCGCTCGTGGCAGACA
ACATTTTGCCTGCGCCGCAGCGCAAGAATTTTATGAAGCTGTTTGGCAAG
TTTTTGGAGTTCCGATCACGCCCACCCATTGATTGGACGCAAGTCGAGCC
TGTGGAGCCCACAAAGTTGATGGACTGGGAAGCATTGCCTGAATGCCCGG
AAGACCAGGCAGTGCGGCACGAGCTTTTGGACAAGCTGGTCATCCTCAAG
TTGAACGGTGGCTTGGGTACCACAATGGGGTGCACCTTGCCTAAGTCAGC
GATTGAAGTGCGACAAGAGATGACATTTTTAGACATGACGGTGCGACAAG
TAGAATATTTGAATTCATTGTACGGGGTTGATGTACCGTTGCTACTTATG
AACTCGTTCAAGACTGATGCCGTCACCTTACGGCTCCTTAACAAGTACCG
GCAGCACAACCTGACCATTCACACCTTTATGCAGTCCTGCTTTCCCCGCA
TTGTCAAGGACACTTTGCAACCGTTGCCCCAAGGGCCATTTAACGAAGAA
AATGAGGCAGATTGGTATCCACCAGGGCACGGGGATCTGTACCAAAGCCT
CTTCCAATCAGGCTTGTTGGATAATCTGATTGAGCAGGGGAAAGAGTACA
TGTTTATCAGCAACGTAGACAACCTGGGAGCAACGGTTGATTTGAATTTG
CTCTATTACATTGTTGATAACGATATCGAATTCTGCACGGGCGTTGTGGA
CCTGACCCGGGCTGATCAGGACGGAGGGGTGCTAACTGCCTACAAAGGCA
AGCGCTTGGTGGTGGAGCTTTCCCAACTGCCCAAGCAGCATTTGGAAACG
GTGGCCAAAAAATTCACGGCCTTCCATACCAACAACGTATGGATCAACCT
CCGTGCCCTTCATGCCTTGCTTGTGGAAGAAAAGCTCTCCATTGACCTGG
TCACGCACGAGCGCGTTGTGGACCGCCTCAAAATTCTCCAGCTCGAAACC
ACCATTGGCAGTGTCATTAAAGATTTCACGAAGGTCCTCACAATGAAAGT
TCCCCGCTCCCGCTACCTCCCAGTTAAGTCCACGTCCGATCTCTTCCTTG
TCCAATCTTCCCTCTACTCCGTGTCACGTGGAATGCTATTGCCCAACCCG
GGGCGGCCATACGCGAAAGATAAAGTGCCTATCATAAAACTGGGCGAGCA
ATTTGTGCATATCCAGGATTATCTCGAACGGATTCCTCATGGCGTCCCCG
ATTTGGTGGCTCTGGAGCATTTGACAGTTGCGGGGGATGTGGTTTTCGGG
GCGAACGTCACGTTGAAAGGGACGGTCATTATTGTGGCTAATGAGGGCTC
GGTGATCATGATCCCGGATGGAACAGTATTGGAGGACAAGGTCGTTACGG
GTAATTTGAGGATTTTAGACCATTGA
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Synonyms
Publications