NO02G01140.1, NO02G01140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01140.1
Unique NameNO02G01140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1476
Alignment locationchr2:358581..360362 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:358581..360362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01140.1 vs.
Match: EWM30542.1 (cytochrome p450 hydroxylase [Nannochloropsis gaditana])

HSP 1 Score: 901.7 bits (2329), Expect = 9.700e-259
Identity = 450/491 (91.65%), Postives = 467/491 (95.11%), Query Frame = 0 
Query:    1 MTLKVEELSTPQLITMFLITVMGGYFVVVHIIFFLMDVIKLSKIPGPVPVPVLGNLYDRMALTSFIGWLSKLRRKYGKIYRVFTGSRAYVVLMDKVAAREALSDPRTFVKGPDYKEKFSFVFGDGLVTSVGEKHKTDRALFAKYFTQKKIEMHLPVLCEQTLKAINSEMEPHVGQGQGVVDLEHFFSILAFKMFCRFAINHEFVESEVWSELTSRGSNIIGESIVLGIPVTTWIPRVKKLLEDTERFHRCCDPLIDARILAHSKGEEMVDDPLTVMVQEKMTRKQMYSHLVTMLAAGHDTTAFCTCYTLFLLAKNPKIQAKLKAEIKRVMGTRTNITPEDIAQLTYAKNCFQESLRIYSVVPHVTRVCIRDTKLSCGVTVPANTEVLVPICLLNRDTDEWGAPIDAFDPDRFEGITRESPSKGYFPFGYSTRSCIGATLALIEGTVMITLLAQRYTFLEEPSFKLKLKSGITMVSSNGVKVRVQRDMDYAS 492
            M LKV+ELS  QLITMF+I  +  YF+V+H++FFLMDVIKLSKIPGPVPVPVLGNLYDRMALTSFIGWLSKLRRKYGKIYRVFTGSRAYVVLMDKVAAREALSDPRTFVKGPDYK+KFSFVFGDGLVTSVG+KHK DRALFAKYFTQKKIE HLPVLCEQTL+AIN+EMEPHVGQ   VVDLEHFFSILAFKMFCRFAINHEF +SEVWSELTSRGSNIIGESIVLGIPVTTWIPRVKKLLED ERFHR CDPLIDARILA  KGEEMVDDPLTVMVQEKMTRKQMYSHLVTMLAAGHDTTAFCTCYTLFLLAKNPKIQAKLKAE+KRV+G RTNITPEDI+QLTYAKNCFQESLRIYSVVPHVTRVCIRDTKLS GVTVPANTEVLVPICLLNRDTDEWG PIDAFDPDRFEGITRESPSKGYFPFGYSTRSCIGATLAL EGTVMITLLAQR+TF EEPSFKLKLKSGITMVSSNGVKVRV+RD  YAS
Sbjct:    1 MALKVDELSPSQLITMFIIMSIITYFIVIHVVFFLMDVIKLSKIPGPVPVPVLGNLYDRMALTSFIGWLSKLRRKYGKIYRVFTGSRAYVVLMDKVAAREALSDPRTFVKGPDYKDKFSFVFGDGLVTSVGDKHKADRALFAKYFTQKKIETHLPVLCEQTLQAINTEMEPHVGQ---VVDLEHFFSILAFKMFCRFAINHEFADSEVWSELTSRGSNIIGESIVLGIPVTTWIPRVKKLLEDAERFHRVCDPLIDARILALQKGEEMVDDPLTVMVQEKMTRKQMYSHLVTMLAAGHDTTAFCTCYTLFLLAKNPKIQAKLKAEVKRVLGNRTNITPEDISQLTYAKNCFQESLRIYSVVPHVTRVCIRDTKLSSGVTVPANTEVLVPICLLNRDTDEWGEPIDAFDPDRFEGITRESPSKGYFPFGYSTRSCIGATLALTEGTVMITLLAQRFTFYEEPSFKLKLKSGITMVSSNGVKVRVERDTSYAS 488
The following BLAST results are available for this feature:
BLAST of NO02G01140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30542.19.700e-25991.65cytochrome p450 hydroxylase [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01140NO02G01140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01140.1NO02G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01140.1.cds1NO02G01140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01140.1.cds2NO02G01140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01140.1.cds3NO02G01140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01140.1 ID=NO02G01140.1|Name=NO02G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1476bp
ATGACGCTCAAGGTGGAGGAGTTGAGCACACCTCAACTCATAACAATGTT
CCTCATCACGGTCATGGGCGGCTACTTTGTGGTGGTGCACATAATCTTTT
TCCTGATGGATGTGATCAAGCTCAGCAAGATTCCGGGTCCGGTCCCCGTG
CCTGTCCTCGGCAATCTCTACGATCGCATGGCCCTCACCTCGTTCATCGG
CTGGCTCAGTAAGCTCCGCCGCAAATATGGGAAGATATATCGGGTCTTCA
CAGGCTCTCGGGCGTATGTAGTGCTGATGGACAAGGTGGCCGCTCGCGAG
GCTTTGAGCGATCCTCGTACATTTGTTAAGGGACCGGATTACAAGGAGAA
ATTCTCGTTCGTCTTTGGTGATGGCTTGGTGACGAGCGTGGGGGAAAAGC
ACAAGACCGACCGGGCATTGTTCGCCAAGTATTTCACGCAGAAAAAGATT
GAAATGCATCTGCCGGTGTTGTGTGAGCAGACGCTCAAGGCGATCAACTC
TGAGATGGAGCCTCATGTGGGACAAGGGCAGGGAGTTGTTGATTTGGAGC
ATTTCTTCTCTATTTTGGCCTTCAAGATGTTTTGCCGGTTTGCGATCAAC
CACGAGTTTGTGGAGTCAGAAGTTTGGAGTGAATTGACGTCGCGGGGGTC
GAATATCATCGGGGAGAGTATTGTGTTGGGCATACCAGTGACCACCTGGA
TCCCGCGTGTGAAGAAGCTCTTAGAGGACACGGAGAGGTTCCACAGGTGC
TGCGACCCGTTGATTGACGCAAGGATTCTGGCGCATAGCAAGGGGGAAGA
GATGGTGGACGACCCCTTGACGGTGATGGTGCAGGAGAAGATGACCCGGA
AGCAGATGTACAGCCACTTGGTGACGATGTTGGCGGCGGGGCACGACACA
ACAGCATTTTGCACTTGTTATACCCTCTTTTTGTTGGCAAAGAACCCCAA
AATTCAGGCGAAGCTCAAGGCCGAGATCAAGCGGGTGATGGGTACACGGA
CAAACATCACGCCTGAGGACATTGCGCAGTTGACCTATGCCAAAAATTGC
TTCCAGGAGTCGCTGCGCATTTACTCGGTCGTGCCCCATGTGACCCGTGT
CTGTATCCGAGACACTAAGCTCTCGTGTGGCGTGACGGTCCCTGCCAACA
CGGAGGTGCTCGTGCCCATTTGTCTGCTGAACCGCGATACGGACGAGTGG
GGCGCACCTATCGATGCCTTTGACCCTGATCGCTTCGAGGGTATCACTCG
GGAGTCTCCTTCCAAGGGCTACTTCCCCTTTGGGTACTCGACGCGGTCCT
GCATTGGTGCGACGTTGGCGTTGATCGAGGGAACAGTAATGATCACGTTG
TTGGCCCAGCGGTATACGTTCTTGGAGGAGCCGTCATTCAAGCTTAAATT
GAAAAGTGGGATTACGATGGTGTCATCGAATGGAGTCAAGGTCCGCGTGC
AACGGGACATGGACTATGCATCGTAG
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protein sequence of NO02G01140.1

>NO02G01140.1-protein ID=NO02G01140.1-protein|Name=NO02G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MTLKVEELSTPQLITMFLITVMGGYFVVVHIIFFLMDVIKLSKIPGPVPV
PVLGNLYDRMALTSFIGWLSKLRRKYGKIYRVFTGSRAYVVLMDKVAARE
ALSDPRTFVKGPDYKEKFSFVFGDGLVTSVGEKHKTDRALFAKYFTQKKI
EMHLPVLCEQTLKAINSEMEPHVGQGQGVVDLEHFFSILAFKMFCRFAIN
HEFVESEVWSELTSRGSNIIGESIVLGIPVTTWIPRVKKLLEDTERFHRC
CDPLIDARILAHSKGEEMVDDPLTVMVQEKMTRKQMYSHLVTMLAAGHDT
TAFCTCYTLFLLAKNPKIQAKLKAEIKRVMGTRTNITPEDIAQLTYAKNC
FQESLRIYSVVPHVTRVCIRDTKLSCGVTVPANTEVLVPICLLNRDTDEW
GAPIDAFDPDRFEGITRESPSKGYFPFGYSTRSCIGATLALIEGTVMITL
LAQRYTFLEEPSFKLKLKSGITMVSSNGVKVRVQRDMDYAS*
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mRNA from alignment at chr2:358581..360362+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01140.1 ID=NO02G01140.1|Name=NO02G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1782bp|location=Sequence derived from alignment at chr2:358581..360362+ (Nannochloropsis oceanica)
ATGACGCTCAAGGTGGAGGAGTTGAGCACACCTCAACTCATAACAATGGT
ATGTCTTATCTCGCGGGGCCTGGCAAGGGTGGATGGTGGGCAGCGAAGGG
GAAAGAACACGATTTCTGGAATTAGTGCTTGACATGCCCCCCTGACCCCC
CCCTTTTCCCATTCCCGCCTTCCCTCTAGTTCCTCATCACGGTCATGGGC
GGCTACTTTGTGGTGGTGCACATAATCTTTTTCCTGATGGATGTGATCAA
GCTCAGCAAGATTCCGGGTCCGGTCCCCGTGCCTGTCCTCGGCAATCTCT
ACGATCGCATGGCCCTCACCTCGGTACGTATGGAACGCATCGGTGGGGGC
GGTGTGCCATTGAATACATTTCTGCTTATAATAATGTCCCTGAACATTCT
TATTGTCCCTCCTCAAGCACATGGTCATCCCGGTCGCCGCTTTTCCTCGT
CAGACACTCACCCTCCCCTCCTTCTCCCCTCCTTGTCACCCCAAACAGTT
CATCGGCTGGCTCAGTAAGCTCCGCCGCAAATATGGGAAGATATATCGGG
TCTTCACAGGCTCTCGGGCGTATGTAGTGCTGATGGACAAGGTGGCCGCT
CGCGAGGCTTTGAGCGATCCTCGTACATTTGTTAAGGGACCGGATTACAA
GGAGAAATTCTCGTTCGTCTTTGGTGATGGCTTGGTGACGAGCGTGGGGG
AAAAGCACAAGACCGACCGGGCATTGTTCGCCAAGTATTTCACGCAGAAA
AAGATTGAAATGCATCTGCCGGTGTTGTGTGAGCAGACGCTCAAGGCGAT
CAACTCTGAGATGGAGCCTCATGTGGGACAAGGGCAGGGAGTTGTTGATT
TGGAGCATTTCTTCTCTATTTTGGCCTTCAAGATGTTTTGCCGGTTTGCG
ATCAACCACGAGTTTGTGGAGTCAGAAGTTTGGAGTGAATTGACGTCGCG
GGGGTCGAATATCATCGGGGAGAGTATTGTGTTGGGCATACCAGTGACCA
CCTGGATCCCGCGTGTGAAGAAGCTCTTAGAGGACACGGAGAGGTTCCAC
AGGTGCTGCGACCCGTTGATTGACGCAAGGATTCTGGCGCATAGCAAGGG
GGAAGAGATGGTGGACGACCCCTTGACGGTGATGGTGCAGGAGAAGATGA
CCCGGAAGCAGATGTACAGCCACTTGGTGACGATGTTGGCGGCGGGGCAC
GACACAACAGCATTTTGCACTTGTTATACCCTCTTTTTGTTGGCAAAGAA
CCCCAAAATTCAGGCGAAGCTCAAGGCCGAGATCAAGCGGGTGATGGGTA
CACGGACAAACATCACGCCTGAGGACATTGCGCAGTTGACCTATGCCAAA
AATTGCTTCCAGGAGTCGCTGCGCATTTACTCGGTCGTGCCCCATGTGAC
CCGTGTCTGTATCCGAGACACTAAGCTCTCGTGTGGCGTGACGGTCCCTG
CCAACACGGAGGTGCTCGTGCCCATTTGTCTGCTGAACCGCGATACGGAC
GAGTGGGGCGCACCTATCGATGCCTTTGACCCTGATCGCTTCGAGGGTAT
CACTCGGGAGTCTCCTTCCAAGGGCTACTTCCCCTTTGGGTACTCGACGC
GGTCCTGCATTGGTGCGACGTTGGCGTTGATCGAGGGAACAGTAATGATC
ACGTTGTTGGCCCAGCGGTATACGTTCTTGGAGGAGCCGTCATTCAAGCT
TAAATTGAAAAGTGGGATTACGATGGTGTCATCGAATGGAGTCAAGGTCC
GCGTGCAACGGGACATGGACTATGCATCGTAG
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Coding sequence (CDS) from alignment at chr2:358581..360362+

>NO02G01140.1 ID=NO02G01140.1|Name=NO02G01140.1|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at chr2:358581..360362+ (Nannochloropsis oceanica)
ATGACGCTCAAGGTGGAGGAGTTGAGCACACCTCAACTCATAACAATGTT
CCTCATCACGGTCATGGGCGGCTACTTTGTGGTGGTGCACATAATCTTTT
TCCTGATGGATGTGATCAAGCTCAGCAAGATTCCGGGTCCGGTCCCCGTG
CCTGTCCTCGGCAATCTCTACGATCGCATGGCCCTCACCTCGTTCATCGG
CTGGCTCAGTAAGCTCCGCCGCAAATATGGGAAGATATATCGGGTCTTCA
CAGGCTCTCGGGCGTATGTAGTGCTGATGGACAAGGTGGCCGCTCGCGAG
GCTTTGAGCGATCCTCGTACATTTGTTAAGGGACCGGATTACAAGGAGAA
ATTCTCGTTCGTCTTTGGTGATGGCTTGGTGACGAGCGTGGGGGAAAAGC
ACAAGACCGACCGGGCATTGTTCGCCAAGTATTTCACGCAGAAAAAGATT
GAAATGCATCTGCCGGTGTTGTGTGAGCAGACGCTCAAGGCGATCAACTC
TGAGATGGAGCCTCATGTGGGACAAGGGCAGGGAGTTGTTGATTTGGAGC
ATTTCTTCTCTATTTTGGCCTTCAAGATGTTTTGCCGGTTTGCGATCAAC
CACGAGTTTGTGGAGTCAGAAGTTTGGAGTGAATTGACGTCGCGGGGGTC
GAATATCATCGGGGAGAGTATTGTGTTGGGCATACCAGTGACCACCTGGA
TCCCGCGTGTGAAGAAGCTCTTAGAGGACACGGAGAGGTTCCACAGGTGC
TGCGACCCGTTGATTGACGCAAGGATTCTGGCGCATAGCAAGGGGGAAGA
GATGGTGGACGACCCCTTGACGGTGATGGTGCAGGAGAAGATGACCCGGA
AGCAGATGTACAGCCACTTGGTGACGATGTTGGCGGCGGGGCACGACACA
ACAGCATTTTGCACTTGTTATACCCTCTTTTTGTTGGCAAAGAACCCCAA
AATTCAGGCGAAGCTCAAGGCCGAGATCAAGCGGGTGATGGGTACACGGA
CAAACATCACGCCTGAGGACATTGCGCAGTTGACCTATGCCAAAAATTGC
TTCCAGGAGTCGCTGCGCATTTACTCGGTCGTGCCCCATGTGACCCGTGT
CTGTATCCGAGACACTAAGCTCTCGTGTGGCGTGACGGTCCCTGCCAACA
CGGAGGTGCTCGTGCCCATTTGTCTGCTGAACCGCGATACGGACGAGTGG
GGCGCACCTATCGATGCCTTTGACCCTGATCGCTTCGAGGGTATCACTCG
GGAGTCTCCTTCCAAGGGCTACTTCCCCTTTGGGTACTCGACGCGGTCCT
GCATTGGTGCGACGTTGGCGTTGATCGAGGGAACAGTAATGATCACGTTG
TTGGCCCAGCGGTATACGTTCTTGGAGGAGCCGTCATTCAAGCTTAAATT
GAAAAGTGGGATTACGATGGTGTCATCGAATGGAGTCAAGGTCCGCGTGC
AACGGGACATGGACTATGCATCGTAG
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Synonyms
Publications