NO02G01070.2, NO02G01070.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01070.2
Unique NameNO02G01070.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2163
Alignment locationchr2:334161..336823 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:334161..336823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01070.2 vs.
Match: EWM30584.1 (Cell differentiation, Rcd1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 488.4 bits (1256), Expect = 1.600e-134
Identity = 248/266 (93.23%), Postives = 260/266 (97.74%), Query Frame = 0 
Query:   32 LPPSLPSTQSTQRETALMELSKKREVYPDLAPILWHSVGTMAALLQEIIAIYPMLSPPTLTAQASNRVCNALALLQCVASHAETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKMDDSEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKILLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFAQCLKDDVTINRWLANLLYNISEG 298
            +P  L  ++ ++RETALMELSKKREVYPDLAP+LWHSVGTMAALLQEIIAIYPML+PPTLTAQASNRVCNALALLQCVASH ETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVK+DD+EVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQK+LLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTF+QCLKDDVTINRWLANLLYNI+EG
Sbjct:   34 IPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEG 299
The following BLAST results are available for this feature:
BLAST of NO02G01070.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30584.11.600e-13493.23Cell differentiation, Rcd1-like protein [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01070NO02G01070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01070.2NO02G01070.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01070.2.cds1NO02G01070.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G01070.2.cds2NO02G01070.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01070.2 ID=NO02G01070.2|Name=NO02G01070.2|organism=Nannochloropsis oceanica|type=mRNA|length=2163bp
GTACCGTTGGTAGCAAACCCTTGTCAGTGTTGCGTAACAGCGCGTCTGTG
TGGAGGGGTGGAAAGAGGGGAGACGTGGAAAGCATTGAGAGCGTACACAT
GAGTGCTACGAAGGCATAAATTAGCACGCAAGGGCGTGTCAGTTGAATAG
AAGGAACAGAAGCTACAAGATGAAGAAGCAATCACAACACAGGCCAGCAG
GCTCGCCAGTGGCTGGACAATCCAGCTCGCTATGGTGAGAATTTAATCAA
GCCTTCATGTCCGTCAAATTAGGACATTTACGCTCTTGAAAGACCGATCG
ACGGCAAGCGGGCACGCGATGGTCCGAAAATTCATGCTTTTTTTCCGTCT
CCCTGAGACATTTTACTACTGCATGACACAAGGGCAAGCATGCCAGGAAT
CCGAGGTAGAGCACCACCGCCAAAGCCTTTTTTTTTGTTTTTTTTTATTA
AGAAAGTCAACGCAAATGACTGCATCGCTCATAGCATGCCCGTGTAATAA
GGAGTTTGATAAATCATTCAAGATACCCTTCATATTAGTGCCCCGGACAT
AACGCGAAGTTTTTGCAGTGCCGTCGTTGGAGATCCCCACTTGGCACGCT
GAGCGCGAAAAACGGAGAGGGGAGGGTCGGGGGGGAAAGACTCGGGAGGA
GGACTTGTGTCTTCTGGGAGATAAAGGTATTAACGACCACTCACCGTTCT
CTGCGTTGTATTCCACACACTGACACATACCCGACCGTGTGGCAGGCTGG
CCGGTGCTCCACGCCTCGCCCTTTATTCAGTTTGCGGTCCAAAGAACACT
CTTGGCATCATCATCATCATCGACATAATCCTCATAACTTCTCCACAACA
ATGCTGGGCATGAACCCTTTGAGCTCCTTAGGCGGAGTTGGAGTCGGTCC
GTCCGCACAAACGGGTGGCTTGACCGGTGGCGGCCCCGGAGGATATGAGG
AATTGACGCCGTTGGTCATGCAGTTGTCGGAGCCGGACAAGGTAAGGAAC
GAAGCAAAGCAAGCAAAAAAAAAAGGGCAGACAGTATGAGAGAGATTGGA
AAGTGAGAGTGGAGAGACAGGGGAACGAGGCAAATGAATGGCCGTCAAGT
ATCTTGCATCCCCTCCCACACACTGTACGTTTTCCCTTCTCTCCCTCCAT
CCCTCCCTCCTTCCCTCCCTCCTTCCATACCTCCCTCCCTCCCTCCCCTC
CACCCAATCCACTCAGCGCGAAACCGCCCTGATGGAATTGAGCAAGAAGC
GTGAGGTCTATCCGGACCTGGCTCCCATCCTCTGGCACTCTGTCGGAACC
ATGGCTGCCCTCCTTCAGGAAATTATTGCCATTTACCCTATGCTTTCCCC
CCCCACCCTAACGGCCCAAGCCAGCAACCGTGTATGCAACGCCCTGGCCT
TGCTGCAGTGTGTGGCGAGCCATGCTGAGACCAGGGGACTCTTTTTGCAA
GCGCACATTCCCATGTATCTGTACCCTTTCCTTAATACGGTCATGAGCAA
AAGTCGACCTTTCGAGTACCTGCGTCTCACGTCTCTAGGCGTGATAGGGG
CCTTGGTGAAGATGGACGATTCAGAGGTCATCTCCTTCCTCCTTCAGACC
GAAATAATTCCCCTGTGCCTCCGAATCATGGAGACGGGAAATGAATTGAG
CAAGACAGTGGCCACTTTTATCGTACAAAAAATCCTGCTTGATGAGATGG
GATTGAACTATATCTGCGCCACGGCCGAGCGCTTCTTTGCCGTGTCCACA
GTGCTGAGTAACATGGTGCAAGCGCTGATAGAGGTTCCTTCAGTGAGGCT
ACTCAAGCATATTGTCCGTTGTTATTTACGCCTGTCGGAGAATCCGAGAG
CGCGTGATGCGCTGCGACAGTGCTTGCCCGACGCTTTGAGGAGTGACCAG
ACGTTTGCGCAGTGTCTGAAGGATGATGTGACGATCAATCGCTGGTTGGC
GAACTTGCTGTATAACATTAGCGAGGGAGTTTAGTCTCGTGATAGGCATA
GACGGAGGGAGGAGTAAGTGGGGAGGAGTGCTGAGAGGAGGGGGAGGGAG
GGAGGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAAAGTGACAGGGAATG
TATAGGGAAAATCTGCCAAAGAGACAAAAGAAAAGAGAAGCAAAATAACT
TACATGCATAGAG
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protein sequence of NO02G01070.2

>NO02G01070.2-protein ID=NO02G01070.2-protein|Name=NO02G01070.2|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MAVKYLASPPTHCTFSLLSLHPSLLPSLLPYLPPSLPSTQSTQRETALME
LSKKREVYPDLAPILWHSVGTMAALLQEIIAIYPMLSPPTLTAQASNRVC
NALALLQCVASHAETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSL
GVIGALVKMDDSEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKIL
LDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLS
ENPRARDALRQCLPDALRSDQTFAQCLKDDVTINRWLANLLYNISEGV*
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mRNA from alignment at chr2:334161..336823+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01070.2 ID=NO02G01070.2|Name=NO02G01070.2|organism=Nannochloropsis oceanica|type=mRNA|length=2663bp|location=Sequence derived from alignment at chr2:334161..336823+ (Nannochloropsis oceanica)
GTACCGTTGGTAGCAAACCCTTGTCAGTGTTGCGTAACAGCGCGTCTGTG
TGGAGGGGTGGAAAGAGGGGAGACGTGGAAAGCATTGAGAGCGTACACAT
GAGTGCTACGAAGGCATAAATTAGCACGCAAGGGCGTGTCAGTTGAATAG
AAGGAACAGAAGCTACAAGATGAAGAAGCAATCACAACACAGGCCAGCAG
GCTCGCCAGTGGCTGGACAATCCAGCTCGCTATGGTGAGAATTTAATCAA
GCCTTCATGTCCGTCAAATTAGGACATTTACGCTCTTGAAAGACCGATCG
ACGGCAAGCGGGCACGCGATGGTCCGAAAATTCATGCTTTTTTTCCGTCT
CCCTGAGACATTTTACTACTGCATGACACAAGGGCAAGCATGCCAGGAAT
CCGAGGTAGAGCACCACCGCCAAAGCCTTTTTTTTTGTTTTTTTTTATTA
AGAAAGTCAACGCAAATGACTGCATCGCTCATAGCATGCCCGTGTAATAA
GGAGTTTGATAAATCATTCAAGATACCCTTCATATTAGTGCCCCGGACAT
AACGCGAAGTTTTTGCAGTGCCGTCGTTGGAGATCCCCACTTGGCACGCT
GAGCGCGAAAAACGGAGAGGGGAGGGTCGGGGGGGAAAGACTCGGGAGGA
GGACTTGTGTCTTCTGGGAGATAAAGGTATTAACGACCACTCACCGTTCT
CTGCGTTGTATTCCACACACTGACACATACCCGACCGTGTGGCAGGCTGG
CCGGTGCTCCACGCCTCGCCCTTTATTCAGTTTGCGGTCCAAAGAACACT
CTTGGCATCATCATCATCATCGACATAATCCTCATAACTTCTCCACAACA
ATGCTGGGCATGAACCCTTTGAGCTCCTTAGGCGGAGGTACGTGCGGCGA
AGCCAAATAAAGAGGATGAGCCGAAGGAGATATGGCGGTAGGGGAAGGAG
TGGGCAGGGTGTGGCTTGGCATGCCCTTCCGCGTATCTATCTCCCAGTGG
AAGGGTAAAGACAAGAGGGGGGTCGAAAAGGCGGGGCAGGCACATGCATG
TGCGCTTCTACGCTTTCCCTGTGATCCCCAACCCCCTGCTCTCTCATTCA
CTCCTCTCCTTAAATCCTCAATCGTCATTGTCGACCGACTAATGTCTAGT
GCTACCATGCTCTTCACTCACACCAACCACCCTCCGTCAAATTAATATGC
ATACATAGTTGGAGTCGGTCCGTCCGCACAAACGGGTGGCTTGACCGGTG
GCGGCCCCGGAGGATATGAGGAATTGACGCCGTTGGTCATGCAGTTGTCG
GAGCCGGACAAGGTAAGGAACGAAGCAAAGCAAGCAAAAAAAAAAGGGCA
GACAGTATGAGAGAGATTGGAAAGTGAGAGTGGAGAGACAGGGGAACGAG
GCAAATGAATGGCCGTCAAGTATCTTGCATCCCCTCCCACACACTGTACG
TTTTCCCTTCTCTCCCTCCATCCCTCCCTCCTTCCCTCCCTCCTTCCATA
CCTCCCTCCCTCCCTCCCCTCCACCCAATCCACTCAGCGCGAAACCGCCC
TGATGGAATTGAGCAAGAAGCGTGAGGTCTATCCGGACCTGGCTCCCATC
CTCTGGCACTCTGTCGGAACCATGGCTGCCCTCCTTCAGGAAATTATTGC
CATTTACCCTATGCTTTCCCCCCCCACCCTAACGGCCCAAGCCAGCAACC
GTGTATGCAACGCCCTGGCCTTGCTGCAGTGTGTGGCGAGCCATGCTGAG
ACCAGGGGACTCTTTTTGCAAGGTCATGATTAAGTGGGGGGAGTGGGAGG
GGAGGGAGGAGGGAGGAGGTAGAAGAGGGGCGCGCACCAGGGCAGGCCTT
GTAAATGCACCTGAATTTAAAGCTCTCGTTCTCAGTGAACTAATATTCCC
ACGCCCTCTCTCTCTTCCTCCCACCCACTTGATCGCCTCTTTCTCCCTTA
GCGCACATTCCCATGTATCTGTACCCTTTCCTTAATACGGTCATGAGCAA
AAGTCGACCTTTCGAGTACCTGCGTCTCACGTCTCTAGGCGTGATAGGGG
CCTTGGTGAAGATGGACGATTCAGAGGTCATCTCCTTCCTCCTTCAGACC
GAAATAATTCCCCTGTGCCTCCGAATCATGGAGACGGGAAATGAATTGAG
CAAGACAGTGGCCACTTTTATCGTACAAAAAATCCTGCTTGATGAGATGG
GATTGAACTATATCTGCGCCACGGCCGAGCGCTTCTTTGCCGTGTCCACA
GTGCTGAGTAACATGGTGCAAGCGCTGATAGAGGTTCCTTCAGTGAGGCT
ACTCAAGCATATTGTCCGTTGTTATTTACGCCTGTCGGAGAATCCGAGAG
CGCGTGATGCGCTGCGACAGTGCTTGCCCGACGCTTTGAGGAGTGACCAG
ACGTTTGCGCAGTGTCTGAAGGATGATGTGACGATCAATCGCTGGTTGGC
GAACTTGCTGTATAACATTAGCGAGGGAGTTTAGTCTCGTGATAGGCATA
GACGGAGGGAGGAGTAAGTGGGGAGGAGTGCTGAGAGGAGGGGGAGGGAG
GGAGGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAAAGTGACAGGGAATG
TATAGGGAAAATCTGCCAAAGAGACAAAAGAAAAGAGAAGCAAAATAACT
TACATGCATAGAG
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Coding sequence (CDS) from alignment at chr2:334161..336823+

>NO02G01070.2 ID=NO02G01070.2|Name=NO02G01070.2|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at chr2:334161..336823+ (Nannochloropsis oceanica)
ATGGCCGTCAAGTATCTTGCATCCCCTCCCACACACTGTACGTTTTCCCT
TCTCTCCCTCCATCCCTCCCTCCTTCCCTCCCTCCTTCCATACCTCCCTC
CCTCCCTCCCCTCCACCCAATCCACTCAGCGCGAAACCGCCCTGATGGAA
TTGAGCAAGAAGCGTGAGGTCTATCCGGACCTGGCTCCCATCCTCTGGCA
CTCTGTCGGAACCATGGCTGCCCTCCTTCAGGAAATTATTGCCATTTACC
CTATGCTTTCCCCCCCCACCCTAACGGCCCAAGCCAGCAACCGTGTATGC
AACGCCCTGGCCTTGCTGCAGTGTGTGGCGAGCCATGCTGAGACCAGGGG
ACTCTTTTTGCAAGCGCACATTCCCATGTATCTGTACCCTTTCCTTAATA
CGGTCATGAGCAAAAGTCGACCTTTCGAGTACCTGCGTCTCACGTCTCTA
GGCGTGATAGGGGCCTTGGTGAAGATGGACGATTCAGAGGTCATCTCCTT
CCTCCTTCAGACCGAAATAATTCCCCTGTGCCTCCGAATCATGGAGACGG
GAAATGAATTGAGCAAGACAGTGGCCACTTTTATCGTACAAAAAATCCTG
CTTGATGAGATGGGATTGAACTATATCTGCGCCACGGCCGAGCGCTTCTT
TGCCGTGTCCACAGTGCTGAGTAACATGGTGCAAGCGCTGATAGAGGTTC
CTTCAGTGAGGCTACTCAAGCATATTGTCCGTTGTTATTTACGCCTGTCG
GAGAATCCGAGAGCGCGTGATGCGCTGCGACAGTGCTTGCCCGACGCTTT
GAGGAGTGACCAGACGTTTGCGCAGTGTCTGAAGGATGATGTGACGATCA
ATCGCTGGTTGGCGAACTTGCTGTATAACATTAGCGAGGGAGTTTAG
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Synonyms
Publications