NO02G00930.1, NO02G00930.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G00930.1
Unique Name	NO02G00930.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3142
Alignment location	chr2:294826..298202 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:294826..298202 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G00930.1 vs.
Match: EWM30569.1 (leucine carboxyl methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 282.0 bits (720), Expect = 2.700e-72
Identity = 132/188 (70.21%), Postives = 156/188 (82.98%), Query Frame = 0

Query:  162 HRLKELRQCHIFELDVKPVLDYKSRILASVTDRFPLLARGMHRLITDFSDDVAWVNTLKSAGFDPRKKTIWILEGFLYYFEASRAQTLLRAIQAESAPGSILLADHINDFTLTSLREQASNKWLTSTFSSAMEVPETAVADLGFEGVEVVTVGEEGANFGLWGLPVVPRKEKKDFMRTYLFQARVGGK 350
            +RL+++++C I+ELDVKPVLDYK+ +LA V DRFPLLAR +HRLI+DF+DDV WV  LK AGFDP KKT+WILEGFLYYF   R QT+L  I+A S+PGS+LLADH+NDFTL SLR QA +KWLTSTFSSAME PET ++ LGFE VEVVTVGE GA++GLW LPV PR EKKD MRTYL +A VG K
Sbjct:   11 YRLEQMKKCQIYELDVKPVLDYKTSVLAGVADRFPLLARSVHRLISDFADDVHWVRQLKEAGFDPEKKTVWILEGFLYYFPEPRVQTMLGVIRALSSPGSLLLADHVNDFTLASLRAQAGDKWLTSTFSSAMEEPETTLSTLGFEEVEVVTVGENGAHYGLWALPVAPRAEKKDVMRTYLIRATVGSK 198

The following BLAST results are available for this feature:

BLAST of NO02G00930.1 vs.

BLAST of NO02G00930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30569.1	2.700e-72	70.21	leucine carboxyl methyltransferase [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G00930	NO02G00930	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G00930.1	NO02G00930.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G00930.1.cds1	NO02G00930.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00930.1.cds2	NO02G00930.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:294826..298202-
coding sequence from alignment at chr2:294826..298202-

mRNA sequence

>NO02G00930.1 ID=NO02G00930.1|Name=NO02G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=3142bp
GCACGCATACGCTTGTCATTCTCCTGCCCGCCCGGCCCATATGGCCGCTT
CCCGCCCTCTTCTCCCCTGCCCGCTCCCCAGTCAGATGCCTGAGGGTATC
GCCCCGGGATATAGGGCGGGATACAACCAGGGCGTGGAGGCATCCCCGCC
ATCCCTCCTCCGCCTCCACCGGGTATCCCCCCAGGTGGCAACGGCATCGG
ACTCTCCATGCCTCTCGCGCCTCCGCCTTGGATAAATTGCCCGCCAAAAC
CCAAACCCCCCATCCCCAACACCCGTAACTGCGCCTGTTCCATCGATGTG
ATACTGCTTCCACCTCCCCACCCTCCTCCTCCTCCTTCTCCACTCCCACT
GCCAGCTTGACGTTGATAAGCTGCAGCAGCTGCAGCCGCAGCAGCGCCAG
CGAAGGGATTGCTTCCTCCGGTGTTGCCTCGCATGTAGGCGACGAATCCA
CCCGCAGCAGCACAACTACTACTGTTGTTGCTGCTGCTGGAGCGTTGATG
AGTAGGTTGAGGAGGGACAAGTCGGGGGAAGGCGGCGGCGGAGGAGGGGG
GAGCGGCGAGAGAGGCAGGAATAGATTGAGAAAGGGGATGTGCCCGTGCT
GCTACAGATAACGTTCTAACTGCTGCTGCCTCTGACGCTGATGGTCGCAC
TGCCAATGCTGGTGATGGTATTGCTGGGTGAGGTGGACGGGGAGGAGGAC
AAGAGGCGCTGTTCTCTTCGTCATCGGAATCGTCGATACAAATAAACTCA
ATTGGTGGTCGAGAGGGAGGAAGAAGGGGAGGGGACATCGCATCGCTGGC
TGAAATTGCTGCCGCCAGATCCAGATCGGATGACGACGACACAGAGGAGG
AGCTACCGGTGCTGTGGCTGCTGTTGCTGTTGTTGCTGCCGGTGCTATTG
CCATCCCCTGTTGAGTTTGAGTTCAGAGCAACCAAAAGCTCTATTTTCTC
CAGTAAATCCGCTTTACTGAGTGCTGACGTGCCCTTAACAATGGTGCGGC
CTTCTTGCGTGATGTCGCGGAGGTACTCGGTGATGATCTCAAGAGGGAGA
AGGGGAAAGAGATGGGGGGAGAGAGGGAGGGAGGGAGGCGGACAAAGGAC
GTGTGAAGGAGTCTGTAGACAACTCTCGCTAGCGGGAATAAAAAGTGGAA
AGGAGGAAGGAGGATGATTCACTGGTACGACAGAAGAAATGAAGGTGATG
TAACGAGAGGACTCATACCTTGAGCTCCTTGACGCTAAATTTCTTCATCA
TCTGGGGCTCTGTAAATCGTCTCTGGACAACACTGAGGGGGATTCTTAAT
CTGGAGGCGATGGCTGCATGGTTGACCATGGCGGTCGAGTGGGGCTTGTG
GCGGTAAGCCTGGCAGGAATACCAAACGAGGAAGCCTTGGGGAAGAAGGA
AGAGGGGGTGGGGAGGCTAGCTCGCTAATGCTAGGCCTTTGCGATCGCGT
ACTTTGCTCCTTCTGGCGGCGAACAGAAATCTACTGGAGGTGCCTGTTTA
TGTGCAAGTGTGTAAGTGGGAGTGGATGTGGGGATGGTTTGGGAACGGAA
GGCAAAGGAAGGCATAGGGGCAGCTGTGCGTTTTTGCGGACTCGGAAGCT
TCGCCAAATGCATGATGCGTCTCGGTTTGACACACCCTCAATTTAACTCC
CTCGTCCCTTTCTTCGCATGCAATGTCACAGACAGGCAGGCAATACAAGC
AGTGCGGGCAAGGTCTACGACGGAATGCCTTATCGCCGCCCGCCCTTGCT
GCTGATTTCCTTTCTCCTCTGCACGACCTACATACTTGCTGCCCAAGCCT
CCAGCGGCAGCAGCAGCAGTAGCAGCAGCAAGCCTGCCCCTCCGCCTGGC
CCCCCAACGGCAACAGACAGAGAGATGGCATGCCCCATCGATGAAGACGT
GGCCTTGTCCTCTCGTCGTTGCGCTGGTGCCCGCTTCCTATTTGAGGAGG
TTGTTCAGGACCCTTTGGCCGCGATTCTAGCAGGAGCTGACATAATCGAA
AGCGAGCGTGCAAGCAAGGCTACCAATGCCGTCTACCCTGTTGTGGCAAT
TCGCACCCATTGGATGGACAATAAAATAACAAAGGCATTGACCGTAGACC
CAGAGCTGACGCAAGTGGTGCTCTGTGGCGCAGGGATGGACGCGCGCGGC
CACCGCCTCAAGGAACTCCGGCAATGCCATATCTTTGAACTTGACGTGAA
ACCCGTCCTGGACTACAAGAGCCGAATCCTGGCAAGCGTCACAGATCGCT
TTCCCTTACTCGCCCGGGGAATGCATCGATTGATCACAGATTTTTCTGAT
GACGTCGCATGGGTAAATACTCTAAAGTCCGCAGGCTTTGACCCGCGCAA
AAAAACAATCTGGATCTTAGAAGGCTTTCTTTACTACTTTGAAGCATCGC
GGGCACAGACATTATTACGGGCCATTCAAGCGGAGTCCGCTCCTGGGAGC
ATTTTGCTTGCGGATCACATCAATGACTTCACTTTGACCTCCCTGCGAGA
GCAAGCAAGCAACAAGTGGCTCACCAGCACGTTTTCCTCTGCGATGGAAG
TGCCTGAGACGGCTGTAGCTGATTTGGGGTTTGAGGGCGTGGAGGTGGTG
ACGGTGGGAGAGGAAGGAGCGAATTTTGGGTTGTGGGGACTTCCGGTTGT
TCCTCGGAAAGAGAAAAAGGATTTTATGAGGACCTATCTGTTTCAGGCAC
GTGTTGGAGGGAAGGGCGAGATGGACAAGAATAGAGATTGAAGGAATGCG
GTGAATGAGGGAGATCATTGAGTGTGCAAAGCGTGTCAATGTGTGTATAT
ACTCCTGGACCAGAAATTGTATGGTTAGTTAGCCATTTTGGAATCTTAGT
GCCCTTTCTTTCTTTCTTTTTGTACAGTGTGGTCCTACTGTTTCACTCGA
ATTTGTCTATACATTGAGTGTTTGATACGTCCTCGTTGTCCTCTGTAAAA
GAGCATATGCGTGTAGCACTGAAGTAGTCGATAGCAGGAGCAGTGGTTGA
TAGCAGGAGCAGCAGCAGTAGTGACAGCAGCGTCGAGCTATGCCGCAGGG
CTATGGAAAAAAATGGGTCTTTTCTCTCCACTTTTCTTTCGCCCTGGCCG
CGAAGGGAAGATTTAAAAGAAGCAACAATACCGCACGGCAAC

protein sequence of NO02G00930.1

>NO02G00930.1-protein ID=NO02G00930.1-protein|Name=NO02G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MQCHRQAGNTSSAGKVYDGMPYRRPPLLLISFLLCTTYILAAQASSGSSS
SSSSKPAPPPGPPTATDREMACPIDEDVALSSRRCAGARFLFEEVVQDPL
AAILAGADIIESERASKATNAVYPVVAIRTHWMDNKITKALTVDPELTQV
VLCGAGMDARGHRLKELRQCHIFELDVKPVLDYKSRILASVTDRFPLLAR
GMHRLITDFSDDVAWVNTLKSAGFDPRKKTIWILEGFLYYFEASRAQTLL
RAIQAESAPGSILLADHINDFTLTSLREQASNKWLTSTFSSAMEVPETAV
ADLGFEGVEVVTVGEEGANFGLWGLPVVPRKEKKDFMRTYLFQARVGGKG
EMDKNRD*

mRNA from alignment at chr2:294826..298202-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G00930.1 ID=NO02G00930.1|Name=NO02G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=3377bp|location=Sequence derived from alignment at chr2:294826..298202- (Nannochloropsis oceanica)
GCACGCATACGCTTGTCATTCTCCTGCCCGCCCGGCCCATATGGCCGCTT
CCCGCCCTCTTCTCCCCTGCCCGCTCCCCAGTCAGATGCCTGAGGGTATC
GCCCCGGGATATAGGGCGGGATACAACCAGGGCGTGGAGGCATCCCCGCC
ATCCCTCCTCCGCCTCCACCGGGTATCCCCCCAGGTGGCAACGGCATCGG
ACTCTCCATGCCTCTCGCGCCTCCGCCTTGGATAAATTGCCCGCCAAAAC
CCAAACCCCCCATCCCCAACACCCGTAACTGCGCCTGTTCCATCGATGTG
ATACTGCTTCCACCTCCCCACCCTCCTCCTCCTCCTTCTCCACTCCCACT
GCCAGCTTGACGTTGATAAGCTGCAGCAGCTGCAGCCGCAGCAGCGCCAG
CGAAGGGATTGCTTCCTCCGGTGTTGCCTCGCATGTAGGCGACGAATCCA
CCCGCAGCAGCACAACTACTACTGTTGTTGCTGCTGCTGGAGCGTTGATG
AGTAGGTTGAGGAGGGACAAGTCGGGGGAAGGCGGCGGCGGAGGAGGGGG
GAGCGGCGAGAGAGGCAGGAATAGATTGAGAAAGGGGATGTGCCCGTGCT
GCTACAGATAACGTTCTAACTGCTGCTGCCTCTGACGCTGATGGTCGCAC
TGCCAATGCTGGTGATGGTATTGCTGGGTGAGGTGGACGGGGAGGAGGAC
AAGAGGCGCTGTTCTCTTCGTCATCGGAATCGTCGATACAAATAAACTCA
ATTGGTGGTCGAGAGGGAGGAAGAAGGGGAGGGGACATCGCATCGCTGGC
TGAAATTGCTGCCGCCAGATCCAGATCGGATGACGACGACACAGAGGAGG
AGCTACCGGTGCTGTGGCTGCTGTTGCTGTTGTTGCTGCCGGTGCTATTG
CCATCCCCTGTTGAGTTTGAGTTCAGAGCAACCAAAAGCTCTATTTTCTC
CAGTAAATCCGCTTTACTGAGTGCTGACGTGCCCTTAACAATGGTGCGGC
CTTCTTGCGTGATGTCGCGGAGGTACTCGGTGATGATCTCAAGAGGGAGA
AGGGGAAAGAGATGGGGGGAGAGAGGGAGGGAGGGAGGCGGACAAAGGAC
GTGTGAAGGAGTCTGTAGACAACTCTCGCTAGCGGGAATAAAAAGTGGAA
AGGAGGAAGGAGGATGATTCACTGGTACGACAGAAGAAATGAAGGTGATG
TAACGAGAGGACTCATACCTTGAGCTCCTTGACGCTAAATTTCTTCATCA
TCTGGGGCTCTGTAAATCGTCTCTGGACAACACTGAGGGGGATTCTTAAT
CTGGAGGCGATGGCTGCATGGTTGACCATGGCGGTCGAGTGGGGCTTGTG
GCGGTAAGCCTGGCAGGAATACCAAACGAGGAAGCCTTGGGGAAGAAGGA
AGAGGGGGTGGGGAGGCTAGCTCGCTAATGCTAGGCCTTTGCGATCGCGT
ACTTTGCTCCTTCTGGCGGCGAACAGAAATCTACTGGAGGTGCCTGTTTA
TGTGCAAGTGTGTAAGTGGGAGTGGATGTGGGGATGGTTTGGGAACGGAA
GGCAAAGGAAGGCATAGGGGCAGCTGTGCGTTTTTGCGGACTCGGAAGCT
TCGCCAAATGCATGATGCGTCTCGGTTTGACACACCCTCAATTTAACTCC
CTCGTCCCTTTCTTCGCATGCAATGTCACAGACAGGCAGGCAATACAAGC
AGTGCGGGCAAGGTCTACGACGGAATGCCTTATCGCCGCCCGCCCTTGCT
GCTGATTTCCTTTCTCCTCTGCACGACCTACATACTTGCTGCCCAAGCCT
CCAGCGGCAGCAGCAGCAGTAGCAGCAGCAAGCCTGCCCCTCCGCCTGGC
CCCCCAACGGCAACAGACAGAGAGATGGCATGCCCCATCGATGAAGACGT
GGCCTTGTCCTCTCGTCGTTGCGCTGGTGCCCGCTTCCTATTTGAGGAGG
TTGTTCAGGACCCTTTGGCCGCGATTCTAGCAGGAGCTGACATAATCGAA
AGCGAGCGTGCAAGCAAGGCTACCAATGCCGTCTACCCTGTTGTGGCAAT
TCGCACCCATTGGATGGACAATAAAATAACAAAGGCATTGACCGTAGACC
CAGAGCTGACGCAAGTGGTGCTCTGTGGCGCAGGGATGGACGCGCGCGGG
TGAGTGTGGGGGGAAGAGGATGACGGGAAGGAAGGAAGACGGAACGGCGC
GGGGAAATGTACAGCTTGGCGACACATTAAGGCACGCGAAGACAGGCGCA
TTCACTATCTATTTCCAGGTCGCGTCTTCTGAGAAGCCCTGAAAGGACTT
CTCAGATCGCTTTCCTTCGCTCGGTCTATTCACTTTCCCTCTCTCGGTTC
CTTCCTTCCTCCCTCCCACCCATTTCCTCCGTAGCCACCGCCTCAAGGAA
CTCCGGCAATGCCATATCTTTGAACTTGACGTGAAACCCGTCCTGGACTA
CAAGAGCCGAATCCTGGCAAGCGTCACAGATCGCTTTCCCTTACTCGCCC
GGGGAATGCATCGATTGATCACAGATTTTTCTGATGACGTCGCATGGGTA
AATACTCTAAAGTCCGCAGGCTTTGACCCGCGCAAAAAAACAATCTGGAT
CTTAGAAGGCTTTCTTTACTACTTTGAAGCATCGCGGGCACAGACATTAT
TACGGGCCATTCAAGCGGAGTCCGCTCCTGGGAGCATTTTGCTTGCGGAT
CACATCAATGACTTCACTTTGACCTCCCTGCGAGAGCAAGCAAGCAACAA
GTGGCTCACCAGCACGTTTTCCTCTGCGATGGAAGTGCCTGAGACGGCTG
TAGCTGATTTGGGGTTTGAGGGCGTGGAGGTGGTGACGGTGGGAGAGGAA
GGAGCGAATTTTGGGTTGTGGGGACTTCCGGTTGTTCCTCGGAAAGAGAA
AAAGGATTTTATGAGGACCTATCTGTTTCAGGCACGTGTTGGAGGGAAGG
GCGAGATGGACAAGAATAGAGATTGAAGGAATGCGGTGAATGAGGGAGAT
CATTGAGTGTGCAAAGCGTGTCAATGTGTGTATATACTCCTGGACCAGAA
ATTGTATGGTTAGTTAGCCATTTTGGAATCTTAGTGCCCTTTCTTTCTTT
CTTTTTGTACAGTGTGGTCCTACTGTTTCACTCGAATTTGTCTATACATT
GAGTGTTTGATACGTCCTCGTTGTCCTCTGTAAAAGAGCATATGCGTGTA
GCACTGAAGTAGTCGATAGCAGGAGCAGTGGTTGATAGCAGGAGCAGCAG
CAGTAGTGACAGCAGCGTCGAGCTATGCCGCAGGGCTATGGAAAAAAATG
GGTCTTTTCTCTCCACTTTTCTTTCGCCCTGGCCGCGAAGGGAAGATTTA
AAAGAAGCAACAATACCGCACGGCAAC

Coding sequence (CDS) from alignment at chr2:294826..298202-

>NO02G00930.1 ID=NO02G00930.1|Name=NO02G00930.1|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at chr2:294826..298202- (Nannochloropsis oceanica)
ATGCAATGTCACAGACAGGCAGGCAATACAAGCAGTGCGGGCAAGGTCTA
CGACGGAATGCCTTATCGCCGCCCGCCCTTGCTGCTGATTTCCTTTCTCC
TCTGCACGACCTACATACTTGCTGCCCAAGCCTCCAGCGGCAGCAGCAGC
AGTAGCAGCAGCAAGCCTGCCCCTCCGCCTGGCCCCCCAACGGCAACAGA
CAGAGAGATGGCATGCCCCATCGATGAAGACGTGGCCTTGTCCTCTCGTC
GTTGCGCTGGTGCCCGCTTCCTATTTGAGGAGGTTGTTCAGGACCCTTTG
GCCGCGATTCTAGCAGGAGCTGACATAATCGAAAGCGAGCGTGCAAGCAA
GGCTACCAATGCCGTCTACCCTGTTGTGGCAATTCGCACCCATTGGATGG
ACAATAAAATAACAAAGGCATTGACCGTAGACCCAGAGCTGACGCAAGTG
GTGCTCTGTGGCGCAGGGATGGACGCGCGCGGCCACCGCCTCAAGGAACT
CCGGCAATGCCATATCTTTGAACTTGACGTGAAACCCGTCCTGGACTACA
AGAGCCGAATCCTGGCAAGCGTCACAGATCGCTTTCCCTTACTCGCCCGG
GGAATGCATCGATTGATCACAGATTTTTCTGATGACGTCGCATGGGTAAA
TACTCTAAAGTCCGCAGGCTTTGACCCGCGCAAAAAAACAATCTGGATCT
TAGAAGGCTTTCTTTACTACTTTGAAGCATCGCGGGCACAGACATTATTA
CGGGCCATTCAAGCGGAGTCCGCTCCTGGGAGCATTTTGCTTGCGGATCA
CATCAATGACTTCACTTTGACCTCCCTGCGAGAGCAAGCAAGCAACAAGT
GGCTCACCAGCACGTTTTCCTCTGCGATGGAAGTGCCTGAGACGGCTGTA
GCTGATTTGGGGTTTGAGGGCGTGGAGGTGGTGACGGTGGGAGAGGAAGG
AGCGAATTTTGGGTTGTGGGGACTTCCGGTTGTTCCTCGGAAAGAGAAAA
AGGATTTTATGAGGACCTATCTGTTTCAGGCACGTGTTGGAGGGAAGGGC
GAGATGGACAAGAATAGAGATTGA

Synonyms

Publications