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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:294826..298202 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00930.1 vs.
Match: EWM30569.1 (leucine carboxyl methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 282.0 bits (720), Expect = 2.700e-72 Identity = 132/188 (70.21%), Postives = 156/188 (82.98%), Query Frame = 0
Query: 162 HRLKELRQCHIFELDVKPVLDYKSRILASVTDRFPLLARGMHRLITDFSDDVAWVNTLKSAGFDPRKKTIWILEGFLYYFEASRAQTLLRAIQAESAPGSILLADHINDFTLTSLREQASNKWLTSTFSSAMEVPETAVADLGFEGVEVVTVGEEGANFGLWGLPVVPRKEKKDFMRTYLFQARVGGK 350
+RL+++++C I+ELDVKPVLDYK+ +LA V DRFPLLAR +HRLI+DF+DDV WV LK AGFDP KKT+WILEGFLYYF R QT+L I+A S+PGS+LLADH+NDFTL SLR QA +KWLTSTFSSAME PET ++ LGFE VEVVTVGE GA++GLW LPV PR EKKD MRTYL +A VG K
Sbjct: 11 YRLEQMKKCQIYELDVKPVLDYKTSVLAGVADRFPLLARSVHRLISDFADDVHWVRQLKEAGFDPEKKTVWILEGFLYYFPEPRVQTMLGVIRALSSPGSLLLADHVNDFTLASLRAQAGDKWLTSTFSSAMEEPETTLSTLGFEEVEVVTVGENGAHYGLWALPVAPRAEKKDVMRTYLIRATVGSK 198
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00930.1 ID=NO02G00930.1|Name=NO02G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=3142bp GCACGCATACGCTTGTCATTCTCCTGCCCGCCCGGCCCATATGGCCGCTT CCCGCCCTCTTCTCCCCTGCCCGCTCCCCAGTCAGATGCCTGAGGGTATC GCCCCGGGATATAGGGCGGGATACAACCAGGGCGTGGAGGCATCCCCGCC ATCCCTCCTCCGCCTCCACCGGGTATCCCCCCAGGTGGCAACGGCATCGG ACTCTCCATGCCTCTCGCGCCTCCGCCTTGGATAAATTGCCCGCCAAAAC CCAAACCCCCCATCCCCAACACCCGTAACTGCGCCTGTTCCATCGATGTG ATACTGCTTCCACCTCCCCACCCTCCTCCTCCTCCTTCTCCACTCCCACT GCCAGCTTGACGTTGATAAGCTGCAGCAGCTGCAGCCGCAGCAGCGCCAG CGAAGGGATTGCTTCCTCCGGTGTTGCCTCGCATGTAGGCGACGAATCCA CCCGCAGCAGCACAACTACTACTGTTGTTGCTGCTGCTGGAGCGTTGATG AGTAGGTTGAGGAGGGACAAGTCGGGGGAAGGCGGCGGCGGAGGAGGGGG GAGCGGCGAGAGAGGCAGGAATAGATTGAGAAAGGGGATGTGCCCGTGCT GCTACAGATAACGTTCTAACTGCTGCTGCCTCTGACGCTGATGGTCGCAC TGCCAATGCTGGTGATGGTATTGCTGGGTGAGGTGGACGGGGAGGAGGAC AAGAGGCGCTGTTCTCTTCGTCATCGGAATCGTCGATACAAATAAACTCA ATTGGTGGTCGAGAGGGAGGAAGAAGGGGAGGGGACATCGCATCGCTGGC TGAAATTGCTGCCGCCAGATCCAGATCGGATGACGACGACACAGAGGAGG AGCTACCGGTGCTGTGGCTGCTGTTGCTGTTGTTGCTGCCGGTGCTATTG CCATCCCCTGTTGAGTTTGAGTTCAGAGCAACCAAAAGCTCTATTTTCTC CAGTAAATCCGCTTTACTGAGTGCTGACGTGCCCTTAACAATGGTGCGGC CTTCTTGCGTGATGTCGCGGAGGTACTCGGTGATGATCTCAAGAGGGAGA AGGGGAAAGAGATGGGGGGAGAGAGGGAGGGAGGGAGGCGGACAAAGGAC GTGTGAAGGAGTCTGTAGACAACTCTCGCTAGCGGGAATAAAAAGTGGAA AGGAGGAAGGAGGATGATTCACTGGTACGACAGAAGAAATGAAGGTGATG TAACGAGAGGACTCATACCTTGAGCTCCTTGACGCTAAATTTCTTCATCA TCTGGGGCTCTGTAAATCGTCTCTGGACAACACTGAGGGGGATTCTTAAT CTGGAGGCGATGGCTGCATGGTTGACCATGGCGGTCGAGTGGGGCTTGTG GCGGTAAGCCTGGCAGGAATACCAAACGAGGAAGCCTTGGGGAAGAAGGA AGAGGGGGTGGGGAGGCTAGCTCGCTAATGCTAGGCCTTTGCGATCGCGT ACTTTGCTCCTTCTGGCGGCGAACAGAAATCTACTGGAGGTGCCTGTTTA TGTGCAAGTGTGTAAGTGGGAGTGGATGTGGGGATGGTTTGGGAACGGAA GGCAAAGGAAGGCATAGGGGCAGCTGTGCGTTTTTGCGGACTCGGAAGCT TCGCCAAATGCATGATGCGTCTCGGTTTGACACACCCTCAATTTAACTCC CTCGTCCCTTTCTTCGCATGCAATGTCACAGACAGGCAGGCAATACAAGC AGTGCGGGCAAGGTCTACGACGGAATGCCTTATCGCCGCCCGCCCTTGCT GCTGATTTCCTTTCTCCTCTGCACGACCTACATACTTGCTGCCCAAGCCT CCAGCGGCAGCAGCAGCAGTAGCAGCAGCAAGCCTGCCCCTCCGCCTGGC CCCCCAACGGCAACAGACAGAGAGATGGCATGCCCCATCGATGAAGACGT GGCCTTGTCCTCTCGTCGTTGCGCTGGTGCCCGCTTCCTATTTGAGGAGG TTGTTCAGGACCCTTTGGCCGCGATTCTAGCAGGAGCTGACATAATCGAA AGCGAGCGTGCAAGCAAGGCTACCAATGCCGTCTACCCTGTTGTGGCAAT TCGCACCCATTGGATGGACAATAAAATAACAAAGGCATTGACCGTAGACC CAGAGCTGACGCAAGTGGTGCTCTGTGGCGCAGGGATGGACGCGCGCGGC CACCGCCTCAAGGAACTCCGGCAATGCCATATCTTTGAACTTGACGTGAA ACCCGTCCTGGACTACAAGAGCCGAATCCTGGCAAGCGTCACAGATCGCT TTCCCTTACTCGCCCGGGGAATGCATCGATTGATCACAGATTTTTCTGAT GACGTCGCATGGGTAAATACTCTAAAGTCCGCAGGCTTTGACCCGCGCAA AAAAACAATCTGGATCTTAGAAGGCTTTCTTTACTACTTTGAAGCATCGC GGGCACAGACATTATTACGGGCCATTCAAGCGGAGTCCGCTCCTGGGAGC ATTTTGCTTGCGGATCACATCAATGACTTCACTTTGACCTCCCTGCGAGA GCAAGCAAGCAACAAGTGGCTCACCAGCACGTTTTCCTCTGCGATGGAAG TGCCTGAGACGGCTGTAGCTGATTTGGGGTTTGAGGGCGTGGAGGTGGTG ACGGTGGGAGAGGAAGGAGCGAATTTTGGGTTGTGGGGACTTCCGGTTGT TCCTCGGAAAGAGAAAAAGGATTTTATGAGGACCTATCTGTTTCAGGCAC GTGTTGGAGGGAAGGGCGAGATGGACAAGAATAGAGATTGAAGGAATGCG GTGAATGAGGGAGATCATTGAGTGTGCAAAGCGTGTCAATGTGTGTATAT ACTCCTGGACCAGAAATTGTATGGTTAGTTAGCCATTTTGGAATCTTAGT GCCCTTTCTTTCTTTCTTTTTGTACAGTGTGGTCCTACTGTTTCACTCGA ATTTGTCTATACATTGAGTGTTTGATACGTCCTCGTTGTCCTCTGTAAAA GAGCATATGCGTGTAGCACTGAAGTAGTCGATAGCAGGAGCAGTGGTTGA TAGCAGGAGCAGCAGCAGTAGTGACAGCAGCGTCGAGCTATGCCGCAGGG CTATGGAAAAAAATGGGTCTTTTCTCTCCACTTTTCTTTCGCCCTGGCCG CGAAGGGAAGATTTAAAAGAAGCAACAATACCGCACGGCAAC back to topprotein sequence of NO02G00930.1 >NO02G00930.1-protein ID=NO02G00930.1-protein|Name=NO02G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp MQCHRQAGNTSSAGKVYDGMPYRRPPLLLISFLLCTTYILAAQASSGSSS SSSSKPAPPPGPPTATDREMACPIDEDVALSSRRCAGARFLFEEVVQDPL AAILAGADIIESERASKATNAVYPVVAIRTHWMDNKITKALTVDPELTQV VLCGAGMDARGHRLKELRQCHIFELDVKPVLDYKSRILASVTDRFPLLAR GMHRLITDFSDDVAWVNTLKSAGFDPRKKTIWILEGFLYYFEASRAQTLL RAIQAESAPGSILLADHINDFTLTSLREQASNKWLTSTFSSAMEVPETAV ADLGFEGVEVVTVGEEGANFGLWGLPVVPRKEKKDFMRTYLFQARVGGKG EMDKNRD* back to topmRNA from alignment at chr2:294826..298202- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00930.1 ID=NO02G00930.1|Name=NO02G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=3377bp|location=Sequence derived from alignment at chr2:294826..298202- (Nannochloropsis oceanica) GCACGCATACGCTTGTCATTCTCCTGCCCGCCCGGCCCATATGGCCGCTT
CCCGCCCTCTTCTCCCCTGCCCGCTCCCCAGTCAGATGCCTGAGGGTATC
GCCCCGGGATATAGGGCGGGATACAACCAGGGCGTGGAGGCATCCCCGCC
ATCCCTCCTCCGCCTCCACCGGGTATCCCCCCAGGTGGCAACGGCATCGG
ACTCTCCATGCCTCTCGCGCCTCCGCCTTGGATAAATTGCCCGCCAAAAC
CCAAACCCCCCATCCCCAACACCCGTAACTGCGCCTGTTCCATCGATGTG
ATACTGCTTCCACCTCCCCACCCTCCTCCTCCTCCTTCTCCACTCCCACT
GCCAGCTTGACGTTGATAAGCTGCAGCAGCTGCAGCCGCAGCAGCGCCAG
CGAAGGGATTGCTTCCTCCGGTGTTGCCTCGCATGTAGGCGACGAATCCA
CCCGCAGCAGCACAACTACTACTGTTGTTGCTGCTGCTGGAGCGTTGATG
AGTAGGTTGAGGAGGGACAAGTCGGGGGAAGGCGGCGGCGGAGGAGGGGG
GAGCGGCGAGAGAGGCAGGAATAGATTGAGAAAGGGGATGTGCCCGTGCT
GCTACAGATAACGTTCTAACTGCTGCTGCCTCTGACGCTGATGGTCGCAC
TGCCAATGCTGGTGATGGTATTGCTGGGTGAGGTGGACGGGGAGGAGGAC
AAGAGGCGCTGTTCTCTTCGTCATCGGAATCGTCGATACAAATAAACTCA
ATTGGTGGTCGAGAGGGAGGAAGAAGGGGAGGGGACATCGCATCGCTGGC
TGAAATTGCTGCCGCCAGATCCAGATCGGATGACGACGACACAGAGGAGG
AGCTACCGGTGCTGTGGCTGCTGTTGCTGTTGTTGCTGCCGGTGCTATTG
CCATCCCCTGTTGAGTTTGAGTTCAGAGCAACCAAAAGCTCTATTTTCTC
CAGTAAATCCGCTTTACTGAGTGCTGACGTGCCCTTAACAATGGTGCGGC
CTTCTTGCGTGATGTCGCGGAGGTACTCGGTGATGATCTCAAGAGGGAGA
AGGGGAAAGAGATGGGGGGAGAGAGGGAGGGAGGGAGGCGGACAAAGGAC
GTGTGAAGGAGTCTGTAGACAACTCTCGCTAGCGGGAATAAAAAGTGGAA
AGGAGGAAGGAGGATGATTCACTGGTACGACAGAAGAAATGAAGGTGATG
TAACGAGAGGACTCATACCTTGAGCTCCTTGACGCTAAATTTCTTCATCA
TCTGGGGCTCTGTAAATCGTCTCTGGACAACACTGAGGGGGATTCTTAAT
CTGGAGGCGATGGCTGCATGGTTGACCATGGCGGTCGAGTGGGGCTTGTG
GCGGTAAGCCTGGCAGGAATACCAAACGAGGAAGCCTTGGGGAAGAAGGA
AGAGGGGGTGGGGAGGCTAGCTCGCTAATGCTAGGCCTTTGCGATCGCGT
ACTTTGCTCCTTCTGGCGGCGAACAGAAATCTACTGGAGGTGCCTGTTTA
TGTGCAAGTGTGTAAGTGGGAGTGGATGTGGGGATGGTTTGGGAACGGAA
GGCAAAGGAAGGCATAGGGGCAGCTGTGCGTTTTTGCGGACTCGGAAGCT
TCGCCAAATGCATGATGCGTCTCGGTTTGACACACCCTCAATTTAACTCC
CTCGTCCCTTTCTTCGCATGCAATGTCACAGACAGGCAGGCAATACAAGC
AGTGCGGGCAAGGTCTACGACGGAATGCCTTATCGCCGCCCGCCCTTGCT
GCTGATTTCCTTTCTCCTCTGCACGACCTACATACTTGCTGCCCAAGCCT
CCAGCGGCAGCAGCAGCAGTAGCAGCAGCAAGCCTGCCCCTCCGCCTGGC
CCCCCAACGGCAACAGACAGAGAGATGGCATGCCCCATCGATGAAGACGT
GGCCTTGTCCTCTCGTCGTTGCGCTGGTGCCCGCTTCCTATTTGAGGAGG
TTGTTCAGGACCCTTTGGCCGCGATTCTAGCAGGAGCTGACATAATCGAA
AGCGAGCGTGCAAGCAAGGCTACCAATGCCGTCTACCCTGTTGTGGCAAT
TCGCACCCATTGGATGGACAATAAAATAACAAAGGCATTGACCGTAGACC
CAGAGCTGACGCAAGTGGTGCTCTGTGGCGCAGGGATGGACGCGCGCGGG
TGAGTGTGGGGGGAAGAGGATGACGGGAAGGAAGGAAGACGGAACGGCGC
GGGGAAATGTACAGCTTGGCGACACATTAAGGCACGCGAAGACAGGCGCA
TTCACTATCTATTTCCAGGTCGCGTCTTCTGAGAAGCCCTGAAAGGACTT
CTCAGATCGCTTTCCTTCGCTCGGTCTATTCACTTTCCCTCTCTCGGTTC
CTTCCTTCCTCCCTCCCACCCATTTCCTCCGTAGCCACCGCCTCAAGGAA
CTCCGGCAATGCCATATCTTTGAACTTGACGTGAAACCCGTCCTGGACTA
CAAGAGCCGAATCCTGGCAAGCGTCACAGATCGCTTTCCCTTACTCGCCC
GGGGAATGCATCGATTGATCACAGATTTTTCTGATGACGTCGCATGGGTA
AATACTCTAAAGTCCGCAGGCTTTGACCCGCGCAAAAAAACAATCTGGAT
CTTAGAAGGCTTTCTTTACTACTTTGAAGCATCGCGGGCACAGACATTAT
TACGGGCCATTCAAGCGGAGTCCGCTCCTGGGAGCATTTTGCTTGCGGAT
CACATCAATGACTTCACTTTGACCTCCCTGCGAGAGCAAGCAAGCAACAA
GTGGCTCACCAGCACGTTTTCCTCTGCGATGGAAGTGCCTGAGACGGCTG
TAGCTGATTTGGGGTTTGAGGGCGTGGAGGTGGTGACGGTGGGAGAGGAA
GGAGCGAATTTTGGGTTGTGGGGACTTCCGGTTGTTCCTCGGAAAGAGAA
AAAGGATTTTATGAGGACCTATCTGTTTCAGGCACGTGTTGGAGGGAAGG
GCGAGATGGACAAGAATAGAGATTGAAGGAATGCGGTGAATGAGGGAGAT
CATTGAGTGTGCAAAGCGTGTCAATGTGTGTATATACTCCTGGACCAGAA
ATTGTATGGTTAGTTAGCCATTTTGGAATCTTAGTGCCCTTTCTTTCTTT
CTTTTTGTACAGTGTGGTCCTACTGTTTCACTCGAATTTGTCTATACATT
GAGTGTTTGATACGTCCTCGTTGTCCTCTGTAAAAGAGCATATGCGTGTA
GCACTGAAGTAGTCGATAGCAGGAGCAGTGGTTGATAGCAGGAGCAGCAG
CAGTAGTGACAGCAGCGTCGAGCTATGCCGCAGGGCTATGGAAAAAAATG
GGTCTTTTCTCTCCACTTTTCTTTCGCCCTGGCCGCGAAGGGAAGATTTA
AAAGAAGCAACAATACCGCACGGCAAC back to topCoding sequence (CDS) from alignment at chr2:294826..298202- >NO02G00930.1 ID=NO02G00930.1|Name=NO02G00930.1|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at chr2:294826..298202- (Nannochloropsis oceanica) ATGCAATGTCACAGACAGGCAGGCAATACAAGCAGTGCGGGCAAGGTCTA CGACGGAATGCCTTATCGCCGCCCGCCCTTGCTGCTGATTTCCTTTCTCC TCTGCACGACCTACATACTTGCTGCCCAAGCCTCCAGCGGCAGCAGCAGC AGTAGCAGCAGCAAGCCTGCCCCTCCGCCTGGCCCCCCAACGGCAACAGA CAGAGAGATGGCATGCCCCATCGATGAAGACGTGGCCTTGTCCTCTCGTC GTTGCGCTGGTGCCCGCTTCCTATTTGAGGAGGTTGTTCAGGACCCTTTG GCCGCGATTCTAGCAGGAGCTGACATAATCGAAAGCGAGCGTGCAAGCAA GGCTACCAATGCCGTCTACCCTGTTGTGGCAATTCGCACCCATTGGATGG ACAATAAAATAACAAAGGCATTGACCGTAGACCCAGAGCTGACGCAAGTG GTGCTCTGTGGCGCAGGGATGGACGCGCGCGGCCACCGCCTCAAGGAACT CCGGCAATGCCATATCTTTGAACTTGACGTGAAACCCGTCCTGGACTACA AGAGCCGAATCCTGGCAAGCGTCACAGATCGCTTTCCCTTACTCGCCCGG GGAATGCATCGATTGATCACAGATTTTTCTGATGACGTCGCATGGGTAAA TACTCTAAAGTCCGCAGGCTTTGACCCGCGCAAAAAAACAATCTGGATCT TAGAAGGCTTTCTTTACTACTTTGAAGCATCGCGGGCACAGACATTATTA CGGGCCATTCAAGCGGAGTCCGCTCCTGGGAGCATTTTGCTTGCGGATCA CATCAATGACTTCACTTTGACCTCCCTGCGAGAGCAAGCAAGCAACAAGT GGCTCACCAGCACGTTTTCCTCTGCGATGGAAGTGCCTGAGACGGCTGTA GCTGATTTGGGGTTTGAGGGCGTGGAGGTGGTGACGGTGGGAGAGGAAGG AGCGAATTTTGGGTTGTGGGGACTTCCGGTTGTTCCTCGGAAAGAGAAAA AGGATTTTATGAGGACCTATCTGTTTCAGGCACGTGTTGGAGGGAAGGGC GAGATGGACAAGAATAGAGATTGA back to top
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