NO02G00920.1, NO02G00920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00920.1
Unique NameNO02G00920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length615
Alignment locationchr2:293426..294301 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:293426..294301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G00920.1 vs.
Match: EWM30555.1 (Protein of unknown function DUF1754, eukaryotic [Nannochloropsis gaditana])

HSP 1 Score: 136.0 bits (341), Expect = 7.800e-29
Identity = 79/123 (64.23%), Postives = 88/123 (71.54%), Query Frame = 0 
Query:    1 MPIGGALKLKGMSINKDKKKKKKRSREESPDDDAVAATSTHHKDDGEDGEEV-----PLALEKDDGLTETQRRHIARQKEREKNNIKNMVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 119
            MP+GGALKLKG+     KKKK++R      + DAV    TH K +   G E          EKDDGLTETQRRHIA+ KERE+ NIK +VSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG
Sbjct:    1 MPVGGALKLKGLPTKDKKKKKRQRDERSHHEGDAVL---THEKQEERGGNESISDTSSFPSEKDDGLTETQRRHIAKLKERERQNIKKLVSKSHRERIDEFNQYLSVLTEHNDIPRVSAAGNG 120
The following BLAST results are available for this feature:
BLAST of NO02G00920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30555.17.800e-2964.23Protein of unknown function DUF1754, eukaryotic [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00920NO02G00920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00920.1NO02G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00920.1.cds1NO02G00920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00920.1.cds2NO02G00920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00920.1 ID=NO02G00920.1|Name=NO02G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=615bp
TCCACAAGCTAACAATCCTTGCATGCACACCACAATCATAACACACAGGC
TGCAATCATGCCTATCGGCGGGGCGCTCAAGCTCAAAGGGATGTCTATCA
ACAAGGACAAGAAGAAGAAAAAGAAACGTTCCCGCGAGGAGAGTCCTGAC
GACGATGCAGTAGCCGCGACCAGCACGCATCACAAAGATGATGGCGAGGA
TGGGGAGGAGGTTCCACTTGCCTTGGAGAAGGACGACGGATTAACTGAGA
CGCAACGCCGACACATTGCCCGACAGAAGGAGCGGGAGAAGAATAATATC
AAGAATATGGTTAGCAAAAGCCATCGGGAGCGCATTGACGAGTTTAATCA
GTACTTGTCTGTGTTGACGGAACACAATGACATTCCTCGAGTGTCGGCGG
CCGGGAACGGGTAGAAGGTGGAAGACTCATGAACACAGGAATATGGAAGA
GCTGAAGAGAGGGAGTATTTTTATGTGTTTGTACGTGTCCATGTGGGTGT
GTGTGCTTGTGAATACAGGGGATGAAAAAGAAGGAAGAAGTTGCGTTGCG
TTCTGAGGAGACATTTATGATAAACGAACAAATAAAGAAGATATTAATTC
AGTTTTTCTGTGTAA
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protein sequence of NO02G00920.1

>NO02G00920.1-protein ID=NO02G00920.1-protein|Name=NO02G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MPIGGALKLKGMSINKDKKKKKKRSREESPDDDAVAATSTHHKDDGEDGE
EVPLALEKDDGLTETQRRHIARQKEREKNNIKNMVSKSHRERIDEFNQYL
SVLTEHNDIPRVSAAGNG*
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mRNA from alignment at chr2:293426..294301-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00920.1 ID=NO02G00920.1|Name=NO02G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=876bp|location=Sequence derived from alignment at chr2:293426..294301- (Nannochloropsis oceanica)
TCCACAAGCTAACAATCCTTGCATGCACACCACAATCATAACACACAGGC
TGCAATCATGCCTATCGGCGGGGCGCTCAAGCTCAAAGGGATGTCTATCA
ACAAGGACAAGTAAGTACCTACATAATCCTTCCATGCCCTCCATCTCCTT
CCATGATACATTCATGCCACATGTACGCAGTCTATGCGACAGAACCACGG
CTGAGTAAGTGTTTCACTTGCCCCTAAAGAGCGTACCAATCGTTGCTGTG
GCCACGTCGGTTTATCTCCCTCCTTTCTTTAGGGAACTCACATGCTGGAT
CAACCCACCCCACCATTTTCCTTCCGCATACATCGCACCAACACCGCACC
ACACACCCGTCCACGTCACAGGAAGAAGAAAAAGAAACGTTCCCGCGAGG
AGAGTCCTGACGACGATGCAGTAGCCGCGACCAGCACGCATCACAAAGAT
GATGGCGAGGATGGGGAGGAGGTTCCACTTGCCTTGGAGAAGGACGACGG
ATTAACTGAGACGCAACGCCGACACATTGCCCGACAGAAGGAGCGGGAGA
AGAATAATATCAAGAATATGGTTAGCAAAAGCCATCGGGAGCGCATTGAC
GAGTTTAATCAGTACTTGTCTGTGTTGACGGAACACAATGACATTCCTCG
AGTGTCGGCGGCCGGGAACGGGTAGAAGGTGGAAGACTCATGAACACAGG
AATATGGAAGAGCTGAAGAGAGGGAGTATTTTTATGTGTTTGTACGTGTC
CATGTGGGTGTGTGTGCTTGTGAATACAGGGGATGAAAAAGAAGGAAGAA
GTTGCGTTGCGTTCTGAGGAGACATTTATGATAAACGAACAAATAAAGAA
GATATTAATTCAGTTTTTCTGTGTAA
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Coding sequence (CDS) from alignment at chr2:293426..294301-

>NO02G00920.1 ID=NO02G00920.1|Name=NO02G00920.1|organism=Nannochloropsis oceanica|type=CDS|length=357bp|location=Sequence derived from alignment at chr2:293426..294301- (Nannochloropsis oceanica)
ATGCCTATCGGCGGGGCGCTCAAGCTCAAAGGGATGTCTATCAACAAGGA
CAAGAAGAAGAAAAAGAAACGTTCCCGCGAGGAGAGTCCTGACGACGATG
CAGTAGCCGCGACCAGCACGCATCACAAAGATGATGGCGAGGATGGGGAG
GAGGTTCCACTTGCCTTGGAGAAGGACGACGGATTAACTGAGACGCAACG
CCGACACATTGCCCGACAGAAGGAGCGGGAGAAGAATAATATCAAGAATA
TGGTTAGCAAAAGCCATCGGGAGCGCATTGACGAGTTTAATCAGTACTTG
TCTGTGTTGACGGAACACAATGACATTCCTCGAGTGTCGGCGGCCGGGAA
CGGGTAG
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Synonyms
Publications